Spg004558 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004558
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold9: 12159733 .. 12163088 (+)
RNA-Seq ExpressionSpg004558
SyntenySpg004558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCTGATGGTACAAACATCCCAACCTTCGAGGCACGCACATGTGCTTCGTGTTGCATGTCTATAGGATTTTCTGATGAAGATTTGCTGCTAGGGTTGAAGCCTCACAATAGACCTTTATTCGTCTTGGGATACATCCGAGAACAGAGGGTTAGTTGAATCCTCATCGATGATGGATCAGCTATCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTCAATGGAAGAACTATCAAACAGTAAATTGGTGATTCAAAGTTTCAAACAAGGCGGCCAACGAGCGATTGGCATGATACGCCTCGAGCTCATCATTGGGGATTTGAAGGCTAATACTTTGTTTCATGTGATAGATTCCAAGACCACTTATAAGCTACTATTAGGTCATCCTTGGATCCATGGCAATGGAGTGATAACTTCTACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATTAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACAGAGGGGAGACTATACTTGCAGAAATCCCCTTGATAAAAAAGAATGAGAAACTCAATTTAGAACCACAAGCTGATGCAAGAAGGGAAGTTGTTGAAGATGTGCAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGAGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCTTACGATACGTCCCATTATCTCGATGTAAAAAGGGTGAATCACCTTTCGCAGAATGCCAAAAAAACTTAAAGGTCAGTGACGTTGAAATTATGAAGGAAAGTTTCACTACACCTCTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAGGATGACCAGATAAAAATGATCTTGCCTGACAAATGAACTAAAGACGGGTTTGACCCCAAGGCATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTTTAAGGGTTTTTTATGAAAGATATGAGCTCTCTGCAACACAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAATGAAAAGATCACGAAGGTCGATGGAGAAATTCGTAGTACAGTTCCTTCACGAATGAAAAGAAAAACCTTTGTTACTGTCGATACAGATGGTTCCTTGAAGGTAAAGCGACGTGATGTTGTCATCACCAATCCTTCGGAAGAAGTGACGGAAGAGATTGTCGCGGTCTCTTGTCAAATAAATTTATAATCCACAACCTCTAAAGCTAACTTGTAGTAGTAGTGGCCGGGGTCGAACACAGGGAGCACGATTATAACTTGTTTATCGTAGATTTATTGTGATGACCGAACTAATGGGGGGTTTTAATACTTGGAAAGAAATAATAATGGAAAGCAAGCTAATTAAGGAAAACAATAGGAAAGGAAAGTAAGAGAATTAAAGAAAGAAATCAGTACCTTAAAGATCATGCAACCGGGTTAGTCATGGTAAGTTCAATTCAATTAAATCATCAATTTCACTAATAATTCAAAACAAGTTTAAGCCCGACGTATTCCGGCAACAAACCGAGAATCATGATCCACTATCACAAACATGCAAACGCTAAGTTTGATCCTAGTTTAAATTAATTAATATGCCTATTACCTAATCTAAACCGCATTGGGATCTAGCAGAATTAATTCACATGCAACGGGCAACAAACCACAATTACAATTGATTAAATCATTTAGTTCTAGGGACGCATGCGTATAATCATAACGCTAACCTATTTGCTACTAAGATTTAGCAAGTAAATTTAGAGAGGGAGCGGTCAAGGTTGTCAATCTTTCCTACCACAATCTAAACTTATAGAAAAAGAACTAAAATCACATAAACATGCTTTGATAATTCAAACAAGAAATTTCATTAAAAGAATATGAACTTACTCTTGACACCCCGGTTACATGAATGAAGAACTTAGCCTCTTATGGAGCAAGAACAAGCTTGATACATAAAGAAAAGCAAGAAAGAACTAAGAAGAATGGTGGAAAGGGGGAGAGAGATGGACTACAAAGTTGTAGTGAATTGTGTGTTGAGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGGGATTCTTGGCCTTCAATTCGTGGTAGAATGGTGCTGAATTAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGATGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCCTTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA

mRNA sequence

ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCTGATGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAATGAAAAGATCACGAAGATGGTTCCTTGAAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGATGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCCTTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA

Coding sequence (CDS)

ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCTGATGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACCACGAGAATGAAAAGATCACGAAGATGGTTCCTTGAAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGATGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCCTTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA

Protein sequence

MKGSQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTRPSVFQRLSVTTRMKRSRRWFLEGLQTWKKSQPNMENFNSGNCLASRCCGPSVATLGLQVRKRFCGSRSVATLPLQLRANAFFPYLSSVPKPRLKGLDAVMSPRAEWSFYAPVSLV
Homology
BLAST of Spg004558 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-23
Identity = 72/138 (52.17%), Postives = 89/138 (64.49%), Query Frame = 0

Query: 154 GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVF 213
           GLGYKSPEP+RI R GK KV D NHITV+EVD  KEKE   QRTS F R  P VAR  VF
Sbjct: 862 GLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTSAFDRISPHVARTPVF 921

Query: 214 QRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEE 273
           +RLS+ E E ++ Q+T+N  R S F+RL+M   +E         TRPSAF+RL+M    +
Sbjct: 922 ERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTTRPSAFERLSM---AK 981

Query: 274 ENTLSTPNVTRPSVFQRL 292
           +  + TP   RP +F RL
Sbjct: 982 KKNVQTP---RPPIFNRL 993

BLAST of Spg004558 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-08
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 0

Query: 4   SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPV 63
           S+EK  SI++++EGW  V R KK+K +  +KESR +R+ +R  K+++ K+KKK+++ K  
Sbjct: 411 SREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRNYRRGNKAEKNKKKKKTQKLK-- 470

Query: 64  VEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDDDVPTSSSGTVAGP 123
                                    D+N       V CH ++  E++ +P  S       
Sbjct: 471 ------------------------FDEN----LGVVACHAINATEEESIPLRSLEEEEVS 529

Query: 124 GDLSSFSIKDLLSLPQEAKSVLINALIES 153
            DLS F++ DLLSLPQ+ K +LINAL+ S
Sbjct: 531 KDLSRFNVDDLLSLPQKTKIILINALLNS 529


HSP 2 Score: 120.2 bits (300), Expect = 4.2e-23
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 154 GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVF 213
           GL YKSPEP+RI R GK KV D+NHITV+EVD  +EKE   QRTS F R  P VARA VF
Sbjct: 5   GLEYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDSQRTSAFDRISPHVARAPVF 64

Query: 214 QRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEE 273
           +RLS+ E E ++ Q+T+N  R S F+RL++   EE   +     T+PSAF+RL++   + 
Sbjct: 65  ERLSMTEAERKDHQSTSNLDRRSAFQRLTITFKEEKGIWQASMTTKPSAFERLSITKKKN 124

Query: 274 ENTLSTPNVTR 285
             T   PN+ R
Sbjct: 125 AQTPRAPNINR 135

BLAST of Spg004558 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-22
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 0

Query: 125 DLSSFSIKDLLSLPQEAKSVLINALI---ESDGLGYKSPEPVRIIRGGKAKVEDTNHITV 184
           D  S  I +   L    K +L    +      GLGYKSPEP+RI R GK KV D+NHITV
Sbjct: 251 DFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITV 310

Query: 185 EEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRL 244
           +EVD  +EKE  +QRTS F R  P VARA VF+RLS+ E E ++ Q+T+N  + S F+RL
Sbjct: 311 KEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRL 370

Query: 245 SMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTR 285
           ++   EE         T+PSAF+RL++   +   T   P + R
Sbjct: 371 TITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIINR 413

BLAST of Spg004558 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-22
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 154 GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVF 213
           GLGYKSPEP+RI R GK KV D NHITV+EVD  +EKE  +QRTS F R  P VARA VF
Sbjct: 309 GLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVF 368

Query: 214 QRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEE 273
           +RLS+ E + ++ Q+T+N  R S F+RL++   EE         T+PSAF+RL++   + 
Sbjct: 369 ERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKN 428

Query: 274 ENTLSTPNVTR 285
             T   P + R
Sbjct: 429 AQTPRAPIINR 439

BLAST of Spg004558 vs. NCBI nr
Match: KAA0039557.1 (uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK01742.1 uncharacterized protein E5676_scaffold775G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-22
Identity = 66/157 (42.04%), Postives = 102/157 (64.97%), Query Frame = 0

Query: 4   SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPV 63
           SQEK   I++++EGWT V R KK+K +  +KE R +R+ ++  K+Q+ K+KKK+R+ K +
Sbjct: 116 SQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLM 175

Query: 64  VEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDDDVPTSSSGTVAGP 123
            EE +DF    + +TLA++FP  FL D+Q+E    V CH ++ +E++++P  S       
Sbjct: 176 HEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVS 235

Query: 124 GDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP 161
            DLS F++ DLLSLPQE K +LINAL+ S      +P
Sbjct: 236 KDLSRFNVNDLLSLPQETKIILINALLNSTASSSSAP 272

BLAST of Spg004558 vs. ExPASy TrEMBL
Match: A0A5D3DB95 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00330 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 154 GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVF 213
           GL YKSPEP+RI R GK KV D+NHITV+EVD  +EKE   QRTS F R  P VARA VF
Sbjct: 5   GLEYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDSQRTSAFDRISPHVARAPVF 64

Query: 214 QRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEE 273
           +RLS+ E E ++ Q+T+N  R S F+RL++   EE   +     T+PSAF+RL++   + 
Sbjct: 65  ERLSMTEAERKDHQSTSNLDRRSAFQRLTITFKEEKGIWQASMTTKPSAFERLSITKKKN 124

Query: 274 ENTLSTPNVTR 285
             T   PN+ R
Sbjct: 125 AQTPRAPNINR 135

BLAST of Spg004558 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.9e-23
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 0

Query: 125 DLSSFSIKDLLSLPQEAKSVLINALI---ESDGLGYKSPEPVRIIRGGKAKVEDTNHITV 184
           D  S  I +   L    K +L    +      GLGYKSPEP+RI R GK KV D+NHITV
Sbjct: 251 DFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITV 310

Query: 185 EEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRL 244
           +EVD  +EKE  +QRTS F R  P VARA VF+RLS+ E E ++ Q+T+N  + S F+RL
Sbjct: 311 KEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRL 370

Query: 245 SMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTR 285
           ++   EE         T+PSAF+RL++   +   T   P + R
Sbjct: 371 TITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIINR 413

BLAST of Spg004558 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-22
Identity = 66/157 (42.04%), Postives = 102/157 (64.97%), Query Frame = 0

Query: 4   SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPV 63
           SQEK   I++++EGWT V R KK+K +  +KE R +R+ ++  K+Q+ K+KKK+R+ K +
Sbjct: 116 SQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLM 175

Query: 64  VEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDDDVPTSSSGTVAGP 123
            EE +DF    + +TLA++FP  FL D+Q+E    V CH ++ +E++++P  S       
Sbjct: 176 HEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVS 235

Query: 124 GDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP 161
            DLS F++ DLLSLPQE K +LINAL+ S      +P
Sbjct: 236 KDLSRFNVNDLLSLPQETKIILINALLNSTASSSSAP 272

BLAST of Spg004558 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-22
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0

Query: 154 GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVF 213
           GLGYKSPEP+RI R GK KV D+NHITV+EVD  +E E   QRTS F R  P VAR  VF
Sbjct: 604 GLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEYEGDSQRTSAFDRISPHVARTPVF 663

Query: 214 QRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEE 273
           +RLS+ E E ++ Q+T+N  R SVF+RL++   EE         T+PSAF+RL++   + 
Sbjct: 664 ERLSMTEAERKDHQSTSNLDRRSVFQRLTITFKEEKGICQTSMSTKPSAFERLSITKKKN 723

Query: 274 ENTLSTPNVTR 285
             T   P + R
Sbjct: 724 AQTPRAPIINR 734


HSP 2 Score: 117.1 bits (292), Expect = 1.7e-22
Identity = 67/156 (42.95%), Postives = 100/156 (64.10%), Query Frame = 0

Query: 5   QEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVV 64
           QEK  SI+ ++EGWT V R KK+K +  +KE R +R+ +R  K+Q+ K+KKK+++ K + 
Sbjct: 93  QEKERSIEKDDEGWTIVTRRKKRKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKLIN 152

Query: 65  EESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDDDVPTSSSGTVAGPG 124
           EE +DF    + +TLA +FP  FL D+Q+E  E V CH +D +E++ +P  S        
Sbjct: 153 EEDKDFPRTQRLVTLANFFPTRFLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGVSK 212

Query: 125 DLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP 161
           DL  F++ DLLSLPQE K++LINAL+ S      +P
Sbjct: 213 DLLRFNVDDLLSLPQETKTILINALLNSVASSSSAP 248

BLAST of Spg004558 vs. ExPASy TrEMBL
Match: A0A5A7TY01 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00180 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-22
Identity = 68/163 (41.72%), Postives = 105/163 (64.42%), Query Frame = 0

Query: 1   MKGSQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRS 60
           ++ S  K  SI+++NEGW  V R  K+K +  +KES  +R+ +R+ K+Q+ K+KKK+R+ 
Sbjct: 152 LEDSHVKERSIEEDNEGWIVVTRRMKRKSTLTQKESSFYRNYRRRNKAQKNKKKKKTRKP 211

Query: 61  KPVVEESEDFFCHPQP---ITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDDDVPTSSS 120
           K V EE +DF   PQP   +T+A+ FP  FL D+Q+E  E +TCH ++  E++ +P+ S 
Sbjct: 212 KLVHEEDKDF---PQPQRLVTMADLFPTRFLCDHQDENPEVITCHTINATEEESIPSRSL 271

Query: 121 GTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP 161
                  +LS F++ DLLSLPQE K++LINAL+ S      +P
Sbjct: 272 EEEGMSKNLSRFNMDDLLSLPQETKTILINALLNSGASSSSTP 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042067.11.4e-2352.17retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos... [more]
KAA0042067.11.3e-0834.23retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos... [more]
TYK28162.11.2e-2243.56uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa][more]
KAA0055957.12.1e-2249.62uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa][more]
KAA0039557.12.7e-2242.04uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK0... [more]

Pages

Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DB952.0e-2350.38RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DXC75.9e-2343.56Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BSG51.3e-2242.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BSG53.8e-2249.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TY013.8e-2241.72Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004558.1Spg004558.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process