Spg004558.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCTGATGGTACAAACATCCCAACCTTCGAGGCACGCACATGTGCTTCGTGTTGCATGTCTATAGGATTTTCTGATGAAGATTTGCTGCTAGGGTTGAAGCCTCACAATAGACCTTTATTCGTCTTGGGATACATCCGAGAACAGAGGGTTAGTTGAATCCTCATCGATGATGGATCAGCTATCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTCAATGGAAGAACTATCAAACAGTAAATTGGTGATTCAAAGTTTCAAACAAGGCGGCCAACGAGCGATTGGCATGATACGCCTCGAGCTCATCATTGGGGATTTGAAGGCTAATACTTTGTTTCATGTGATAGATTCCAAGACCACTTATAAGCTACTATTAGGTCATCCTTGGATCCATGGCAATGGAGTGATAACTTCTACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATTAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACAGAGGGGAGACTATACTTGCAGAAATCCCCTTGATAAAAAAGAATGAGAAACTCAATTTAGAACCACAAGCTGATGCAAGAAGGGAAGTTGTTGAAGATGTGCAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGAGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCTTACGATACGTCCCATTATCTCGATGTAAAAAGGGTGAATCACCTTTCGCAGAATGCCAAAAAAACTTAAAGGTCAGTGACGTTGAAATTATGAAGGAAAGTTTCACTACACCTCTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAGGATGACCAGATAAAAATGATCTTGCCTGACAAATGAACTAAAGACGGGTTTGACCCCAAGGCATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTTTAAGGGTTTTTTATGAAAGATATGAGCTCTCTGCAACACAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAATGAAAAGATCACGAAGGTCGATGGAGAAATTCGTAGTACAGTTCCTTCACGAATGAAAAGAAAAACCTTTGTTACTGTCGATACAGATGGTTCCTTGAAGGTAAAGCGACGTGATGTTGTCATCACCAATCCTTCGGAAGAAGTGACGGAAGAGATTGTCGCGGTCTCTTGTCAAATAAATTTATAATCCACAACCTCTAAAGCTAACTTGTAGTAGTAGTGGCCGGGGTCGAACACAGGGAGCACGATTATAACTTGTTTATCGTAGATTTATTGTGATGACCGAACTAATGGGGGGTTTTAATACTTGGAAAGAAATAATAATGGAAAGCAAGCTAATTAAGGAAAACAATAGGAAAGGAAAGTAAGAGAATTAAAGAAAGAAATCAGTACCTTAAAGATCATGCAACCGGGTTAGTCATGGTAAGTTCAATTCAATTAAATCATCAATTTCACTAATAATTCAAAACAAGTTTAAGCCCGACGTATTCCGGCAACAAACCGAGAATCATGATCCACTATCACAAACATGCAAACGCTAAGTTTGATCCTAGTTTAAATTAATTAATATGCCTATTACCTAATCTAAACCGCATTGGGATCTAGCAGAATTAATTCACATGCAACGGGCAACAAACCACAATTACAATTGATTAAATCATTTAGTTCTAGGGACGCATGCGTATAATCATAACGCTAACCTATTTGCTACTAAGATTTAGCAAGTAAATTTAGAGAGGGAGCGGTCAAGGTTGTCAATCTTTCCTACCACAATCTAAACTTATAGAAAAAGAACTAAAATCACATAAACATGCTTTGATAATTCAAACAAGAAATTTCATTAAAAGAATATGAACTTACTCTTGACACCCCGGTTACATGAATGAAGAACTTAGCCTCTTATGGAGCAAGAACAAGCTTGATACATAAAGAAAAGCAAGAAAGAACTAAGAAGAATGGTGGAAAGGGGGAGAGAGATGGACTACAAAGTTGTAGTGAATTGTGTGTTGAGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGGGATTCTTGGCCTTCAATTCGTGGTAGAATGGTGCTGAATTAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGATGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCCTTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCTGATGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAATGAAAAGATCACGAAGATGGTTCCTTGAAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGATGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCCTTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCTGATGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAATGAAAAGATCACGAAGATGGTTCCTTGAAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGATGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCCTTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA MKGSQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTRPSVFQRLSVTTRMKRSRRWFLEGLQTWKKSQPNMENFNSGNCLASRCCGPSVATLGLQVRKRFCGSRSVATLPLQLRANAFFPYLSSVPKPRLKGLDAVMSPRAEWSFYAPVSLV Homology
BLAST of Spg004558.1 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 121.7 bits (304), Expect = 1.4e-23 Identity = 72/138 (52.17%), Postives = 89/138 (64.49%), Query Frame = 0
BLAST of Spg004558.1 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 72.0 bits (175), Expect = 1.3e-08 Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 0
HSP 2 Score: 120.2 bits (300), Expect = 4.2e-23 Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 0
BLAST of Spg004558.1 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]) HSP 1 Score: 118.6 bits (296), Expect = 1.2e-22 Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 0
BLAST of Spg004558.1 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]) HSP 1 Score: 117.9 bits (294), Expect = 2.1e-22 Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 0
BLAST of Spg004558.1 vs. NCBI nr
Match: KAA0039557.1 (uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK01742.1 uncharacterized protein E5676_scaffold775G00710 [Cucumis melo var. makuwa]) HSP 1 Score: 117.5 bits (293), Expect = 2.7e-22 Identity = 66/157 (42.04%), Postives = 102/157 (64.97%), Query Frame = 0
BLAST of Spg004558.1 vs. ExPASy TrEMBL
Match: A0A5D3DB95 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00330 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23 Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 0
BLAST of Spg004558.1 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 5.9e-23 Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 0
BLAST of Spg004558.1 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.3e-22 Identity = 66/157 (42.04%), Postives = 102/157 (64.97%), Query Frame = 0
BLAST of Spg004558.1 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 3.8e-22 Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
HSP 2 Score: 117.1 bits (292), Expect = 1.7e-22 Identity = 67/156 (42.95%), Postives = 100/156 (64.10%), Query Frame = 0
BLAST of Spg004558.1 vs. ExPASy TrEMBL
Match: A0A5A7TY01 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00180 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 3.8e-22 Identity = 68/163 (41.72%), Postives = 105/163 (64.42%), Query Frame = 0
The following BLAST results are available for this feature:
Pages
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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