Spg008437 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008437
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 31899819 .. 31902507 (-)
RNA-Seq Expression	Spg008437
Synteny	Spg008437

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTATCCCTTCAGGGTGGACATCCCTTCATCCCAAAAGGAAAGGCTAAAGGTAGACCTCAATCTGATATTGCAAAAAAAGGCTATATGTTATTTAATTTTGTGGCTTTCAAAGAGAGGAAGGACAATAGAATTAAATTTTGGAAACACAGGTGGATTGGGTGCTGTTCTTTGGAAGCTTCCTTCTCAGACTCATACAATATTTCTTTGAAGGAGGTTATAATTGTCGAATGTTGTAATGGGAATAGCGATGATTGGGAACTCGGTTTTAGAAGGAGACCTTTGGACAAAGAATTTAAGAGTTGGCTGGGGCTTGTGGCTATTATAGATGCAATGAGGCTTGGTGATGGGGTGGGTTTCTTTGGTCCCTTGATTATTCAGGTTGTCTCACCACCAAATTTGCTTTCATAAAGCTAACTAAAACAAATCAGAAATTGGAATCCCCCCAATTAATCTGATTTGGAAATTCAATGTCCCTAAGAAGGTTAAGATCTTCCTTTGAAGTCTCTCATATAGAAGCTTTAACACTCAAGATAGAATACAAATGAAGCTAAAAAGCTAGTATCTCTCCCCATCAGTTTGCTGCCTTTGCCTATGGAATGAAGAAATTCAAGATCACCTTTTCCACCAATGCTCTTTTCCCACTAGGGGTGGAATTTTTTGTTGAAGGATATTTGGCTTCATAGCAGATTCATTGAGTCAGTTTATCCATGTTTGTAGGCATAAAGGCTTTCTTAGAGGCTTTAAGGTGGTTAAGGACGACGTTGAAGTATCCCATATTCAATTTGCAGATGGCACCCTTCTTTTTTATATATATAAAAACCAGCTTTCATTGGGAAAAAATGAATGAATACAAGGGCAACCAAAAAAATCAGCCCACAAAAAGACCCCCTTTAGAGGAAGGGCCGCAAATCAAGAATAATAGTGCCTAGAGAATAATTACAAAAAAAAACTTAGAAACCGAGGCCCAAAGAGAAATATAGAATCTAGTAAGGGCCCAAACATCCAAAGGACCCCTCTCATGTCCCTGAAAACCCTATTACTTCTCTCACCCCAAAGGCCCCACAAAACAGCGCACACCCCAGCTAACCATAAAAACCTCCCCTTATCACAAATGGCACCCTTCTTTTTAGCAAAGGAAACAGTCAGATGGTGAAAAATTGGTAAACCTTTCTAAAGTTTTTCGAACAAGCATTTGGTCTTACCATTAATATGCAAAAAACAGCCATTATCGGCTTGAATGTGGAGAAGGATGTCGGCTTGAATGTGGAGAAGGATGAAGTCCAAGAGTTGGCTGGTATGCTGGGGTGTAAAGTTGAGTCTCTTCCTTCTAATTATCCGAGGATTACGGTTGGGGGAAAGCCCAGAATTGCTTCATTTTGAGATCCTGTCTATGAAAAAGTAAGGAGTAAGTTTGCTGTTTGGAGGGGTTTTCCTATCTCTAAAGGAGGATGTTGCTACTTTAATTAAAGTTGTTCTTTCTAGTATTTTGGTCTATTACTTGTCTATCTATAGAATTCTCGTGGAGGTGTGCCAAAAGATCGAGAAAAACTTCATAAGGTTCTAGTGGAGAGGGACTGGTGAGGCAAAGGATTCTATTTAGTCAACTGCCCCTCGGTCTTTGGGGGGAGGGGGCGCTAGGAATCGACTACCTTAGAGCTAAAAATTTGGCCCAGCTTGCAAAATGGCTTTGGTGTTTTGATAAGAAGTCCTTCGCGTTATGGAGAATGGTGGTGAAAAGCAAGTATGAGGAGTTTTTCATCTGTGATCATCATATTAATAAAAAGTGGCAAGGCAACTTTAGCCCCCGAAAGGATATTGCTATAGCAGCTAGTTTTTTTTAGGAACATAACAAGTTCAAAGTGGGAAGAGGGGATAAGGTGTTCTTTTGGAATGATTGTTGGCTGTCTGAGAATCCTCTCAAAGAGGTTGTTTCCTCACGTTTTTAGAATCTCTATGGCTAAGGATGCTAAATCTCAGGAGTTATGGAACGGGTCAGCTTGGGATTTGAGATGGAGTAGGGAGATGTTTGACCAAGAGTTGGAAGAGTGGATTAGTCTCTCTTACTTATTGAATCTGTGTAATCTCACCCAAAGTGAAGACGAGCTATGGTGGAAGTTAATGGTGTATTTAGATATGTGTTATTCTATTTAGTTGGTTTAATGTGGTTAATCCGTTAATCTTATTTATTATTCCGTTATTCTCCTTAAAATGTATAAATAAAATTCAGCTTTCAATTAATAAATGAGGAGAATTCATTGTCGAACTCTGAGTTTCTTTAGAAGCTAGAAGAGTCGAGTAAGTTCACTGTGAACTTTGCTTTGAAAGCCCTTCAGTTGAAAAAGAATGGTGCTGGAAGATGCTTTGTGTACTCAAATTTGGGAGGGTGTTGCTCCAAATAGGGTCAAGTTCTTCTTATGGACCCTCCCGATTCATAGTATTGACACGATGGACAAGGTTCAAAGGAGGTTTCCAAGTCTCCAAATCTCCCCCAAATGCATGTGCTATGTGTCTTAGAAGCAAAGAAATGTCCTGCCACCTCCTGCTTCCCAGTGCTTTTGCAAAGAAGGCGTGGAACCATTTTGGTTATGTGTTCAGGTTGCAAGGGTGTAAGCTTAGGTGCGTGGTAAGGTGGATTGATGAAGCTCTTTCCAAATTTTGTTTTAGAGATGAAGCTCATGTTCTA

mRNA sequence

ATGGTAGTATCCCTTCAGGGTGGACATCCCTTCATCCCAAAAGGAAAGGCTAAAGGTAGACCTCAATCTGATATTGCAAAAAAAGGCTATATGTTATTTAATTTTGTGGCTTTCAAAGAGAGGAAGGACAATAGAATTAAATTTTGGAAACACAGGTGGATTGGGTGCTGTTCTTTGGAAGCTTCCTTCTCAGACTCATACAATATTTCTTTGAAGGAGGTTATAATTGTCGAATGTTGTAATGGGAATAGCGATGATTGGGAACTCGGTTTTAGAAGGAGACCTTTGGACAAAGAATTTAAGAGTTGGCTGGGGCTTGTGGCTATTATAGATGCAATGAGGCTTGGTGATGGGGTGGCCATTATCGGCTTGAATGTGGAGAAGGATGTCGGCTTGAATGTGGAGAAGGATGAAGTCCAAGAGTTGGCTGGAATCGACTACCTTAGAGCTAAAAATTTGGCCCAGCTTGCAAAATGGCTTTGGTGTTTTGATAAGAAGTCCTTCGCGTTATGGAGAATGGTGGTGAAAAGCAACCCTTCAGTTGAAAAAGAATGGTGCTGGAAGATGCTTTGTGTACTCAAATTTGGGAGGGTGTTGCTCCAAATAGGGTCAAGTTCTTCTTATGGACCCTCCCGATTCATAGTATTGACACGATGGACAAGGTTCAAAGGAGGTTTCCAAGTCTCCAAATCTCCCCCAAATGCATGTGCTATGTGTCTTAGAAGCAAAGAAATGTCCTGCCACCTCCTGCTTCCCAGTGCTTTTGCAAAGAAGGCGTGGAACCATTTTGGTTATGTGTTCAGGTTGCAAGGGTGTAAGCTTAGGTGCGTGGTAAGGTGGATTGATGAAGCTCTTTCCAAATTTTGTTTTAGAGATGAAGCTCATGTTCTA

Coding sequence (CDS)

ATGGTAGTATCCCTTCAGGGTGGACATCCCTTCATCCCAAAAGGAAAGGCTAAAGGTAGACCTCAATCTGATATTGCAAAAAAAGGCTATATGTTATTTAATTTTGTGGCTTTCAAAGAGAGGAAGGACAATAGAATTAAATTTTGGAAACACAGGTGGATTGGGTGCTGTTCTTTGGAAGCTTCCTTCTCAGACTCATACAATATTTCTTTGAAGGAGGTTATAATTGTCGAATGTTGTAATGGGAATAGCGATGATTGGGAACTCGGTTTTAGAAGGAGACCTTTGGACAAAGAATTTAAGAGTTGGCTGGGGCTTGTGGCTATTATAGATGCAATGAGGCTTGGTGATGGGGTGGCCATTATCGGCTTGAATGTGGAGAAGGATGTCGGCTTGAATGTGGAGAAGGATGAAGTCCAAGAGTTGGCTGGAATCGACTACCTTAGAGCTAAAAATTTGGCCCAGCTTGCAAAATGGCTTTGGTGTTTTGATAAGAAGTCCTTCGCGTTATGGAGAATGGTGGTGAAAAGCAACCCTTCAGTTGAAAAAGAATGGTGCTGGAAGATGCTTTGTGTACTCAAATTTGGGAGGGTGTTGCTCCAAATAGGGTCAAGTTCTTCTTATGGACCCTCCCGATTCATAGTATTGACACGATGGACAAGGTTCAAAGGAGGTTTCCAAGTCTCCAAATCTCCCCCAAATGCATGTGCTATGTGTCTTAGAAGCAAAGAAATGTCCTGCCACCTCCTGCTTCCCAGTGCTTTTGCAAAGAAGGCGTGGAACCATTTTGGTTATGTGTTCAGGTTGCAAGGGTGTAAGCTTAGGTGCGTGGTAAGGTGGATTGATGAAGCTCTTTCCAAATTTTGTTTTAGAGATGAAGCTCATGTTCTA

Protein sequence

MVVSLQGGHPFIPKGKAKGRPQSDIAKKGYMLFNFVAFKERKDNRIKFWKHRWIGCCSLEASFSDSYNISLKEVIIVECCNGNSDDWELGFRRRPLDKEFKSWLGLVAIIDAMRLGDGVAIIGLNVEKDVGLNVEKDEVQELAGIDYLRAKNLAQLAKWLWCFDKKSFALWRMVVKSNPSVEKEWCWKMLCVLKFGRVLLQIGSSSSYGPSRFIVLTRWTRFKGGFQVSKSPPNACAMCLRSKEMSCHLLLPSAFAKKAWNHFGYVFRLQGCKLRCVVRWIDEALSKFCFRDEAHVL

Homology

[Close]

BLAST of Spg008437 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-08
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 13  PKGKAKGRPQSDIAKKGYMLFNFVAFKERKDNRIKFWKHRWIGCCSLEASFSDSYNISLK 72
           PKGKAKGRP  DIAK        V FK  + +R+ FW  +W G   L   F D + +SLK
Sbjct: 280 PKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKWAGNLPLLDEFPDMFALSLK 339

Query: 73  E-VIIVECCNGNSDDWELGFRRRPLD 98
           +   + +C N  +  W+L  RR   D
Sbjct: 340 QNAYVKDCWNEENQTWDLALRRGLFD 365

[Close]

BLAST of Spg008437 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 13  PKGKAKGRPQSDIAKKGYMLFNFVAFKERKDNRIKFWKHRWIGCCSLEASFSDSYNISLK 72
           PKGKAKGRP  DIAK        V FK  + +R+ FW  +W G   L   F D + +SLK
Sbjct: 280 PKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKWAGNLPLLDEFPDMFALSLK 339

Query: 73  E-VIIVECCNGNSDDWELGFRRRPLD 98
           +   + +C N  +  W+L  RR   D
Sbjct: 340 QNAYVKDCWNEENQTWDLALRRGLFD 365

[Close]

BLAST of Spg008437 vs. ExPASy TrEMBL
Match: A0A7N2ML02 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-04
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 27  KKGYMLFNFVAFKERKD-NRIKFWKHRWIGCCSLEASFSDSYNISL---KEVIIVECCNG 86
           + G+M F+ +   E +D  R+KFWKH W G  +L+ +F + Y IS      V  V C +G
Sbjct: 72  RSGWMSFSKLLLYEVEDGTRVKFWKHVWCGDRTLQEAFPELYCISRTKDSSVAEVMCWSG 131

Query: 87  NSDDWELGFRRRPLDKEFKSW 104
               W+  FRR P D E +S+
Sbjct: 132 GRIHWDAKFRRPPQDWEQESF 152

The following BLAST results are available for this feature:

BLAST of Spg008437 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158566.1	4.8e-08	39.53	uncharacterized protein LOC111025019 [Momordica charantia]	[more]

BLAST of Spg008437 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008437 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E196	2.3e-08	39.53	uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A7N2ML02	7.7e-04	37.04	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Spg008437 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008437.1	Spg008437.1	mRNA