Sed0028126.1 (mRNA) Chayote v1

Overview


Name	Sed0028126.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 2027620 .. 2028992 (-)
Sequence length	1373
RNA-Seq Expression	Sed0028126.1
Synteny	Sed0028126.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAATCCAACACGAAGGCGGTTGCACAAAAATAAACTGAGACAGGTAGCAGAGAAACAAAACGAAGGAAAACCCGAAGCCGAGGAGTTTAAGACTTTGGGGACTTTCAAAAATTAAGAACAGAGATTCAAAAAAAGCAACCCAAATTTGACCATTTAAATCCCAAGAAATTCCCAAGTTTCGCTTTCGAGTTACGCGATTGGTGAAATCCTCTTCGATTTATCCAATCTCGTTTCCGCCATTGTCGCACAATCGTCGTCTTCTGATCAATTCCTCTGTTTCTGTATTTTCGCCTCTCTGTTTTGCAGTTCGCGATCTTCAATGGCGTCCTTAGGAATTGGATGTGGAGGAAACTGCGGCGTATTGGATCGTCGATACGACGGCTGCGATCAGAAACCAGGTCCTCGATCTGCGGCGGTTTCCACCGCCAGATTCAAGAAACCGACGAGTCATATATCGTCGGTGAAGAGCTTGCAAGCGGTGGATCGCAGTAGGAAGGAGAGAAAAAACAGAAGCGAAGTGATTTCGCGAGATAAGCTCGACGAATGGATGAAGGAATCGGTGGTGGATATTGTGAAGAATCTTCGAGAAGCGCCTCTGTTTTTGCGGTTTTACACGGCGGAGGACGGCGAGGCGGCGAGATTCGAGACGGAGAAGGCGGTGGAGGAAGATCGGTGGCCGATCCTGGAGAAGCAGTGGAAGAGCGGAGCGGCGCCGACTCCGGAAGGCATTATATTCGTCCAAGAGCTTGAAGACGAGGATGAAGGCAGAACCGGCGGCGGCGCCGAATCGAAGGCTTGGGGGATTGTTGTGCAAGGAAAATGCGTTGAACGTGATGCGCCGGTTTGTTACTTGTTGAAGACGAGTAGTACGTTGGGGCTAGGGCTTTGGTGCACGCATTTCTGTTTGGTGAGGGTTAACAATTTTAGAGAGACCACCAAATCGCAGCTGGAGAATTGCTGGTTGCTGCAGAATCACTAAGATTTGTAAATGGCGATTGAATTGTGCGGTAATTTACACCCGTAATTTCGAATCGATTCTCTACGTTCATTATATTATACACTCGTGAAGTAATGGTTCATATCTTTTTTTTTTAAATATAATTTCATGAGTTTATTTATTTTGGATGAAAAAAGTTCCTCAAAACTTATCGTAAAGAGATATATTTTGATGGGTCTTGCTTGGCATAACTTCAACTTAACTAACATGTGACACATTCTTAATTATGCCTTTATGCTTAAGCCAACTAAGATTCTTGTTCCCCAATTTATCTTTTTCTTAGTTTTTCTTTCTGTTTGATCAAATCTTTTTCTTAGTTAACAATATTATTGGGTGGTTTTCGATGTCTAGGTCAGTTCACGACAGATTCGCC

mRNA sequence

TAGAAATCCAACACGAAGGCGGTTGCACAAAAATAAACTGAGACAGGTAGCAGAGAAACAAAACGAAGGAAAACCCGAAGCCGAGGAGTTTAAGACTTTGGGGACTTTCAAAAATTAAGAACAGAGATTCAAAAAAAGCAACCCAAATTTGACCATTTAAATCCCAAGAAATTCCCAAGTTTCGCTTTCGAGTTACGCGATTGGTGAAATCCTCTTCGATTTATCCAATCTCGTTTCCGCCATTGTCGCACAATCGTCGTCTTCTGATCAATTCCTCTGTTTCTGTATTTTCGCCTCTCTGTTTTGCAGTTCGCGATCTTCAATGGCGTCCTTAGGAATTGGATGTGGAGGAAACTGCGGCGTATTGGATCGTCGATACGACGGCTGCGATCAGAAACCAGGTCCTCGATCTGCGGCGGTTTCCACCGCCAGATTCAAGAAACCGACGAGTCATATATCGTCGGTGAAGAGCTTGCAAGCGGTGGATCGCAGTAGGAAGGAGAGAAAAAACAGAAGCGAAGTGATTTCGCGAGATAAGCTCGACGAATGGATGAAGGAATCGGTGGTGGATATTGTGAAGAATCTTCGAGAAGCGCCTCTGTTTTTGCGGTTTTACACGGCGGAGGACGGCGAGGCGGCGAGATTCGAGACGGAGAAGGCGGTGGAGGAAGATCGGTGGCCGATCCTGGAGAAGCAGTGGAAGAGCGGAGCGGCGCCGACTCCGGAAGGCATTATATTCGTCCAAGAGCTTGAAGACGAGGATGAAGGCAGAACCGGCGGCGGCGCCGAATCGAAGGCTTGGGGGATTGTTGTGCAAGGAAAATGCGTTGAACGTGATGCGCCGGTTTGTTACTTGTTGAAGACGAGTAGTACGTTGGGGCTAGGGCTTTGGTGCACGCATTTCTGTTTGGTGAGGGTTAACAATTTTAGAGAGACCACCAAATCGCAGCTGGAGAATTGCTGGTTGCTGCAGAATCACTAAGATTTGTAAATGGCGATTGAATTGTGCGGTAATTTACACCCGTAATTTCGAATCGATTCTCTACGTTCATTATATTATACACTCGTGAAGTAATGGTTCATATCTTTTTTTTTTAAATATAATTTCATGAGTTTATTTATTTTGGATGAAAAAAGTTCCTCAAAACTTATCGTAAAGAGATATATTTTGATGGGTCTTGCTTGGCATAACTTCAACTTAACTAACATGTGACACATTCTTAATTATGCCTTTATGCTTAAGCCAACTAAGATTCTTGTTCCCCAATTTATCTTTTTCTTAGTTTTTCTTTCTGTTTGATCAAATCTTTTTCTTAGTTAACAATATTATTGGGTGGTTTTCGATGTCTAGGTCAGTTCACGACAGATTCGCC

Coding sequence (CDS)

ATGGCGTCCTTAGGAATTGGATGTGGAGGAAACTGCGGCGTATTGGATCGTCGATACGACGGCTGCGATCAGAAACCAGGTCCTCGATCTGCGGCGGTTTCCACCGCCAGATTCAAGAAACCGACGAGTCATATATCGTCGGTGAAGAGCTTGCAAGCGGTGGATCGCAGTAGGAAGGAGAGAAAAAACAGAAGCGAAGTGATTTCGCGAGATAAGCTCGACGAATGGATGAAGGAATCGGTGGTGGATATTGTGAAGAATCTTCGAGAAGCGCCTCTGTTTTTGCGGTTTTACACGGCGGAGGACGGCGAGGCGGCGAGATTCGAGACGGAGAAGGCGGTGGAGGAAGATCGGTGGCCGATCCTGGAGAAGCAGTGGAAGAGCGGAGCGGCGCCGACTCCGGAAGGCATTATATTCGTCCAAGAGCTTGAAGACGAGGATGAAGGCAGAACCGGCGGCGGCGCCGAATCGAAGGCTTGGGGGATTGTTGTGCAAGGAAAATGCGTTGAACGTGATGCGCCGGTTTGTTACTTGTTGAAGACGAGTAGTACGTTGGGGCTAGGGCTTTGGTGCACGCATTTCTGTTTGGTGAGGGTTAACAATTTTAGAGAGACCACCAAATCGCAGCTGGAGAATTGCTGGTTGCTGCAGAATCACTAA

Protein sequence

MASLGIGCGGNCGVLDRRYDGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDRSRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEKAVEEDRWPILEKQWKSGAAPTPEGIIFVQELEDEDEGRTGGGAESKAWGIVVQGKCVERDAPVCYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQNH

Homology

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BLAST of Sed0028126.1 vs. NCBI nr
Match: XP_022993514.1 (uncharacterized protein LOC111489497 [Cucurbita maxima])

HSP 1 Score: 338.2 bits (866), Expect = 5.3e-89
Identity = 171/223 (76.68%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDR 60
           MASLGI CGGNCGVLDRRY    DGCDQK GPRS AVST   +K +S +S++KSLQ+V+R
Sbjct: 1   MASLGIRCGGNCGVLDRRYVNVHDGCDQKAGPRSLAVSTGGLRKSSSSVSTMKSLQSVNR 60

Query: 61  SRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTA-EDGEAARFETEKAVE 120
             K+R + +EVISRDK DEWMKESVV+IVKNLREAPLFLR YT  EDGEAARFETEKAVE
Sbjct: 61  HVKDRTDSNEVISRDKFDEWMKESVVNIVKNLREAPLFLRVYTTDEDGEAARFETEKAVE 120

Query: 121 EDRWPILEKQWKSGAAPTPEGIIFVQELEDEDEGRTGGGAESKAWGIVVQGKCVERDAPV 180
           EDRWPILEKQWKSGAAPTPEGI+FV+ELEDED        ESKAWGIV+QG+ VER APV
Sbjct: 121 EDRWPILEKQWKSGAAPTPEGIMFVEELEDEDY----EDGESKAWGIVIQGRGVERGAPV 180

Query: 181 CYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           CYLLKTS   GLG+WCTHFCLVRV NFRETTKSQL+NCWL+QN
Sbjct: 181 CYLLKTSRAAGLGMWCTHFCLVRVKNFRETTKSQLQNCWLVQN 219

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BLAST of Sed0028126.1 vs. NCBI nr
Match: XP_022938776.1 (uncharacterized protein LOC111444891 [Cucurbita moschata])

HSP 1 Score: 334.7 bits (857), Expect = 5.9e-88
Identity = 170/223 (76.23%), Postives = 186/223 (83.41%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDR 60
           MASLGI CGGNCGVLDRRY    DGCDQK GPRS AVST   +K +S +S +KSLQ V+R
Sbjct: 1   MASLGIRCGGNCGVLDRRYVNVHDGCDQKAGPRSLAVSTGGLRKSSSSVSILKSLQPVNR 60

Query: 61  SRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTA-EDGEAARFETEKAVE 120
             KER + +EVISRDK DEWMKESVV+IVKNLREAPLFLR YT  EDGEAARFETEKAVE
Sbjct: 61  HVKERTDSNEVISRDKFDEWMKESVVNIVKNLREAPLFLRVYTTDEDGEAARFETEKAVE 120

Query: 121 EDRWPILEKQWKSGAAPTPEGIIFVQELEDEDEGRTGGGAESKAWGIVVQGKCVERDAPV 180
           EDRWPILEKQWKSG+ PTPEGI+FV+ELEDED        ESKAWGIV+QG+ VER APV
Sbjct: 121 EDRWPILEKQWKSGSTPTPEGIMFVEELEDEDY----EDGESKAWGIVIQGRGVERGAPV 180

Query: 181 CYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           CYLLKTS   GLG+WCTHFCLVRV NFRETTKSQL+NCWL+QN
Sbjct: 181 CYLLKTSRAAGLGMWCTHFCLVRVKNFRETTKSQLQNCWLVQN 219

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BLAST of Sed0028126.1 vs. NCBI nr
Match: XP_023549554.1 (uncharacterized protein LOC111808023 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.4 bits (851), Expect = 2.9e-87
Identity = 170/223 (76.23%), Postives = 186/223 (83.41%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDR 60
           MASLGI CGGNCGVLDRRY    DGCDQK  PRS AVST   +K +S +S++KSLQ V R
Sbjct: 1   MASLGIRCGGNCGVLDRRYVNVHDGCDQKACPRSLAVSTGGLRKSSSSVSTMKSLQPVIR 60

Query: 61  SRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTA-EDGEAARFETEKAVE 120
             KER + +EVISRDK DEWMKESVV+IVKNLREAPLFLR YT  EDGEAARFETEKAVE
Sbjct: 61  HVKERTDSNEVISRDKFDEWMKESVVNIVKNLREAPLFLRVYTTDEDGEAARFETEKAVE 120

Query: 121 EDRWPILEKQWKSGAAPTPEGIIFVQELEDEDEGRTGGGAESKAWGIVVQGKCVERDAPV 180
           EDRWPILEKQWKSG+APTPEGI+FV+ELEDED        ESKAWGIV+QG+ VER APV
Sbjct: 121 EDRWPILEKQWKSGSAPTPEGIMFVEELEDEDY----EDGESKAWGIVIQGRGVERGAPV 180

Query: 181 CYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           CYLLKTS   GLG+WCTHFCLVRV NFRETTKSQL+NCWL+QN
Sbjct: 181 CYLLKTSRAAGLGMWCTHFCLVRVKNFRETTKSQLQNCWLVQN 219

[Close]

BLAST of Sed0028126.1 vs. NCBI nr
Match: XP_022133523.1 (uncharacterized protein LOC111006084 [Momordica charantia])

HSP 1 Score: 325.1 bits (832), Expect = 4.7e-85
Identity = 172/235 (73.19%), Postives = 187/235 (79.57%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DG-CDQKPGPRSAAVST---ARFKKPTSHISSVKSLQ 60
           MASLGI CGGNCGVLDR Y    DG CDQK GPRS  V T   AR+++    +S++ SLQ
Sbjct: 1   MASLGIRCGGNCGVLDRPYVNVHDGCCDQKAGPRSLVVPTGSGARWRRSRRFVSAMTSLQ 60

Query: 61  AVDRSRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEK 120
            V+R    R N +EVISRDKLDEWMKESVVDIVKNLREAPLFLRFYT EDGEAARFETEK
Sbjct: 61  PVNR----RGNGNEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTTEDGEAARFETEK 120

Query: 121 AVEEDRWPILEKQWKSGAAPTPEGIIFVQELEDE--DEGRTGGG-------AESKAWGIV 180
           AVEE RWP+LE+QWK+GAAP PEGI+FVQELED+  DE   GGG        ESKAWGIV
Sbjct: 121 AVEEKRWPVLEEQWKNGAAPMPEGILFVQELEDDDYDEDADGGGGNGSNIAGESKAWGIV 180

Query: 181 VQGKCVERDAPVCYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           +QG+ VER  PVCYLLKTSS  GLGLWCTHFCLVRV NFRETTKSQLENCWLLQN
Sbjct: 181 IQGRGVERGGPVCYLLKTSSAAGLGLWCTHFCLVRVKNFRETTKSQLENCWLLQN 231

[Close]

BLAST of Sed0028126.1 vs. NCBI nr
Match: XP_038884231.1 (uncharacterized protein LOC120075128 [Benincasa hispida])

HSP 1 Score: 321.6 bits (823), Expect = 5.2e-84
Identity = 164/219 (74.89%), Postives = 180/219 (82.19%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRYDGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDRSRKE 60
           MASLGI CGGNCG+L+  +DGCDQKP PRS  +ST R KK  S++S++KSLQ V+R    
Sbjct: 1   MASLGIQCGGNCGILN-LHDGCDQKPVPRSLLISTTRLKKSRSYVSAMKSLQPVNR---R 60

Query: 61  RKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEKAVEEDRWP 120
           +    EVIS DKLDEWMKESVVDIVKNLREAPLFLRFYT +    ARFETEKAVEEDRWP
Sbjct: 61  KDGNGEVISPDKLDEWMKESVVDIVKNLREAPLFLRFYTPDGKTTARFETEKAVEEDRWP 120

Query: 121 ILEKQWKSGAAPTPEGIIFVQELED-EDEGRTGGGAESKAWGIVVQGKCVERDAPVCYLL 180
           ILEKQWK+GA PTPEGIIFVQ+LED +DEG   G  ESKAWGIVVQG+ VER APVCYLL
Sbjct: 121 ILEKQWKNGAEPTPEGIIFVQKLEDGDDEGEIDG--ESKAWGIVVQGRGVERGAPVCYLL 180

Query: 181 KTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           KT  T GLGLWCTHFCLVRV NFRETTKSQL+NCWL QN
Sbjct: 181 KTCRTAGLGLWCTHFCLVRVKNFRETTKSQLQNCWLTQN 213

[Close]

BLAST of Sed0028126.1 vs. ExPASy TrEMBL
Match: A0A6J1K0D9 (uncharacterized protein LOC111489497 OS=Cucurbita maxima OX=3661 GN=LOC111489497 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.6e-89
Identity = 171/223 (76.68%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDR 60
           MASLGI CGGNCGVLDRRY    DGCDQK GPRS AVST   +K +S +S++KSLQ+V+R
Sbjct: 1   MASLGIRCGGNCGVLDRRYVNVHDGCDQKAGPRSLAVSTGGLRKSSSSVSTMKSLQSVNR 60

Query: 61  SRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTA-EDGEAARFETEKAVE 120
             K+R + +EVISRDK DEWMKESVV+IVKNLREAPLFLR YT  EDGEAARFETEKAVE
Sbjct: 61  HVKDRTDSNEVISRDKFDEWMKESVVNIVKNLREAPLFLRVYTTDEDGEAARFETEKAVE 120

Query: 121 EDRWPILEKQWKSGAAPTPEGIIFVQELEDEDEGRTGGGAESKAWGIVVQGKCVERDAPV 180
           EDRWPILEKQWKSGAAPTPEGI+FV+ELEDED        ESKAWGIV+QG+ VER APV
Sbjct: 121 EDRWPILEKQWKSGAAPTPEGIMFVEELEDEDY----EDGESKAWGIVIQGRGVERGAPV 180

Query: 181 CYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           CYLLKTS   GLG+WCTHFCLVRV NFRETTKSQL+NCWL+QN
Sbjct: 181 CYLLKTSRAAGLGMWCTHFCLVRVKNFRETTKSQLQNCWLVQN 219

[Close]

BLAST of Sed0028126.1 vs. ExPASy TrEMBL
Match: A0A6J1FE33 (uncharacterized protein LOC111444891 OS=Cucurbita moschata OX=3662 GN=LOC111444891 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.9e-88
Identity = 170/223 (76.23%), Postives = 186/223 (83.41%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDR 60
           MASLGI CGGNCGVLDRRY    DGCDQK GPRS AVST   +K +S +S +KSLQ V+R
Sbjct: 1   MASLGIRCGGNCGVLDRRYVNVHDGCDQKAGPRSLAVSTGGLRKSSSSVSILKSLQPVNR 60

Query: 61  SRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTA-EDGEAARFETEKAVE 120
             KER + +EVISRDK DEWMKESVV+IVKNLREAPLFLR YT  EDGEAARFETEKAVE
Sbjct: 61  HVKERTDSNEVISRDKFDEWMKESVVNIVKNLREAPLFLRVYTTDEDGEAARFETEKAVE 120

Query: 121 EDRWPILEKQWKSGAAPTPEGIIFVQELEDEDEGRTGGGAESKAWGIVVQGKCVERDAPV 180
           EDRWPILEKQWKSG+ PTPEGI+FV+ELEDED        ESKAWGIV+QG+ VER APV
Sbjct: 121 EDRWPILEKQWKSGSTPTPEGIMFVEELEDEDY----EDGESKAWGIVIQGRGVERGAPV 180

Query: 181 CYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           CYLLKTS   GLG+WCTHFCLVRV NFRETTKSQL+NCWL+QN
Sbjct: 181 CYLLKTSRAAGLGMWCTHFCLVRVKNFRETTKSQLQNCWLVQN 219

[Close]

BLAST of Sed0028126.1 vs. ExPASy TrEMBL
Match: A0A6J1BZC8 (uncharacterized protein LOC111006084 OS=Momordica charantia OX=3673 GN=LOC111006084 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.3e-85
Identity = 172/235 (73.19%), Postives = 187/235 (79.57%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DG-CDQKPGPRSAAVST---ARFKKPTSHISSVKSLQ 60
           MASLGI CGGNCGVLDR Y    DG CDQK GPRS  V T   AR+++    +S++ SLQ
Sbjct: 1   MASLGIRCGGNCGVLDRPYVNVHDGCCDQKAGPRSLVVPTGSGARWRRSRRFVSAMTSLQ 60

Query: 61  AVDRSRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEK 120
            V+R    R N +EVISRDKLDEWMKESVVDIVKNLREAPLFLRFYT EDGEAARFETEK
Sbjct: 61  PVNR----RGNGNEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTTEDGEAARFETEK 120

Query: 121 AVEEDRWPILEKQWKSGAAPTPEGIIFVQELEDE--DEGRTGGG-------AESKAWGIV 180
           AVEE RWP+LE+QWK+GAAP PEGI+FVQELED+  DE   GGG        ESKAWGIV
Sbjct: 121 AVEEKRWPVLEEQWKNGAAPMPEGILFVQELEDDDYDEDADGGGGNGSNIAGESKAWGIV 180

Query: 181 VQGKCVERDAPVCYLLKTSSTLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           +QG+ VER  PVCYLLKTSS  GLGLWCTHFCLVRV NFRETTKSQLENCWLLQN
Sbjct: 181 IQGRGVERGGPVCYLLKTSSAAGLGLWCTHFCLVRVKNFRETTKSQLENCWLLQN 231

[Close]

BLAST of Sed0028126.1 vs. ExPASy TrEMBL
Match: A0A6J1HGI4 (uncharacterized protein LOC111463354 OS=Cucurbita moschata OX=3662 GN=LOC111463354 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 9.2e-79
Identity = 160/226 (70.80%), Postives = 175/226 (77.43%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDR 60
           MASL I CG N   LD  Y    DGCDQK  PRS      RF+K  +HISS+KSLQ V  
Sbjct: 1   MASLAIRCGRNFSALDHPYANVPDGCDQKASPRSLVAFPGRFRKSRTHISSMKSLQPVKG 60

Query: 61  SRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEKAVEE 120
             K RK  +E ISRDKLD+WMKESVV+IVKNLREAPLFLR+YT EDG+ AR ETEKAVEE
Sbjct: 61  HVKGRKKGNEAISRDKLDKWMKESVVEIVKNLREAPLFLRWYTTEDGKGARLETEKAVEE 120

Query: 121 DRWPILEKQWKSGAAPTPEGIIFVQELEDED-EGRTGGGAESKAWGIVVQGKCVERDAPV 180
           DRW  LE+QWK+G A TPEGIIFVQELE+ED EG      ESKAWGIVVQG+CVER APV
Sbjct: 121 DRWRTLEEQWKNGEARTPEGIIFVQELEEEDYEG------ESKAWGIVVQGRCVERGAPV 180

Query: 181 CYLLKTSSTL---GLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           CYLLKTSS+    G+GLWCTHFCLVRV NFRETTKSQL+NCWLLQN
Sbjct: 181 CYLLKTSSSRGGGGVGLWCTHFCLVRVKNFRETTKSQLKNCWLLQN 220

[Close]

BLAST of Sed0028126.1 vs. ExPASy TrEMBL
Match: A0A6J1JNW7 (uncharacterized protein LOC111487559 OS=Cucurbita maxima OX=3661 GN=LOC111487559 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.5e-78
Identity = 159/224 (70.98%), Postives = 173/224 (77.23%), Query Frame = 0


Query: 1   MASLGIGCGGNCGVLDRRY----DGCDQKPGPRSAAVSTARFKKPTSHISSVKSLQAVDR 60
           M SL I CG N   LD  Y    DGCDQK  PRS      RF+K  +HISS+KSLQ V  
Sbjct: 1   MVSLAIQCGRNFSALDHGYANVPDGCDQKVSPRSLVAFPGRFRKSRTHISSMKSLQPVKG 60

Query: 61  SRKERKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEKAVEE 120
             K RK  +E IS DKLD+WMKESVV+IVKNLREAPLFLR+YT EDG+ AR ETEKAVEE
Sbjct: 61  HVKGRKKGNEAISSDKLDKWMKESVVEIVKNLREAPLFLRWYTTEDGKGARLETEKAVEE 120

Query: 121 DRWPILEKQWKSGAAPTPEGIIFVQELEDED-EGRTGGGAESKAWGIVVQGKCVERDAPV 180
           DRW  LE+QWK+G A TPEGIIFVQELEDED EG      ESKAWGIVVQG+CVER APV
Sbjct: 121 DRWRTLEEQWKNGEARTPEGIIFVQELEDEDYEG------ESKAWGIVVQGRCVERGAPV 180

Query: 181 CYLLKTSSTL-GLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           CYLLKTSS+  G+GLWCTHFCLVRV NFRETTKSQL+NCWLLQN
Sbjct: 181 CYLLKTSSSRGGVGLWCTHFCLVRVKNFRETTKSQLKNCWLLQN 218

[Close]

BLAST of Sed0028126.1 vs. TAIR 10
Match: AT5G05250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-35
Identity = 81/171 (47.37%), Postives = 110/171 (64.33%), Query Frame = 0


Query: 59  KERKNRSEV-ISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEKAVEED 118
           + R +R EV   R+KLD WMKESV +IVKNL EAPL +  YT +  E     T   ++ +
Sbjct: 74  RSRGDRWEVEAEREKLDRWMKESVTEIVKNLSEAPLLVHLYTGDKEEG----TVVVMKAE 133

Query: 119 RWPILEKQWKSGAAPTPEGIIFVQELEDEDEG---RTGGGAESKAWGIVVQGKCVERDAP 178
            W  ++ +W+ G A  PEGI+FV++L   +E       GG  ++AWG+VVQG+ VE   P
Sbjct: 134 EWAAVKGRWERGEAEMPEGIVFVEQLGAAEESCGCGFDGGDGTRAWGLVVQGRGVE-CGP 193

Query: 179 VCYLLKTS-------STLGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQN 219
           VCYLLKT+       S  GLG+ CTHFCL +V++FRET++SQL NCWL+ N
Sbjct: 194 VCYLLKTTRVGSGSGSGSGLGMRCTHFCLAKVSSFRETSESQLRNCWLVGN 239

[Close]

BLAST of Sed0028126.1 vs. TAIR 10
Match: AT3G56360.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-35
Identity = 77/164 (46.95%), Postives = 103/164 (62.80%), Query Frame = 0


Query: 61  RKNRSEVISRDKLDEWMKESVVDIVKNLREAPLFLRFYTAEDGEAARFETEKAVEEDRWP 120
           RK    V+SR+KLD W+++SVV+IVKNLRE+PL +  Y   +G      T    E+  W 
Sbjct: 70  RKRGGSVVSREKLDVWLRDSVVEIVKNLRESPLLMHLYAEANGGLTTTATNPKAED--WT 129

Query: 121 ILEKQWKSGAAPTPEGIIFVQELED----EDEGRTGG--GAESKAWGIVVQGKCVERDAP 180
            +E +W  G   TPEG+I V++L D    +D+   GG  G ++ AWGIV QG+  +   P
Sbjct: 130 EMEGKWGRGEERTPEGVILVEKLADGDIADDDDHDGGACGEDTSAWGIVAQGRGSD-TGP 189

Query: 181 VCYLLKTSST-LGLGLWCTHFCLVRVNNFRETTKSQLENCWLLQ 218
           VCYLLKT+    G+G  CTHFCLV+V +FRET  SQL N WL+Q
Sbjct: 190 VCYLLKTTRVRSGMGTVCTHFCLVKVKSFRETAMSQLNNSWLVQ 230

The following BLAST results are available for this feature:

BLAST of Sed0028126.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993514.1	5.3e-89	76.68	uncharacterized protein LOC111489497 [Cucurbita maxima]	[more]
XP_022938776.1	5.9e-88	76.23	uncharacterized protein LOC111444891 [Cucurbita moschata]	[more]
XP_023549554.1	2.9e-87	76.23	uncharacterized protein LOC111808023 [Cucurbita pepo subsp. pepo]	[more]
XP_022133523.1	4.7e-85	73.19	uncharacterized protein LOC111006084 [Momordica charantia]	[more]
XP_038884231.1	5.2e-84	74.89	uncharacterized protein LOC120075128 [Benincasa hispida]	[more]

BLAST of Sed0028126.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0028126.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0D9	2.6e-89	76.68	uncharacterized protein LOC111489497 OS=Cucurbita maxima OX=3661 GN=LOC111489497...	[more]
A0A6J1FE33	2.9e-88	76.23	uncharacterized protein LOC111444891 OS=Cucurbita moschata OX=3662 GN=LOC1114448...	[more]
A0A6J1BZC8	2.3e-85	73.19	uncharacterized protein LOC111006084 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1HGI4	9.2e-79	70.80	uncharacterized protein LOC111463354 OS=Cucurbita moschata OX=3662 GN=LOC1114633...	[more]
A0A6J1JNW7	3.5e-78	70.98	uncharacterized protein LOC111487559 OS=Cucurbita maxima OX=3661 GN=LOC111487559...	[more]

BLAST of Sed0028126.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05250.1	1.6e-35	47.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G56360.1	4.7e-35	46.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35127	FAMILY NOT NAMED	coord: 33..217

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0028126	Sed0028126	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0028126.1-exon	Sed0028126.1-exon-LG03:2027620..2028992	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0028126.1-three_prime_utr	Sed0028126.1-three_prime_utr-LG03:2027620..2028010	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0028126.1-cds	Sed0028126.1-cds-LG03:2028011..2028670	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0028126.1-five_prime_utr	Sed0028126.1-five_prime_utr-LG03:2028671..2028992	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0028126.1	Sed0028126.1-protein	polypeptide