Sgr018827 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr018827
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Locationtig00153210: 1049426 .. 1049776 (-)
RNA-Seq ExpressionSgr018827
SyntenySgr018827
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAATGATTCTCAAATCAACGTTCTTCAAGCAAATATTAATCCTACTGTAGAAGGAAGAAGAGTGGAGGTAAAGTCTAGAACCTGCCCTGTGGGAAATCCTAGCTTCACCAGCTTGCTGAATCAGGTCACTTCTATAAAGCTTGACAAAGGGAATTTTTTGCTATGGCAAAACATAATTCTCCCCATTTTGAAGAGTTACAAGCTTGAAGGTTACTTGACAGGAAAAACACCTCCTTCAGAAATGTCCATCATCATTCTTCCTTCTGAGGATGAACCTGAAGGTCTGCTACTCCCTAACCCCGAATATGATATCTGGCTGGCTGCTGATCAGCTTTTAGTTGGTTGA

mRNA sequence

ATGGCCAATGATTCTCAAATCAACGTTCTTCAAGCAAATATTAATCCTACTGTAGAAGGAAGAAGAGTGGAGGTAAAGTCTAGAACCTGCCCTGTGGGAAATCCTAGCTTCACCAGCTTGCTGAATCAGGTCACTTCTATAAAGCTTGACAAAGGGAATTTTTTGCTATGGCAAAACATAATTCTCCCCATTTTGAAGAGTTACAAGCTTGAAGGTTACTTGACAGGAAAAACACCTCCTTCAGAAATGTCCATCATCATTCTTCCTTCTGAGGATGAACCTGAAGGTCTGCTACTCCCTAACCCCGAATATGATATCTGGCTGGCTGCTGATCAGCTTTTAGTTGGTTGA

Coding sequence (CDS)

ATGGCCAATGATTCTCAAATCAACGTTCTTCAAGCAAATATTAATCCTACTGTAGAAGGAAGAAGAGTGGAGGTAAAGTCTAGAACCTGCCCTGTGGGAAATCCTAGCTTCACCAGCTTGCTGAATCAGGTCACTTCTATAAAGCTTGACAAAGGGAATTTTTTGCTATGGCAAAACATAATTCTCCCCATTTTGAAGAGTTACAAGCTTGAAGGTTACTTGACAGGAAAAACACCTCCTTCAGAAATGTCCATCATCATTCTTCCTTCTGAGGATGAACCTGAAGGTCTGCTACTCCCTAACCCCGAATATGATATCTGGCTGGCTGCTGATCAGCTTTTAGTTGGTTGA

Protein sequence

MANDSQINVLQANINPTVEGRRVEVKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTPPSEMSIIILPSEDEPEGLLLPNPEYDIWLAADQLLVG
Homology
[Close]
BLAST of Sgr018827 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 34  NPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTPPSEMSIIILPSEDE 93
           +P    LLNQ+TSIK+D+GNFLLWQN+ LPIL+SYKL  YLTG  P     ++   +   
Sbjct: 24  SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTN 83

Query: 94  PEGLLLP------NPEYDIWLAADQLLVG 117
            EG          NP Y+ W+  D+LL+G
Sbjct: 84  IEGSTSSQSSPTLNPTYEAWIVVDKLLLG 112

[Close]
BLAST of Sgr018827 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 0 

Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLT--GKTPPSE 84
           + S T    NP    +LNQ+ S+KLD+GN+LLWQ + LPILKSYKL+G+LT   + PP  
Sbjct: 8   IGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPPKF 67

Query: 85  MSIIILPSEDEPEGLLLPNPEYDIWLAADQLLVG 117
           +      +          NP++D W+  D LL+G
Sbjct: 68  IINPTCGASSRSTTTKTVNPKFDQWVTFDLLLLG 101

[Close]
BLAST of Sgr018827 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 0 

Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+S T    NP    LLNQ++S+KLD+ N+LLW+ + LPI+KSYK EGYLTG+   PP  
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++     S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLG 115

[Close]
BLAST of Sgr018827 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]
BLAST of Sgr018827 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]
BLAST of Sgr018827 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.1e-13
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 34  NPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTPPSEMSIIILPSEDE 93
           +P    LLNQ+TSIK+D+GNFLLWQN+ LPIL+SYKL  YLTG  P     ++   +   
Sbjct: 24  SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTN 83

Query: 94  PEGLLLP------NPEYDIWLAADQLLVG 117
            EG          NP Y+ W+  D+LL+G
Sbjct: 84  IEGSTSSQSSPTLNPTYEAWIVVDKLLLG 112

[Close]
BLAST of Sgr018827 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 0 

Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+S T    NP    LLNQ++S+KLD+ N+LLW+ + LPI+KSYK EGYLTG+   PP  
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++     S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQTAESQSEIDGTAEATDGASSRSIATKTVNPKFDQWLTSYLLLLG 115

[Close]
BLAST of Sgr018827 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]
BLAST of Sgr018827 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 25  VKSRTCPVGNPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKT--PPSE 84
           V+  T    NP    LLNQ++S+KLD+GN+LLW+ + LPI+KSYK EG+LTG+   PP  
Sbjct: 8   VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKF 67

Query: 85  MSIIILPSEDEPEGLL--------------LPNPEYDIWLAADQLLVG 117
           ++  I  S+ E +G                  NP++D WL +  LL+G
Sbjct: 68  ITNQIGESQSEIDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLG 115

[Close]
BLAST of Sgr018827 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.4e-11
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 0 

Query: 34  NPSFTSLLNQVTSIKLDKGNFLLWQNIILPILKSYKLEGYLTGKTP--PSEMSIIILPSE 93
           NP    +LNQ+T+IKLD+GN+LLW+ + LPILKSYKL  +L G++P  P  + +   P+E
Sbjct: 19  NPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQPNE 78

Query: 94  D------EPE--------GLLLPNPEYDIWLAADQLLVG 117
                  EP          ++  NP+Y+ W+  D LL+G
Sbjct: 79  SIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLG 117

The following BLAST results are available for this feature:
BLAST of Sgr018827 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151683.11.3e-1246.07uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_031745012.15.3e-1141.49uncharacterized protein LOC116405217 [Cucumis sativus][more]
XP_016901223.15.3e-1139.81PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo][more]
KAA0060627.19.0e-1139.81Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa][more]
TYK02246.19.0e-1139.81uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa][more]
BLAST of Sgr018827 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sgr018827 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DCW46.1e-1346.07uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A1S4DZ262.5e-1139.81uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=... [more]
A0A5D3BVJ14.3e-1139.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1E04.3e-1139.81Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ... [more]
A0A5A7VPY07.4e-1140.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Sgr018827 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr018827.1Sgr018827.1mRNA