Spg002152.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg002152.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold2: 26269909 .. 26271778 (+)
Sequence length	696
RNA-Seq Expression	Spg002152.1
Synteny	Spg002152.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCGGGATATGGGAGCCAAGCGACGTACAACCATAGAAAAGGAAGCGAGACTGCGTGAAGCTGAAAAATTATTTCCTGTTGCGGGCGAAAGCTCACGGCAAGGAGAATCTTCAATGGGTAAAGATTTGAGTTCTTTAACTTATTCTATTGTGTGCATGGAAAAGCCAGTGGTGACATACCATTCAAAGAAAAAGAGTGCCAAGAGTTCGACTAGGAAAATTGAGACTGAAAAACCCCTGGAAATTCAGCCCCTTATGAAGGCGAGAATGTCGGCAGATGTCTTTGAGAACATTTTTTCGGCTATTTGTGGCACAAGCCCTTGTGATTGTTGAAGGGTACCGAGCTGAACAGGATTCTCTTAATGAGTTGAGAGCTGAAAAAGAAGAGCAGTTAAGAGAAATTCAGTGCATGAAGGCTGAAGAAGAATTGACTAAAAAGAGAGATGAGGAGGATGATAAAAAGATGGAAAAAGAGAAAAAATAAGAGGAGGAAAAGCAAGAGGCCGAGAGGGCCATCAGAGAAGAGAAAGAAAGAATTGAGGCTGAAGAAGATGAAAAACTAAGGAGATTGGCTGCTGAACTCCAACTCCTTGAAGAAGAGAATGCAATACAAGAAGCCCTTCGAGAAGAAGAAAATCGAAGGAATGAGGTCGAAGAATTCCTTGCAGCCTTTGAGCCTTTACACAATGCTCAAAGGGAAGGGGAAGAGTTGCAAGAAGAAGAAGAAAAGGCCCCTGAAGGGCTGATAGAAGAGGAAGCAGAAAAAGACGAAGAAGAAGACAACATGTTGCAGAATGCGACCGCATTTGGGCAACATTCTAAAGAAGGCCAAGCTGAGGCTGTAGATGGCCAACAAGGTGATGATTCCCTCGATCCATTATTTGAATATGATAAAGGGGACTAGGTCTATGGACGCCTCTCCTGTACAACCCACCACCACACCCACCAAGCCAAAACAAACACCATCAAAGAACCCGTTTCCCGAGATTTTCAAAGATGTAAATTTCCTAGAAAGAATGGAGATCATGAGGAAGTGGGAATTCTTGAATGAGAAGGGATTCTCTAATTGAGCTGGTACCTTGCCCGACTTTGTGACCAAAATCATTACACAATACAAGTGACAAGAGTTCTGTGCTCACCCTCAAGAGGGTGTGGTGCCTCTAGTCCGAGAGTTCTATGCAGGGCTGAGGGAGGAGAGTTTGAGCTTGGCGGTAGTACGTGGAAGATGATGAGTTTTTCCTCCGTCGATATAAACAGGATCTATCGGGTCAAAGCTTCTTTGCACCCAAGAGGGAATGATGCTATAAAGAATCCTTCAGCCAAACAATTAAAGGAAGCACTTAAAGTAGTGGCCAGTAAGGGAGTCCAATGGAAAAAATCTCAAACTAAAGTGAAGTCTTTAGTGCCAAGCGACCTGAAGCCTGTACTGGCAGTTTGGCTTCATTTTATAAAAAATAGATTGATGCCCACTACCCACGACAGCACAATTTCAGTAGAGAGGGTCATGCTTCTTTAAAGCATAATGAAGGGGCTGGAAATTAACATTGGGAGCATCATTCGAGAAGAGATTCTATCTTGTGGAAGAAAGAGAGCGGAGAAGCTATTCTTTGGGTCTCTCATAACCCAATTATGTCAGAGGGTCAAGATTGTTCCTGGAAAGGATGAGGAACGACATTTTTACAGACCTACCATTGACTTGCCTCTAATTGGGAAGCTGCAACAAAACAATGCACAGAGAAAAGATAAAGCTTCTGCCTCCCATGCTACTCCTTCTCTAAGGCTGACACCTGCTTCACCTCCATCACATACTCCTTTTCAGGGCCTACCCCATCTTCTGAGGCCCTCGCATTTGCTTTCTGCCAGCTAG

mRNA sequence

ATGTTGCAGAATGCGACCGCATTTGGGCAACATTCTAAAGAAGGCCAAGCTGAGGCTGTAGATGGCCAACAAGGGTGTGGTGCCTCTAGTCCGAGAGTTCTATGCAGGGCTGAGGGAGGAGAGTTTGAGCTTGGCGGTAGTACGTGGAAGATGATGAGTTTTTCCTCCGTCGATATAAACAGGATCTATCGGGTCAAAGCTTCTTTGCACCCAAGAGGGAATGATGCTATAAAGAATCCTTCAGCCAAACAATTAAAGGAAGCACTTAAAGTAGTGGCCAGTAAGGGAGTCCAATGGAAAAAATCTCAAACTAAAGTGAAGTCTTTAGTGCCAAGCGACCTGAAGCCTGTACTGGCAGGGCTGGAAATTAACATTGGGAGCATCATTCGAGAAGAGATTCTATCTTGTGGAAGAAAGAGAGCGGAGAAGCTATTCTTTGGGTCTCTCATAACCCAATTATGTCAGAGGGTCAAGATTGTTCCTGGAAAGGATGAGGAACGACATTTTTACAGACCTACCATTGACTTGCCTCTAATTGGGAAGCTGCAACAAAACAATGCACAGAGAAAAGATAAAGCTTCTGCCTCCCATGCTACTCCTTCTCTAAGGCTGACACCTGCTTCACCTCCATCACATACTCCTTTTCAGGGCCTACCCCATCTTCTGAGGCCCTCGCATTTGCTTTCTGCCAGCTAG

Coding sequence (CDS)

ATGTTGCAGAATGCGACCGCATTTGGGCAACATTCTAAAGAAGGCCAAGCTGAGGCTGTAGATGGCCAACAAGGGTGTGGTGCCTCTAGTCCGAGAGTTCTATGCAGGGCTGAGGGAGGAGAGTTTGAGCTTGGCGGTAGTACGTGGAAGATGATGAGTTTTTCCTCCGTCGATATAAACAGGATCTATCGGGTCAAAGCTTCTTTGCACCCAAGAGGGAATGATGCTATAAAGAATCCTTCAGCCAAACAATTAAAGGAAGCACTTAAAGTAGTGGCCAGTAAGGGAGTCCAATGGAAAAAATCTCAAACTAAAGTGAAGTCTTTAGTGCCAAGCGACCTGAAGCCTGTACTGGCAGGGCTGGAAATTAACATTGGGAGCATCATTCGAGAAGAGATTCTATCTTGTGGAAGAAAGAGAGCGGAGAAGCTATTCTTTGGGTCTCTCATAACCCAATTATGTCAGAGGGTCAAGATTGTTCCTGGAAAGGATGAGGAACGACATTTTTACAGACCTACCATTGACTTGCCTCTAATTGGGAAGCTGCAACAAAACAATGCACAGAGAAAAGATAAAGCTTCTGCCTCCCATGCTACTCCTTCTCTAAGGCTGACACCTGCTTCACCTCCATCACATACTCCTTTTCAGGGCCTACCCCATCTTCTGAGGCCCTCGCATTTGCTTTCTGCCAGCTAG

Protein sequence

MLQNATAFGQHSKEGQAEAVDGQQGCGASSPRVLCRAEGGEFELGGSTWKMMSFSSVDINRIYRVKASLHPRGNDAIKNPSAKQLKEALKVVASKGVQWKKSQTKVKSLVPSDLKPVLAGLEINIGSIIREEILSCGRKRAEKLFFGSLITQLCQRVKIVPGKDEERHFYRPTIDLPLIGKLQQNNAQRKDKASASHATPSLRLTPASPPSHTPFQGLPHLLRPSHLLSAS

Homology

The following BLAST results are available for this feature:

BLAST of Spg002152.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg002152.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg002152.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg002152.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..211

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg002152	Spg002152	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002152.1-five_prime_utr	Spg002152.1-five_prime_utr-scaffold2:26269909..26270233	five_prime_UTR
Spg002152.1-five_prime_utr	Spg002152.1-five_prime_utr-scaffold2:26270397..26270695	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002152.1-cds	Spg002152.1-cds-scaffold2:26270696..26270768	CDS
Spg002152.1-cds	Spg002152.1-cds-scaffold2:26271060..26271343	CDS
Spg002152.1-cds	Spg002152.1-cds-scaffold2:26271440..26271778	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg002152.1	Spg002152.1-protein	polypeptide