Spg004157 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004157
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold9: 14461810 .. 14466981 (-)
RNA-Seq ExpressionSpg004157
SyntenySpg004157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGTACGCTTAGCCTTAAATTTTGTAGAATTATGAATTCTTTGATGTTTTGCCAATGTATTTGGTATTTTGACGAACCTAATTAAAATACGATTCGGTCCAATTGCTTTCGCTTTAACAGAATTCGAAATTCCAATCCTTCAGATAGGGCATTATGTGATCTGGGAGCGAGTATTAATCTTATGTCTTATTCCCTTTTCAGGAAAACAAGACTTACTGGACTTAAAGACACTAACATAACCCTCCAGCTGGCGGACCGATCAGTTACTCTCCCGATGGGGATCTTGGAGGACGTGTTAGTGAAGGTAAATAAGTTCATTTTTCCTGTAGACTTCGTAGTGTTGGACATGTAGAAGGACAAAGAAGTGCCCATCATTCCTCGTAGACCATTTCTAGCCACAGGTAAGGCTGAAATTAGTGTTTATACGGGTAAGTTGACTCTTAGTGTAGATGATGAAAAGGTAGTTTTCAGTATCGTTGGTCATGATGAGTCTGTCTGCAGTATACATACTTGTTTTTCTATTGGCCTAGAATTTCTACCTAATGAGGATGATGAAGAAGAGTTAAACTTAGCCCTAGAGTTAGAAGGTCTTCTATGGATGATGATAATTTTGATCCTGGTTAGTTTTTCGATGATATCATGTTTGAGAATGAGTTGATGAATGAATTTGACTTGCCTGCTTTGAATTTGGATGAGCATGAATTAGATAGCATTTTTTATTATGATGAGAATGAGTTAGGTGATAACATTATACAGTCTAATATAGTTACTGAGTCTCATGATCATGTACAGTTTATGCCTGATGAATGGTTAGTCCTTGTAGATAGACCACCCCAGGATCCGAGACCGGTAGACATTTTGATGCTGGATGACTCTGTGAATAACAGTTTTGTGAATAGAGATTTGGAAAAAAGTTTTGATGTGATAGGATTTTTTTATGCAAAGTTATTTTGACAACTTGTATAGTGAAGATGGGCTAGGGGAGATGTTTTTCAGTCCCCTGTTTGCGATGTGTGCTACAGCACGAGATTTTATCAGAGGCCCAGAGGAGGATGAAAATTTTTACTTCGAACCTCCACGAGCGTGTCGAGCTTCGTCTAGCTAAAAACGTTAAAGAAAGTGTTGCTTGGGAGGAAACCCAAGGATTTAAACTTTTTTAATAGTTTTTCCTTTTGCGGTTAATAAATCCCCCTTGCTTCGTGATCCAATTCTGTTTTGCAGGATCCGCGTAGCAAGCCCCGAGAAATTCAAGGATGCGCTTTCCTGGCCTCGAAGGATGAGGACGTTTTCTCCTGGACTTAGGGAAGTCTCAGTATCCCCTCTTTATGCTTTATTGCTTTAAAACACTGAGAACAATGTTTAGTTTAAGTTTGGGGGGGGGGGGGGAGACTTTCGCTGTGTTTGAGCTTAGTTTAAATTTTTCTTGATACATTTTAGGATATCAATGATAGTCGAGGATTTGGTTTTTGAGTTTTTAGGGGATATGGTTTTTATGATGTTTAATTTGGGAGCATAGCAGAAACATGAGAAATTTTGAAAATGTTTTGCTTAGTATTAATGTCTAAAGCATGCAATAAACTTGTCATTTGAGATCTTTGAAAATCTAGATTCTTATTATGGTTTTTATAAGTTTGTTGTCACTCTGATAGACTTAGTCTCTAGCACTAGGAGTTATGCTTGACTGTTTTTAAGAACTAGGTGAAAAGAAAAAGAAAATATGTTATGCCTGCAAAAAGAAAAGCTATAAACTCGAGACTTCCCTAGGATTATTTTCTCTTGTCATCAATTGGTGGTTTCATTGTTGGACTAAGTTGTTGGAACTTACTAATTTAAAAGAAGAAATGGAATAAAGAAGAAAAAGAAAAGAAAATAAAAGGGAAAAAGAAAATGAAATATGGAAATGAAAAAAAAAATAAAGAAAGAAAAAGAAAGAAATTGGGAAAGCACTTTCGGTGCTTAATGGACAAAATAAAAACCCACCACCGCTACACCCTTTTTCAGTCCATTTCTCCATCTTTTTCCAACCAAATTTCAGAGCATTTGAGGGAGAGAGTGAAGGAAGAAGTAGAAGAAGAATTTCGGGGTTTTGAGGTTGAAGAAGATAGGAAAAAGCTCAAGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGATTTGATTTTCTTGAAAGTTAGTCCATTTTCTAACAAATTTCATGAAGGAAACTTGAGCTAAATCTGATCATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAAGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTGGAGCAGTATGGGGTGTACAAGCTGAATCAGAAGCTTTATTTTGTATGGCTGGAAATCTTATTCAATTTCCTATAACTTTCAAGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTATTGTCTGTGTTCGGGGCGTTTCTGGACAGATTGGTTGGGAATCTCGTTTTCATTTCTTTAGGTAAGTTTTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTAGTATATTAATTTTGGTTAAGTATTGAGGAAGTTATGAGTGTTGGAAGTTGTGGTATTGAATCTGGAAAATCTAGAAAAGTAGAATGTGAAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAGAATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTGAGTGACAAAACAAATTTCGAAAATTGTTTCTAAACGGTTGTTCATGATTAGATGTCTTATGTGTTTTTTCCTATGAATGATACATGATCTCTATTAACGGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTGTATACGAGCACGTGGTTAATGACTTAATGAAAAGTAGTTGAAACGATATTATTTTAAGTAAAGAATGTATTAGCAAGTACTATTTAAAGATTTTCAGTTTTTAACGAGCAAGCTGAATAAGCTTAAGTTTTACGAAAGATAATGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTAAATGGTACCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACATAGACGATGAGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGGTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACCTGCGATGTTTTAAGAAAACTTTTATCGTTGCACGTTTATTTTTAACGTTTTGGTTGAGCAGCTTTATACGTTTAAAGTTTTATCATGTGTTCTGATTTCCGAATTTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGTTCATTCTTTCAAAATATTTTCCCACTTTTCAGGTAGAGATTGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAAGGATTGGATGATTTACGATTTATTTTAAGTTCTAGAGGTCGTGGTTATATAAACCCCAGTTGAATATGTTTTGGGTTGTGATACCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCGTGTATGTTAAAAGGTTTTCAGGGATTTCGCTGTGTTGTGTTTCATGTAGAATATTTTATAACTAAGATTGGTACGTTTATCAGGTTCAACGTTCCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTAAGCTAGAAGGTGGTCCAGGAGGGGGTGTGACAAAAGCAACACTAGAAAAAAGAATTATCTGTTGAGAAAAGAAAATAATTTTTGCTTGCAAGAGAAAAATAGACTAAGGGTAAAAAGAGTTGCCTCCGTTGTGATCAGTTAGGATCATCCAAGGATTAAATGCGGGATATGGGTCATTGCAGCGGTGTGTGAAAGCTAGTGCCCTTAGGATCATAAAAAGCAAGTTTGGCGGAATCCCCTAAGAAAAAGAAAAGAATCAGGCGCCCTAGTTTCTTTGTTTGCATGATAGCTAAATTCTGACCTGTTAGGACTCTTAGCCAGTGTAGGGGGAAAACAAATGGAAAAAGTCGTAAAACTAATCTAGGTTAGTAAAAGAACCATTAGATAAGTTTTGAGCATGATATTTGTTAATTCTAAGTTTCATATTTTTGAAATTTCTTCATGAGTATGCTATGATTGCTTAGCCCACTTGCAAGTTTTCTATATTCCCCTAAGAATTCTTAAATCATTGAGGCTAGAGCGATTCTTTTCATGCATCATTAGAATTTATTTTGCTCGGGACTAGCAAAAGCTTAAGTTTGGGGGTGTGATAGCAAGCATAAATGTTGCTATTTCGTCCTTAGACTTATTAGTTTTTGTTGTGCTTTTATTGTGTTTTTATCATATAAATCTATTTAATAGTGTAATTTTGGTTCCTAGGAGATTTATGGAAATTTGGAGAAAACGAAGAGAAAAGAAACCCAATTTGTTGGAGTTTAATCTTGAAAGATCACATTGGATCAAGTGGGAGAAGTCCAAGACCCATTATGGAAGACATTTGGGCCAAAGATTGGAGAGAAGCCTGAAATTCAACCCAAAAAACGCAAGCTGGAAGATTTTGGCCGAAGGACAGCGTCGAGACGTTGTCTCTTAGCGTCTCGACGCTGGGATGACTTGCTGCCCAAGATGAATACGTCACAGCGTCGCAACGCTGTCCCATTTCCAGCCCTACAAATAGCGCGACTCACCTCCCCATTTGATCATCAATCAATTCTCCAATTCATTTCTTTAGTCCTTTCAAGGCTCTTGGAGCCTCCCTTGAGGGTCGAGTTGTGA

mRNA sequence

ATGTTTTTCGATGATATCATGTTTGAGAATGAGTTGATGAATGAATTTGACTTGCCTGCTTTGAATTTGGATGAGCATGAATTAGATAGCATTTTTTATTATGATGAGAATGAGTTAGGTGATAACATTATACAGTCTAATATAGTTACTGAGTCTCATGATCATGTACAGTTTATGCCTGATGAATGGTTAGTCCTTGTAGATAGACCACCCCAGGATCCGAGACCGGTAGACATTTTGATGCTGGATGACTCTGTGAATAACAGTTTTGTGAATAGAGATTTGGAAAAAAAGCACAAGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTGGAGCAGTATGGGGTGTACAAGCTGAATCAGAAGCTTTATTTTATTGGTTGGGAATCTCGTTTTCATTTCTTTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATTGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTAAGCTAGAAGGTGGTCCAGGAGGGGTGGGAGAAGTCCAAGACCCATTATGGAAGACATTTGGGCCAAAGATTGGAGAGAAGCCTGAAATTCAACCCAAAAAACGCAAGCTGGAAGATTTTGGCCGAAGGACAGCGTCGAGACGTTGTCTCTTAGCGTCTCGACGCTGGGATGACTTGCTGCCCAAGATGAATACGTCACAGCGTCGCAACGCTGTCCCATTTCCAGCCCTACAAATAGCGCGACTCACCTCCCCATTTGATCATCAATCAATTCTCCAATTCATTTCTTTAGTCCTTTCAAGGCTCTTGGAGCCTCCCTTGAGGGTCGAGTTGTGA

Coding sequence (CDS)

ATGTTTTTCGATGATATCATGTTTGAGAATGAGTTGATGAATGAATTTGACTTGCCTGCTTTGAATTTGGATGAGCATGAATTAGATAGCATTTTTTATTATGATGAGAATGAGTTAGGTGATAACATTATACAGTCTAATATAGTTACTGAGTCTCATGATCATGTACAGTTTATGCCTGATGAATGGTTAGTCCTTGTAGATAGACCACCCCAGGATCCGAGACCGGTAGACATTTTGATGCTGGATGACTCTGTGAATAACAGTTTTGTGAATAGAGATTTGGAAAAAAAGCACAAGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTGGAGCAGTATGGGGTGTACAAGCTGAATCAGAAGCTTTATTTTATTGGTTGGGAATCTCGTTTTCATTTCTTTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATTGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAGACTAAGCTAGAAGGTGGTCCAGGAGGGGTGGGAGAAGTCCAAGACCCATTATGGAAGACATTTGGGCCAAAGATTGGAGAGAAGCCTGAAATTCAACCCAAAAAACGCAAGCTGGAAGATTTTGGCCGAAGGACAGCGTCGAGACGTTGTCTCTTAGCGTCTCGACGCTGGGATGACTTGCTGCCCAAGATGAATACGTCACAGCGTCGCAACGCTGTCCCATTTCCAGCCCTACAAATAGCGCGACTCACCTCCCCATTTGATCATCAATCAATTCTCCAATTCATTTCTTTAGTCCTTTCAAGGCTCTTGGAGCCTCCCTTGAGGGTCGAGTTGTGA

Protein sequence

MFFDDIMFENELMNEFDLPALNLDEHELDSIFYYDENELGDNIIQSNIVTESHDHVQFMPDEWLVLVDRPPQDPRPVDILMLDDSVNNSFVNRDLEKKHKIFEQTRRISGFLWFLEQYGVYKLNQKLYFIGWESRFHFFRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLEGGPGGVGEVQDPLWKTFGPKIGEKPEIQPKKRKLEDFGRRTASRRCLLASRRWDDLLPKMNTSQRRNAVPFPALQIARLTSPFDHQSILQFISLVLSRLLEPPLRVEL
Homology
[Close]
BLAST of Spg004157 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 9.0e-13
Identity = 67/167 (40.12%), Postives = 82/167 (49.10%), Query Frame = 0 

Query: 110 GFLWFLEQYGV---YKLNQKLYFIGWESRFHFFRPRGNRSSLQTRELAKT---------- 169
           GFL F +   +   +K NQKLY +         RPRGNR SLQT +L KT          
Sbjct: 30  GFLVFSDALSILEMHKSNQKLYLV---------RPRGNRPSLQTGKLDKTVIFSLSTLSV 89

Query: 170 -------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLEGG 229
                  VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+F+ K  GG
Sbjct: 90  LRDNDAVVEIELPVPDTLPTSAESFESNSRST------GIVRGDDVCWLHAVFRAKTAGG 149

Query: 230 PGG------------VGEVQDPLWKTFGPKIGEK--PEIQPKKRKLE 243
           PGG             G+     W+TF     EK  P+   +K++ E
Sbjct: 150 PGGGVTFNIAKGSAQQGDTSAMDWRTFRYIFEEKYYPKTYREKKRKE 181

[Close]
BLAST of Spg004157 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-10
Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0 

Query: 141 PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 200
           PRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 201 ---EGQRVS-------LEEDDVRWLHAIFQTKLEGGPGG 213
              E   V        +  DDV WLHA+F+ K  GGPGG
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]
BLAST of Spg004157 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-10
Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0 

Query: 141 PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 200
           PRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 201 ---EGQRVS-------LEEDDVRWLHAIFQTKLEGGPGG 213
              E   V        +  DDV WLHA+F+ K  GGPGG
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]
BLAST of Spg004157 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-10
Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = 0 

Query: 141 PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRSSSSSTFQ----------------- 200
           PRGNR +L T +L KTVEIELPVPDTLPTSAESS+S+SS+  +                 
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 201 ---------EGQRVSLEEDDVRWLHAIFQTKLEGGPGG 213
                    EG    +  DD+ WLHA+F  K  G PGG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGG 176

[Close]
BLAST of Spg004157 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-09
Identity = 67/176 (38.07%), Postives = 75/176 (42.61%), Query Frame = 0 

Query: 110 GFLWF---LEQYGVYKLNQKLYFIGWESRFHFFRPRGNRSSLQTRELAK----------- 169
           GFL F   L    V+K NQKLY            PRGNR  LQT EL K           
Sbjct: 274 GFLVFSDALSIQEVHKSNQKLYL-----EIDKEWPRGNRPGLQTGELDKIVIFPLSTLSV 333

Query: 170 ------TVEIELPVPDTLPTSAESSRSSSSSTFQ-------------------------- 229
                  VEIELP+PDTLPTSAESS S+SS+  +                          
Sbjct: 334 LRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDARAASYVCW 393

Query: 230 EGQRVSLEEDDVRWLHAIFQTKLEGGPGG-------VGEVQDPLWKTFGPKIGEKP 233
           EG    +  DDV WLHAIF+ K  GGPGG       V E    LW+      G KP
Sbjct: 394 EGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVSETPFELWR------GRKP 438

[Close]
BLAST of Spg004157 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 67/167 (40.12%), Postives = 82/167 (49.10%), Query Frame = 0 

Query: 110 GFLWFLEQYGV---YKLNQKLYFIGWESRFHFFRPRGNRSSLQTRELAKT---------- 169
           GFL F +   +   +K NQKLY +         RPRGNR SLQT +L KT          
Sbjct: 30  GFLVFSDALSILEMHKSNQKLYLV---------RPRGNRPSLQTGKLDKTVIFSLSTLSV 89

Query: 170 -------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLEGG 229
                  VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+F+ K  GG
Sbjct: 90  LRDNDAVVEIELPVPDTLPTSAESFESNSRST------GIVRGDDVCWLHAVFRAKTAGG 149

Query: 230 PGG------------VGEVQDPLWKTFGPKIGEK--PEIQPKKRKLE 243
           PGG             G+     W+TF     EK  P+   +K++ E
Sbjct: 150 PGGGVTFNIAKGSAQQGDTSAMDWRTFRYIFEEKYYPKTYREKKRKE 181

[Close]
BLAST of Spg004157 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = 0 

Query: 141 PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRSSSSSTFQ----------------- 200
           PRGNR +L T +L KTVEIELPVPDTLPTSAESS+S+SS+  +                 
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 201 ---------EGQRVSLEEDDVRWLHAIFQTKLEGGPGG 213
                    EG    +  DD+ WLHA+F  K  G PGG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGG 176

[Close]
BLAST of Spg004157 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0 

Query: 141 PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 200
           PRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 201 ---EGQRVS-------LEEDDVRWLHAIFQTKLEGGPGG 213
              E   V        +  DDV WLHA+F+ K  GGPGG
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]
BLAST of Spg004157 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0 

Query: 141 PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 200
           PRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 201 ---EGQRVS-------LEEDDVRWLHAIFQTKLEGGPGG 213
              E   V        +  DDV WLHA+F+ K  GGPGG
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGG 221

[Close]
BLAST of Spg004157 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 67/176 (38.07%), Postives = 75/176 (42.61%), Query Frame = 0 

Query: 110 GFLWF---LEQYGVYKLNQKLYFIGWESRFHFFRPRGNRSSLQTRELAK----------- 169
           GFL F   L    V+K NQKLY            PRGNR  LQT EL K           
Sbjct: 274 GFLVFSDALSIQEVHKSNQKLYL-----EIDKEWPRGNRPGLQTGELDKIVIFPLSTLSV 333

Query: 170 ------TVEIELPVPDTLPTSAESSRSSSSSTFQ-------------------------- 229
                  VEIELP+PDTLPTSAESS S+SS+  +                          
Sbjct: 334 LRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDARAASYVCW 393

Query: 230 EGQRVSLEEDDVRWLHAIFQTKLEGGPGG-------VGEVQDPLWKTFGPKIGEKP 233
           EG    +  DDV WLHAIF+ K  GGPGG       V E    LW+      G KP
Sbjct: 394 EGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVSETPFELWR------GRKP 438

The following BLAST results are available for this feature:
BLAST of Spg004157 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060199.19.0e-1340.12uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9... [more]
KAA0042035.13.2e-1049.49DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK17971.13.2e-1049.49DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0052218.13.2e-1045.92uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
TYK25935.12.1e-0938.07gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg004157 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004157 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BAD14.3e-1340.12Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UAH61.5e-1045.92CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TKT01.5e-1049.49Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5D3D1501.5e-1049.49Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7T9P71.0e-0938.07Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
BLAST of Spg004157 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004157.1Spg004157.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity