Sed0027850.1 (mRNA) Chayote v1

Overview


Name	Sed0027850.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	ribosomal RNA small subunit methyltransferase NEP1
Location	LG06: 10652167 .. 10654902 (-)
Sequence length	1296
RNA-Seq Expression	Sed0027850.1
Synteny	Sed0027850.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCCATAACCCAAGCGCTGTGGTGGTTGCCGCTAGGTTTCAACGATAGTGTATATATCCAATTCAATTTCTAGGGTTTATGCTTGCCGCGATCTTTCGACGACAATCCAGAAGCATTAGCTTCACTCCTGTTCACAATGGGTCGACCTTTTGATGCGAAGGGGAAGAAGAGAAAGAATAGGGAGGTATACGACAGAGAATCGACCGCACCGGAGAAGAAGTCTTTGGGGGCGGAGGAGCCTGATGAAGAAGAACCACTGAATGGAGCAGCAAAAGAAGACTTCCACGAGCTTGGAAGTATTCCAATTGTTCCAAGTGACCCCAAAAGTGCTGGTGTCATCTTCGTTCTCGAGAGAGCTTCTCTGGAGGTCGCCAAAGTTAAGGGGGTACGTCTCTTCTAGATGTACAGTTTGTTTTTTTCGGGGCTAGATGGATGACAAATTTTGTATTTGAATTTCAGTGGGGGATAGCTGTTTACTTAACCTAGTTATTCATATTCCATTATCTGTTTATAGAATTATCAGCTGTTAAATTCCGATGACCACTCCAATTTCAGTGGAGGGATAGATGGATGAAAAATAATCGGATTTCAATGTTTCCTGCGTATAGAATTATGAGCTGTTAAATTCCGATGACCATTCCAAAATTATTCGGAGATACAACAGAAATCCTGGAGATTACAGACCAGATATCTGCCATCAAGTAAGTACTGCTATTTTGCATTTGGATAGAGATTTTCTAGGTAGAGGAGAGTGGGAGCTTTGTATGTATAAGTATCAGAAGTGGTGTTAATTTTAAAAATGAATTACCTTTAGGGAAAGGAGAAAGGGAGCTGGTATGTCTATATTTGTGTATAGAATTGATGTTAAATGTCATTCATTCAGGCTCTGTTGAATATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGCCGTTTATGTGAAAACTGAGAAAGGCTTATTGATTGAAATTAAACCATATGTTCGTCTGCCAAGGACGCAAAAGCGCTTTTATGGACTTATGTGTAAGTGTATTTTCTTGTTCTACTTTTGCTGAACATCTCTTTAGTTCTACTTGCTGGGCCCGTTTTGATACATGGAGATTTCAGATTGACCCTTTTCCAAATTCCAAATTCTTTGCAGTGGAATTGCTACAAAAGTTAAGCATCACAGCTGTTGGCCAGCGTGATAAACTTTTACGCCTGATCAAAAATCCTGTAACTCAATATTTACCTGCCAATTCTCGTAAGATGGGTAAGCTTAAACCCTACTCTATGTGAGTTTTGTGTTTAGGTAGGAACTTTGCATATTGTTTTCTTGCATTTCAGGCTTCTCACACAGTTCAAACAAGTTGGTCAAGATGCAGAATTATCTGGATGCGGTCAAAGATGATGTAGACCTTGTTTTTGTGGTACCTTTAAAACTCAGAACTGAAAATTCCACTTTTCTACGCTACATTTATATTGCATACGATCTACTTCCCTTTACTGCAATGTTTTAGGTAGGTGCTATGGCTCATGGGAAAATTGATATTGATTACGCAGATGATCTTTTATCCAGTAAGTTTGTTTTTCTGTGTTGTCTTTTTTATTAAAATAATATAAATTTTAAGTGTTCCTGTGCCTATCTTAACTTTTCTTTCATTTGAGGACATAGATGTTAGTTGTTTTAGCTCAGCGTAGCGTACTGATTCTGTTGTAGTATGTGATAGAAATCTCTATGGAGGAAATGGGTGGGATCAGATATTGGTGAGAAAAGCTAGCGTAGAGGTAGAGGGAAGTTTAGAGAGAAAGTGTGCAGAAGTATCAATGCTTCTTGTACTTCTTTGAACAGTGTTTCCGTGTTATTTTAGTACATTGATATGCTAATAGTTGAAGATTGTATTTTGTTTTTTGATGAAAGATATTTATATTTGCAATGTATTGATGACCCAAATCAACCCAACCCAACCCAAAAATATAAAAGTTGGGTTGGGTTGGAAAAGTGATCAATCCGGGTTAATTTCCTCAACCCAACCCAAACCCATGTACACCCTAGTTTTAACCCTTCAATTAAAGTAGCTTGGGTTAATATGTTTTATTTATTTGTTCAAAAGAATATAATATATGTTTAATTTATATGACTACCTATTTCATTTTTAACAAATCTAGTATGATTGGACCTTCGAGTTAAATTTAAGCAGAGGTGCATTGGTATATAAAAAGTTCTTTCAAACAATTATCTTTTCGGGCAGTATATACTTTTGAATGCATTAGCTAGCTGTGAAATCATATATTCTGCGAGTGACAATATTTCCTGTTATATTTTTGCAGTTTCTAATTATCCTCTCAGTGCTGGTTGCTGTATTGCTGACATTTGCAAAGTTTTGGCCGACAAATGGAATGTATGGTGAACCATGCTGACAACTCTATATCATATTAAGTTTCATATTCTTATTTCTTGTTTATGAAGTTGGGTAGTAGAGTTTAGAGGTGTTTTATTGTAGGGAACCATAACAGAAGAGATTCCATTATTTTCTAGTGATATATATAAATACATGAATATATGTATAAAATTTTTAATTCAACAACAATTGGGGTGATGAATTAGAACATGTAATTAAGTCATACATGATGCCGCCCCATTTGGGAACTGTAGTGGCAAGTTCAGTTCTATTTAGGTATTTTATGTGTGTAGCGAATGCTCAATGGATTAAAGTTTCAAATATATCATGAATTTTACTATATTTCAA

mRNA sequence

CAGCCCATAACCCAAGCGCTGTGGTGGTTGCCGCTAGGTTTCAACGATAGTGTATATATCCAATTCAATTTCTAGGGTTTATGCTTGCCGCGATCTTTCGACGACAATCCAGAAGCATTAGCTTCACTCCTGTTCACAATGGGTCGACCTTTTGATGCGAAGGGGAAGAAGAGAAAGAATAGGGAGGTATACGACAGAGAATCGACCGCACCGGAGAAGAAGTCTTTGGGGGCGGAGGAGCCTGATGAAGAAGAACCACTGAATGGAGCAGCAAAAGAAGACTTCCACGAGCTTGGAAGTATTCCAATTGTTCCAAGTGACCCCAAAAGTGCTGGTGTCATCTTCGTTCTCGAGAGAGCTTCTCTGGAGGTCGCCAAAGTTAAGGGGAATTATGAGCTGTTAAATTCCGATGACCATTCCAAAATTATTCGGAGATACAACAGAAATCCTGGAGATTACAGACCAGATATCTGCCATCAAGCTCTGTTGAATATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGCCGTTTATGTGAAAACTGAGAAAGGCTTATTGATTGAAATTAAACCATATGTTCGTCTGCCAAGGACGCAAAAGCGCTTTTATGGACTTATGTTGGAATTGCTACAAAAGTTAAGCATCACAGCTGTTGGCCAGCGTGATAAACTTTTACGCCTGATCAAAAATCCTGTAACTCAATATTTACCTGCCAATTCTCGTAAGATGGGCTTCTCACACAGTTCAAACAAGTTGGTCAAGATGCAGAATTATCTGGATGCGGTCAAAGATGATGTAGACCTTGTTTTTGTGGTAGGTGCTATGGCTCATGGGAAAATTGATATTGATTACGCAGATGATCTTTTATCCATTTCTAATTATCCTCTCAGTGCTGGTTGCTGTATTGCTGACATTTGCAAAGTTTTGGCCGACAAATGGAATGTATGGTGAACCATGCTGACAACTCTATATCATATTAAGTTTCATATTCTTATTTCTTGTTTATGAAGTTGGGTAGTAGAGTTTAGAGGTGTTTTATTGTAGGGAACCATAACAGAAGAGATTCCATTATTTTCTAGTGATATATATAAATACATGAATATATGTATAAAATTTTTAATTCAACAACAATTGGGGTGATGAATTAGAACATGTAATTAAGTCATACATGATGCCGCCCCATTTGGGAACTGTAGTGGCAAGTTCAGTTCTATTTAGGTATTTTATGTGTGTAGCGAATGCTCAATGGATTAAAGTTTCAAATATATCATGAATTTTACTATATTTCAA

Coding sequence (CDS)

ATGGGTCGACCTTTTGATGCGAAGGGGAAGAAGAGAAAGAATAGGGAGGTATACGACAGAGAATCGACCGCACCGGAGAAGAAGTCTTTGGGGGCGGAGGAGCCTGATGAAGAAGAACCACTGAATGGAGCAGCAAAAGAAGACTTCCACGAGCTTGGAAGTATTCCAATTGTTCCAAGTGACCCCAAAAGTGCTGGTGTCATCTTCGTTCTCGAGAGAGCTTCTCTGGAGGTCGCCAAAGTTAAGGGGAATTATGAGCTGTTAAATTCCGATGACCATTCCAAAATTATTCGGAGATACAACAGAAATCCTGGAGATTACAGACCAGATATCTGCCATCAAGCTCTGTTGAATATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGCCGTTTATGTGAAAACTGAGAAAGGCTTATTGATTGAAATTAAACCATATGTTCGTCTGCCAAGGACGCAAAAGCGCTTTTATGGACTTATGTTGGAATTGCTACAAAAGTTAAGCATCACAGCTGTTGGCCAGCGTGATAAACTTTTACGCCTGATCAAAAATCCTGTAACTCAATATTTACCTGCCAATTCTCGTAAGATGGGCTTCTCACACAGTTCAAACAAGTTGGTCAAGATGCAGAATTATCTGGATGCGGTCAAAGATGATGTAGACCTTGTTTTTGTGGTAGGTGCTATGGCTCATGGGAAAATTGATATTGATTACGCAGATGATCTTTTATCCATTTCTAATTATCCTCTCAGTGCTGGTTGCTGTATTGCTGACATTTGCAAAGTTTTGGCCGACAAATGGAATGTATGGTGA

Protein sequence

MGRPFDAKGKKRKNREVYDRESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSIPIVPSDPKSAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNVW

Homology

[Close]

BLAST of Sed0027850.1 vs. NCBI nr
Match: XP_038905075.1 (ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida])

HSP 1 Score: 417.2 bits (1071), Expect = 1.1e-112
Identity = 219/279 (78.49%), Postives = 235/279 (84.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     EST P KK     EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKSEKYDRDDDDGESTVPAKKPTAENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDP---KSAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DP   K AGVIFVLERASLEVAKV  NY+LLNSDDHS  +R+ NRNPGDYRPDI 
Sbjct: 61  PIVPKDPNSDKHAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRKNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLKAVYVKTEKGLLIE+KPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKAVYVKTEKGLLIEVKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPANSRKMGFSHSS+KLVKM+NYLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANSRKMGFSHSSDKLVKMRNYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWN+
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNI 274

[Close]

BLAST of Sed0027850.1 vs. NCBI nr
Match: XP_008443268.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KAA0053876.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa] >TYK25528.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 3.3e-112
Identity = 219/279 (78.49%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES++P KK +   EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVKM+NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850.1 vs. NCBI nr
Match: KAG7017643.1 (Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 219/279 (78.49%), Postives = 238/279 (85.30%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ESTA  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850.1 vs. NCBI nr
Match: XP_022935622.1 (ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG6580885.1 Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 219/279 (78.49%), Postives = 238/279 (85.30%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ESTA  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850.1 vs. NCBI nr
Match: XP_004136640.2 (ribosomal RNA small subunit methyltransferase nep-1 [Cucumis sativus] >KAE8651185.1 hypothetical protein Csa_001834 [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 218/279 (78.14%), Postives = 235/279 (84.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     EST+P KK +   EPDEE      AKEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEE-----PAKEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PI P DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVK++NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850.1 vs. ExPASy Swiss-Prot
Match: Q06287 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EMG1 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.0e-45
Identity = 98/225 (43.56%), Postives = 144/225 (64.00%), Query Frame = 0


Query: 56  PIVPSDPK-SAGVIFVLERASLEVAKVKGN------YELLNSDDHSKIIRRYNRNPGDYR 115
           P++ S  K +  +I VL  ASLE  K+  N      Y LLN DDH  ++++  R+  + R
Sbjct: 29  PVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEAR 88

Query: 116 PDICHQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQK 175
           PDI HQ LL + DS I KAG+L+ VY++T +G+LIE+ P VR+PRT KRF GLM++LL K
Sbjct: 89  PDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHK 148

Query: 176 LSITAVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVV 235
           LSI +V   +KLL++IKNP+T +LP   RK+  S  +  ++++Q+Y++ + DD  +   V
Sbjct: 149 LSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDA-PVIRVQDYIEKLDDDESICVFV 208

Query: 236 GAMAHGKIDI--DYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           GAMA GK +   +Y D+ + +SNYPLSA    +  C    D WN+
Sbjct: 209 GAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 251

[Close]

BLAST of Sed0027850.1 vs. ExPASy Swiss-Prot
Match: Q9XX15 (Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX=6239 GN=Y39A1A.14 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.9e-44
Identity = 94/202 (46.53%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 70  VLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAKAGR 129
           VLE  SLE AKV G Y +L+SD H+  +R+  ++P DYRPDI HQ LLN+ DS + +AG+
Sbjct: 31  VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90

Query: 130 LKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKNPVT 189
           L+ V+ +T K +L+++ P  R+PRT  RF GLM++LL KLSI A     KL+ ++KNPV+
Sbjct: 91  LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 150

Query: 190 QYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLSISN 249
            +LP  SRKM  S +  +L  M N L A + D  LV ++G +A GKI +DY D    ISN
Sbjct: 151 NHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 210

Query: 250 YPLSAGCCIADICKVLADKWNV 272
           YPLSA    A +   L + W +
Sbjct: 211 YPLSAALTCAKVTSGLEEIWGI 230

[Close]

BLAST of Sed0027850.1 vs. ExPASy Swiss-Prot
Match: Q92979 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4)

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-43
Identity = 94/205 (45.85%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 67  VIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAK 126
           +I VLE ASLE  KV   YELLN D H  I+ +  R+PG+ RPDI HQ+LL + DS + +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNR 102

Query: 127 AGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKN 186
           AG L+ VY+ T+K +LIE+ P  R+PRT  RF GLM++LL KLS+ A     KLL++IKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 162

Query: 187 PVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLS 246
           PV+ + P    K+G S S   +  + +  + V     +VFVVGA AHGK+ ++Y + ++S
Sbjct: 163 PVSDHFPVGCMKVGTSFS---IPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVS 222

Query: 247 ISNYPLSAGCCIADICKVLADKWNV 272
           ISNYPLSA    A +     + W V
Sbjct: 223 ISNYPLSAALTCAKLTTAFEEVWGV 243

[Close]

BLAST of Sed0027850.1 vs. ExPASy Swiss-Prot
Match: Q9W4J5 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX=7227 GN=CG3527 PE=3 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 4.4e-43
Identity = 94/210 (44.76%), Postives = 128/210 (60.95%), Query Frame = 0


Query: 67  VIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAK 126
           +I VLE A LE  KV   +ELLN DDH+ I+R+  R+PG  RPDI HQ LL +FDS + +
Sbjct: 43  LIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNR 102

Query: 127 AGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKN 186
           AG L+ V+V+TE  +LIEI P  R+PRT KRF GLM++LL K  I A     +L+ +IKN
Sbjct: 103 AGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKN 162

Query: 187 PVTQYLPANSRKMGFSHSSNKLVKMQNYL-----DAVKDDVDLVFVVGAMAHGKIDIDYA 246
           P+T ++P   +K   S S   L   ++ +      +   D  +V V+GA AHG +  DY 
Sbjct: 163 PITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYT 222

Query: 247 DDLLSISNYPLSAGCCIADICKVLADKWNV 272
           ++L SISNYPLSA    + IC    + W V
Sbjct: 223 EELFSISNYPLSAAIACSKICSAFEEVWGV 251

[Close]

BLAST of Sed0027850.1 vs. ExPASy Swiss-Prot
Match: O35130 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.7e-43
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 67  VIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAK 126
           +I VLE ASLE  KV   YELLN D H  ++ +  R+PG+ RPDI HQ+LL + DS + +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query: 127 AGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKN 186
           AG L+ VY+ T+K +LIE+ P  R+PRT  RF GLM++LL KLS+ A     KLL++IKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 162

Query: 187 PVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLS 246
           PV+ + P    K+G S S   +  ++   + V     +VFVVGA AHGK+ ++Y + ++S
Sbjct: 163 PVSDHFPVGCMKIGTSFSVEDISDIR---ELVPSSDPVVFVVGAFAHGKVSVEYTEKMVS 222

Query: 247 ISNYPLSAGCCIADICKVLADKWNV 272
           ISNYPLSA    A +     + W V
Sbjct: 223 ISNYPLSAALTCAKVTTAFEEVWGV 243

[Close]

BLAST of Sed0027850.1 vs. ExPASy TrEMBL
Match: A0A5D3DPQ6 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006800 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.6e-112
Identity = 219/279 (78.49%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES++P KK +   EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVKM+NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850.1 vs. ExPASy TrEMBL
Match: A0A1S3B7L0 (ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LOC103486891 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.6e-112
Identity = 219/279 (78.49%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES++P KK +   EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVKM+NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850.1 vs. ExPASy TrEMBL
Match: A0A0A0LFI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 6.0e-112
Identity = 218/279 (78.14%), Postives = 235/279 (84.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     EST+P KK +   EPDEE      AKEDFHEL  I
Sbjct: 33  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEE-----PAKEDFHELEGI 92

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PI P DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 93  PIAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 152

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 153 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 212

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVK++NYLDAVKDDVDLVFVVGAMA
Sbjct: 213 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMA 272

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 273 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 306

[Close]

BLAST of Sed0027850.1 vs. ExPASy TrEMBL
Match: A0A6J1F634 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=3662 GN=LOC111442430 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 6.0e-112
Identity = 219/279 (78.49%), Postives = 238/279 (85.30%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ESTA  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850.1 vs. ExPASy TrEMBL
Match: A0A6J1J0G6 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 GN=LOC111482341 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 3.0e-111
Identity = 218/279 (78.14%), Postives = 237/279 (84.95%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES A  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESIASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850.1 vs. TAIR 10
Match: AT3G57000.1 (nucleolar essential protein-related )

HSP 1 Score: 288.5 bits (737), Expect = 5.6e-78
Identity = 164/299 (54.85%), Postives = 207/299 (69.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREV-YDRE--------------------STAPEKKSLGAEEPDEEE 60
           M RP+  K  KRK RE  YD+E                      A ++ +  AEE ++EE
Sbjct: 1   MVRPYGIKVNKRKEREERYDKEEDEVEEQPKFEQKQKARESSKKAKKESTSRAEEDNDEE 60

Query: 61  PLN---GAAKEDFHELGSIPIVPSDP--KSAGVIFVLERASLEVAKVKGNYELLNSDDHS 120
            +     AA ED   +G IPIV + P  + +G++FVLE+ASLEVAKV   Y+LLNSDDH+
Sbjct: 61  EVTVEATAAAEDI--VGGIPIVLNAPNKEKSGIVFVLEKASLEVAKVGKTYQLLNSDDHA 120

Query: 121 KIIRRYNRNPGDYRPDICHQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRT 180
             +++ NRNP DYRPDI HQALL I DS + KAGRLKAVYV+TEKG+L E+KP+VR+PRT
Sbjct: 121 NFLKKNNRNPADYRPDITHQALLMILDSPVNKAGRLKAVYVRTEKGVLFEVKPHVRIPRT 180

Query: 181 QKRFYGLMLELLQKLSITAVGQRDKLLRLIKNPVTQ-YLPANSRKMGFSHSSNKLVKMQN 240
            KRF G+ML+LLQKLSITAV  R+KLLR +KNP+ + +LP NS ++GFSHSS KLV MQ 
Sbjct: 181 FKRFAGIMLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPVNSHRIGFSHSSEKLVNMQK 240

Query: 241 YLDAV-KDDVDLVFVVGAMAHGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           +L  V  DD D VFVVGAMAHGKID +Y D+ +S+S YPLSA  CI+ IC+ LA  WN+
Sbjct: 241 HLATVCDDDRDTVFVVGAMAHGKIDCNYIDEFVSVSEYPLSAAYCISRICEALATNWNI 297

The following BLAST results are available for this feature:

BLAST of Sed0027850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905075.1	1.1e-112	78.49	ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida]	[more]
XP_008443268.1	3.3e-112	78.49	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KA...	[more]
KAG7017643.1	1.2e-111	78.49	Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrospe...	[more]
XP_022935622.1	1.2e-111	78.49	ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG658...	[more]
XP_004136640.2	1.2e-111	78.14	ribosomal RNA small subunit methyltransferase nep-1 [Cucumis sativus] >KAE865118...	[more]

BLAST of Sed0027850.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06287	8.0e-45	43.56	Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (...	[more]
Q9XX15	3.9e-44	46.53	Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX...	[more]
Q92979	2.6e-43	45.85	Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EM...	[more]
Q9W4J5	4.4e-43	44.76	Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX...	[more]
O35130	5.7e-43	45.37	Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=E...	[more]

BLAST of Sed0027850.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPQ6	1.6e-112	78.49	Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3B7L0	1.6e-112	78.49	ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0LFI3	6.0e-112	78.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1	[more]
A0A6J1F634	6.0e-112	78.49	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1J0G6	3.0e-111	78.14	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Sed0027850.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57000.1	5.6e-78	54.85	nucleolar essential protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PFAM	PF03587	EMG1	coord: 69..264 e-value: 4.2E-65 score: 219.2
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PANTHER	PTHR12636	NEP1/MRA1	coord: 9..271
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	CDD	cd18088	Nep1-like	coord: 67..262 e-value: 1.63369E-93 score: 272.481
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 67..272 e-value: 4.3E-79 score: 266.6
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 61..271

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0027850	Sed0027850	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027850.1-exon	Sed0027850.1-exon-LG06:10652167..10652585	exon
Sed0027850.1-exon	Sed0027850.1-exon-LG06:10653339..10653396	exon
Sed0027850.1-exon	Sed0027850.1-exon-LG06:10653487..10653569	exon
Sed0027850.1-exon	Sed0027850.1-exon-LG06:10653644..10653754	exon
Sed0027850.1-exon	Sed0027850.1-exon-LG06:10653873..10654017	exon
Sed0027850.1-exon	Sed0027850.1-exon-LG06:10654200..10654292	exon
Sed0027850.1-exon	Sed0027850.1-exon-LG06:10654516..10654902	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027850.1-three_prime_utr	Sed0027850.1-three_prime_utr-LG06:10652167..10652505	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027850.1-cds	Sed0027850.1-cds-LG06:10652506..10652585	CDS
Sed0027850.1-cds	Sed0027850.1-cds-LG06:10653339..10653396	CDS
Sed0027850.1-cds	Sed0027850.1-cds-LG06:10653487..10653569	CDS
Sed0027850.1-cds	Sed0027850.1-cds-LG06:10653644..10653754	CDS
Sed0027850.1-cds	Sed0027850.1-cds-LG06:10653873..10654017	CDS
Sed0027850.1-cds	Sed0027850.1-cds-LG06:10654200..10654292	CDS
Sed0027850.1-cds	Sed0027850.1-cds-LG06:10654516..10654764	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027850.1-five_prime_utr	Sed0027850.1-five_prime_utr-LG06:10654765..10654902	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0027850.1	Sed0027850.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0070037	rRNA (pseudouridine) methyltransferase activity
molecular_function	GO:0019843	rRNA binding