Sgr018827.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr018827.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Reverse transcriptase, RNA-dependent DNA polymerase
Location	tig00153210: 1049426 .. 1049776 (-)
Sequence length	351
RNA-Seq Expression	Sgr018827.1
Synteny	Sgr018827.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGATTCTCAAATCAACGTTCTTCAAGCAAATATTAATCCTACTGTAGAAGGAAGAAGAGTGGAGGTAAAGTCTAGAACCTGCCCTGTGGGAAATCCTAGCTTCACCAGCTTGCTGAATCAGGTCACTTCTATAAAGCTTGACAAAGGGAATTTTTTGCTATGGCAAAACATAATTCTCCCCATTTTGAAGAGTTACAAGCTTGAAGGTTACTTGACAGGAAAAACACCTCCTTCAGAAATGTCCATCATCATTCTTCCTTCTGAGGATGAACCTGAAGGTCTGCTACTCCCTAACCCCGAATATGATATCTGGCTGGCTGCTGATCAGCTTTTAGTTGGTTGA

mRNA sequence

ATGGCCAATGATTCTCAAATCAACGTTCTTCAAGCAAATATTAATCCTACTGTAGAAGGAAGAAGAGTGGAGGTAAAGTCTAGAACCTGCCCTGTGGGAAATCCTAGCTTCACCAGCTTGCTGAATCAGGTCACTTCTATAAAGCTTGACAAAGGGAATTTTTTGCTATGGCAAAACATAATTCTCCCCATTTTGAAGAGTTACAAGCTTGAAGGTTACTTGACAGGAAAAACACCTCCTTCAGAAATGTCCATCATCATTCTTCCTTCTGAGGATGAACCTGAAGGTCTGCTACTCCCTAACCCCGAATATGATATCTGGCTGGCTGCTGATCAGCTTTTAGTTGGTTGA

Coding sequence (CDS)

ATGGCCAATGATTCTCAAATCAACGTTCTTCAAGCAAATATTAATCCTACTGTAGAAGGAAGAAGAGTGGAGGTAAAGTCTAGAACCTGCCCTGTGGGAAATCCTAGCTTCACCAGCTTGCTGAATCAGGTCACTTCTATAAAGCTTGACAAAGGGAATTTTTTGCTATGGCAAAACATAATTCTCCCCATTTTGAAGAGTTACAAGCTTGAAGGTTACTTGACAGGAAAAACACCTCCTTCAGAAATGTCCATCATCATTCTTCCTTCTGAGGATGAACCTGAAGGTCTGCTACTCCCTAACCCCGAATATGATATCTGGCTGGCTGCTGATCAGCTTTTAGTTGGTTGA

Protein sequence

MANDSQINVLQANINPTVEGRRVEVKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTPPSEMSIIILPSEDEPEGLLLPNPEYDIWLAADQLLVG

Homology

[Close]

BLAST of Sgr018827.1 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 34  NPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTPPSEMSIIILPSEDE 93
           +P    LLNQ+TSIK+D+GNFLLWQN+ LPIL+SYKL  YLTG  P     ++   +   
Sbjct: 24  SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTN 83

Query: 94  PEGLLLP------NPEYDIWLAADQLLVG 117
            EG          NP Y+ W+  D+LL+G
Sbjct: 84  IEGSTSSQSSPTLNPTYEAWIVVDKLLLG 112

[Close]

BLAST of Sgr018827.1 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLT--GKTPPSE 84
           + S T    NP    +LNQ+ S+KLD+GN+LLWQ + LPILKSYKL+G+LT   + PP  
Sbjct: 8   IGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPPKF 67

Query: 85  MSIIILPSEDEPEGLLLPNPEYDIWLAADQLLVG 117
           +      +          NP++D W+  D LL+G
Sbjct: 68  IINPTCGASSRSTTTKTVNPKFDQWVTFDLLLLG 101

[Close]

BLAST of Sgr018827.1 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+S T    NP    LLNQ++S+KLD+ N+LLW+ + LPI+KSYK EGYLTG+   PP  
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++     S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLG 115

[Close]

BLAST of Sgr018827.1 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]

BLAST of Sgr018827.1 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]

BLAST of Sgr018827.1 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.1e-13
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 34  NPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTPPSEMSIIILPSEDE 93
           +P    LLNQ+TSIK+D+GNFLLWQN+ LPIL+SYKL  YLTG  P     ++   +   
Sbjct: 24  SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTN 83

Query: 94  PEGLLLP------NPEYDIWLAADQLLVG 117
            EG          NP Y+ W+  D+LL+G
Sbjct: 84  IEGSTSSQSSPTLNPTYEAWIVVDKLLLG 112

[Close]

BLAST of Sgr018827.1 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+S T    NP    LLNQ++S+KLD+ N+LLW+ + LPI+KSYK EGYLTG+   PP  
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++     S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLG 115

[Close]

BLAST of Sgr018827.1 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]

BLAST of Sgr018827.1 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]

BLAST of Sgr018827.1 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.4e-11
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 34  NPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTP--PSEMSIIILPSE 93
           NP    +LNQ+T+IKLD+GN+LLW+ + LPILKSYKL  +L G++P  P  + +   P+E
Sbjct: 19  NPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQPNE 78

Query: 94  D------EPE--------GLLLPNPEYDIWLAADQLLVG 117
                  EP          ++  NP+Y+ W+  D LL+G
Sbjct: 79  SIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLG 117

The following BLAST results are available for this feature:

BLAST of Sgr018827.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	1.3e-12	46.07	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_031745012.1	5.3e-11	41.49	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
XP_016901223.1	5.3e-11	39.81	PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]	[more]
KAA0060627.1	9.0e-11	39.81	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	9.0e-11	39.81	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]

BLAST of Sgr018827.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr018827.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	6.1e-13	46.07	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S4DZ26	2.5e-11	39.81	uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=...	[more]
A0A5D3BVJ1	4.3e-11	39.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V1E0	4.3e-11	39.81	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A5A7VPY0	7.4e-11	40.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sgr018827.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr018827	Sgr018827	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr018827.1.exon1	Sgr018827.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr018827.1	cds.Sgr018827.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr018827.1	Sgr018827.1-protein	polypeptide