Spg004157.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGAGTACGCTTAGCCTTAAATTTTGTAGAATTATGAATTCTTTGATGTTTTGCCAATGTATTTGGTATTTTGACGAACCTAATTAAAATACGATTCGGTCCAATTGCTTTCGCTTTAACAGAATTCGAAATTCCAATCCTTCAGATAGGGCATTATGTGATCTGGGAGCGAGTATTAATCTTATGTCTTATTCCCTTTTCAGGAAAACAAGACTTACTGGACTTAAAGACACTAACATAACCCTCCAGCTGGCGGACCGATCAGTTACTCTCCCGATGGGGATCTTGGAGGACGTGTTAGTGAAGGTAAATAAGTTCATTTTTCCTGTAGACTTCGTAGTGTTGGACATGTAGAAGGACAAAGAAGTGCCCATCATTCCTCGTAGACCATTTCTAGCCACAGGTAAGGCTGAAATTAGTGTTTATACGGGTAAGTTGACTCTTAGTGTAGATGATGAAAAGGTAGTTTTCAGTATCGTTGGTCATGATGAGTCTGTCTGCAGTATACATACTTGTTTTTCTATTGGCCTAGAATTTCTACCTAATGAGGATGATGAAGAAGAGTTAAACTTAGCCCTAGAGTTAGAAGGTCTTCTATGGATGATGATAATTTTGATCCTGGTTAGTTTTTCGATGATATCATGTTTGAGAATGAGTTGATGAATGAATTTGACTTGCCTGCTTTGAATTTGGATGAGCATGAATTAGATAGCATTTTTTATTATGATGAGAATGAGTTAGGTGATAACATTATACAGTCTAATATAGTTACTGAGTCTCATGATCATGTACAGTTTATGCCTGATGAATGGTTAGTCCTTGTAGATAGACCACCCCAGGATCCGAGACCGGTAGACATTTTGATGCTGGATGACTCTGTGAATAACAGTTTTGTGAATAGAGATTTGGAAAAAAGTTTTGATGTGATAGGATTTTTTTATGCAAAGTTATTTTGACAACTTGTATAGTGAAGATGGGCTAGGGGAGATGTTTTTCAGTCCCCTGTTTGCGATGTGTGCTACAGCACGAGATTTTATCAGAGGCCCAGAGGAGGATGAAAATTTTTACTTCGAACCTCCACGAGCGTGTCGAGCTTCGTCTAGCTAAAAACGTTAAAGAAAGTGTTGCTTGGGAGGAAACCCAAGGATTTAAACTTTTTTAATAGTTTTTCCTTTTGCGGTTAATAAATCCCCCTTGCTTCGTGATCCAATTCTGTTTTGCAGGATCCGCGTAGCAAGCCCCGAGAAATTCAAGGATGCGCTTTCCTGGCCTCGAAGGATGAGGACGTTTTCTCCTGGACTTAGGGAAGTCTCAGTATCCCCTCTTTATGCTTTATTGCTTTAAAACACTGAGAACAATGTTTAGTTTAAGTTTGGGGGGGGGGGGGGAGACTTTCGCTGTGTTTGAGCTTAGTTTAAATTTTTCTTGATACATTTTAGGATATCAATGATAGTCGAGGATTTGGTTTTTGAGTTTTTAGGGGATATGGTTTTTATGATGTTTAATTTGGGAGCATAGCAGAAACATGAGAAATTTTGAAAATGTTTTGCTTAGTATTAATGTCTAAAGCATGCAATAAACTTGTCATTTGAGATCTTTGAAAATCTAGATTCTTATTATGGTTTTTATAAGTTTGTTGTCACTCTGATAGACTTAGTCTCTAGCACTAGGAGTTATGCTTGACTGTTTTTAAGAACTAGGTGAAAAGAAAAAGAAAATATGTTATGCCTGCAAAAAGAAAAGCTATAAACTCGAGACTTCCCTAGGATTATTTTCTCTTGTCATCAATTGGTGGTTTCATTGTTGGACTAAGTTGTTGGAACTTACTAATTTAAAAGAAGAAATGGAATAAAGAAGAAAAAGAAAAGAAAATAAAAGGGAAAAAGAAAATGAAATATGGAAATGAAAAAAAAAATAAAGAAAGAAAAAGAAAGAAATTGGGAAAGCACTTTCGGTGCTTAATGGACAAAATAAAAACCCACCACCGCTACACCCTTTTTCAGTCCATTTCTCCATCTTTTTCCAACCAAATTTCAGAGCATTTGAGGGAGAGAGTGAAGGAAGAAGTAGAAGAAGAATTTCGGGGTTTTGAGGTTGAAGAAGATAGGAAAAAGCTCAAGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGATTTGATTTTCTTGAAAGTTAGTCCATTTTCTAACAAATTTCATGAAGGAAACTTGAGCTAAATCTGATCATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTGGAGCAGTATGGGGTGTACAAGCTGAATCAGAAGCTTTATTTTGTATGGCTGGAAATCTTATTCAATTTCCTATAACTTTCAAGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTATTGTCTGTGTTCGGGGCGTTTCTGGACAGATTGGTTGGGAATCTCGTTTTCATTTCTTTAGGTAAGTTTTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTAGTATATTAATTTTGGTTAAGTATTGAGGAAGTTATGAGTGTTGGAAGTTGTGGTATTGAATCTGGAAAATCTAGAAAAGTAGAATGTGAAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAGAATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTGAGTGACAAAACAAATTTCGAAAATTGTTTCTAAACGGTTGTTCATGATTAGATGTCTTATGTGTTTTTTCCTATGAATGATACATGATCTCTATTAACGGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTGTATACGAGCACGTGGTTAATGACTTAATGAAAAGTAGTTGAAACGATATTATTTTAAGTAAAGAATGTATTAGCAAGTACTATTTAAAGATTTTCAGTTTTTAACGAGCAAGCTGAATAAGCTTAAGTTTTACGAAAGATAATGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTAAATGGTACCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACATAGACGATGAGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGGTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACCTGCGATGTTTTAAGAAAACTTTTATCGTTGCACGTTTATTTTTAACGTTTTGGTTGAGCAGCTTTATACGTTTAAAGTTTTATCATGTGTTCTGATTTCCGAATTTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGTTCATTCTTTCAAAATATTTTCCCACTTTTCAGGTAGAGATTGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAAGGATTGGATGATTTACGATTTATTTTAAGTTCTAGAGGTCGTGGTTATATAAACCCCAGTTGAATATGTTTTGGGTTGTGATACCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCGTGTATGTTAAAAGGTTTTCAGGGATTTCGCTGTGTTGTGTTTCATGTAGAATATTTTATAACTAAGATTGGTACGTTTATCAGGTTCAACGTTCCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTAAGCTAGAAGGTGGTCCAGGAGGGGGTGTGACAAAAGCAACACTAGAAAAAAGAATTATCTGTTGAGAAAAGAAAATAATTTTTGCTTGCAAGAGAAAAATAGACTAAGGGTAAAAAGAGTTGCCTCCGTTGTGATCAGTTAGGATCATCCAAGGATTAAATGCGGGATATGGGTCATTGCAGCGGTGTGTGAAAGCTAGTGCCCTTAGGATCATAAAAAGCAAGTTTGGCGGAATCCCCTAAGAAAAAGAAAAGAATCAGGCGCCCTAGTTTCTTTGTTTGCATGATAGCTAAATTCTGACCTGTTAGGACTCTTAGCCAGTGTAGGGGGAAAACAAATGGAAAAAGTCGTAAAACTAATCTAGGTTAGTAAAAGAACCATTAGATAAGTTTTGAGCATGATATTTGTTAATTCTAAGTTTCATATTTTTGAAATTTCTTCATGAGTATGCTATGATTGCTTAGCCCACTTGCAAGTTTTCTATATTCCCCTAAGAATTCTTAAATCATTGAGGCTAGAGCGATTCTTTTCATGCATCATTAGAATTTATTTTGCTCGGGACTAGCAAAAGCTTAAGTTTGGGGGTGTGATAGCAAGCATAAATGTTGCTATTTCGTCCTTAGACTTATTAGTTTTTGTTGTGCTTTTATTGTGTTTTTATCATATAAATCTATTTAATAGTGTAATTTTGGTTCCTAGGAGATTTATGGAAATTTGGAGAAAACGAAGAGAAAAGAAACCCAATTTGTTGGAGTTTAATCTTGAAAGATCACATTGGATCAAGTGGGAGAAGTCCAAGACCCATTATGGAAGACATTTGGGCCAAAGATTGGAGAGAAGCCTGAAATTCAACCCAAAAAACGCAAGCTGGAAGATTTTGGCCGAAGGACAGCGTCGAGACGTTGTCTCTTAGCGTCTCGACGCTGGGATGACTTGCTGCCCAAGATGAATACGTCACAGCGTCGCAACGCTGTCCCATTTCCAGCCCTACAAATAGCGCGACTCACCTCCCCATTTGATCATCAATCAATTCTCCAATTCATTTCTTTAGTCCTTTCAAGGCTCTTGGAGCCTCCCTTGAGGGTCGAGTTGTGA ATGTTTTTCGATGATATCATGTTTGAGAATGAGTTGATGAATGAATTTGACTTGCCTGCTTTGAATTTGGATGAGCATGAATTAGATAGCATTTTTTATTATGATGAGAATGAGTTAGGTGATAACATTATACAGTCTAATATAGTTACTGAGTCTCATGATCATGTACAGTTTATGCCTGATGAATGGTTAGTCCTTGTAGATAGACCACCCCAGGATCCGAGACCGGTAGACATTTTGATGCTGGATGACTCTGTGAATAACAGTTTTGTGAATAGAGATTTGGAAAAAAAGCACAAGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTGGAGCAGTATGGGGTGTACAAGCTGAATCAGAAGCTTTATTTTATTGGTTGGGAATCTCGTTTTCATTTCTTTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATTGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTAAGCTAGAAGGTGGTCCAGGAGGGGTGGGAGAAGTCCAAGACCCATTATGGAAGACATTTGGGCCAAAGATTGGAGAGAAGCCTGAAATTCAACCCAAAAAACGCAAGCTGGAAGATTTTGGCCGAAGGACAGCGTCGAGACGTTGTCTCTTAGCGTCTCGACGCTGGGATGACTTGCTGCCCAAGATGAATACGTCACAGCGTCGCAACGCTGTCCCATTTCCAGCCCTACAAATAGCGCGACTCACCTCCCCATTTGATCATCAATCAATTCTCCAATTCATTTCTTTAGTCCTTTCAAGGCTCTTGGAGCCTCCCTTGAGGGTCGAGTTGTGA ATGTTTTTCGATGATATCATGTTTGAGAATGAGTTGATGAATGAATTTGACTTGCCTGCTTTGAATTTGGATGAGCATGAATTAGATAGCATTTTTTATTATGATGAGAATGAGTTAGGTGATAACATTATACAGTCTAATATAGTTACTGAGTCTCATGATCATGTACAGTTTATGCCTGATGAATGGTTAGTCCTTGTAGATAGACCACCCCAGGATCCGAGACCGGTAGACATTTTGATGCTGGATGACTCTGTGAATAACAGTTTTGTGAATAGAGATTTGGAAAAAAAGCACAAGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTGGAGCAGTATGGGGTGTACAAGCTGAATCAGAAGCTTTATTTTATTGGTTGGGAATCTCGTTTTCATTTCTTTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATTGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTAAGCTAGAAGGTGGTCCAGGAGGGGTGGGAGAAGTCCAAGACCCATTATGGAAGACATTTGGGCCAAAGATTGGAGAGAAGCCTGAAATTCAACCCAAAAAACGCAAGCTGGAAGATTTTGGCCGAAGGACAGCGTCGAGACGTTGTCTCTTAGCGTCTCGACGCTGGGATGACTTGCTGCCCAAGATGAATACGTCACAGCGTCGCAACGCTGTCCCATTTCCAGCCCTACAAATAGCGCGACTCACCTCCCCATTTGATCATCAATCAATTCTCCAATTCATTTCTTTAGTCCTTTCAAGGCTCTTGGAGCCTCCCTTGAGGGTCGAGTTGTGA MFFDDIMFENELMNEFDLPALNLDEHELDSIFYYDENELGDNIIQSNIVTESHDHVQFMPDEWLVLVDRPPQDPRPVDILMLDDSVNNSFVNRDLEKKHKIFEQTRRISGFLWFLEQYGVYKLNQKLYFIGWESRFHFFRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLEGGPGGVGEVQDPLWKTFGPKIGEKPEIQPKKRKLEDFGRRTASRRCLLASRRWDDLLPKMNTSQRRNAVPFPALQIARLTSPFDHQSILQFISLVLSRLLEPPLRVEL Homology
BLAST of Spg004157.1 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa]) HSP 1 Score: 85.5 bits (210), Expect = 9.0e-13 Identity = 67/167 (40.12%), Postives = 82/167 (49.10%), Query Frame = 0
BLAST of Spg004157.1 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 77.0 bits (188), Expect = 3.2e-10 Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0
BLAST of Spg004157.1 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 77.0 bits (188), Expect = 3.2e-10 Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0
BLAST of Spg004157.1 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa]) HSP 1 Score: 77.0 bits (188), Expect = 3.2e-10 Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = 0
BLAST of Spg004157.1 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 74.3 bits (181), Expect = 2.1e-09 Identity = 67/176 (38.07%), Postives = 75/176 (42.61%), Query Frame = 0
BLAST of Spg004157.1 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13 Identity = 67/167 (40.12%), Postives = 82/167 (49.10%), Query Frame = 0
BLAST of Spg004157.1 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10 Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = 0
BLAST of Spg004157.1 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10 Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0
BLAST of Spg004157.1 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10 Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0
BLAST of Spg004157.1 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09 Identity = 67/176 (38.07%), Postives = 75/176 (42.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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