Sed0027850 (gene) Chayote v1

Overview


Name	Sed0027850
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribosomal RNA small subunit methyltransferase NEP1
Location	LG06: 10652167 .. 10654902 (-)
RNA-Seq Expression	Sed0027850
Synteny	Sed0027850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCCATAACCCAAGCGCTGTGGTGGTTGCCGCTAGGTTTCAACGATAGTGTATATATCCAATTCAATTTCTAGGGTTTATGCTTGCCGCGATCTTTCGACGACAATCCAGAAGCATTAGCTTCACTCCTGTTCACAATGGGTCGACCTTTTGATGCGAAGGGGAAGAAGAGAAAGAATAGGGAGGTATACGACAGAGAATCGACCGCACCGGAGAAGAAGTCTTTGGGGGCGGAGGAGCCTGATGAAGAAGAACCACTGAATGGAGCAGCAAAAGAAGACTTCCACGAGCTTGGAAGTATTCCAATTGTTCCAAGTGACCCCAAAAGTGCTGGTGTCATCTTCGTTCTCGAGAGAGCTTCTCTGGAGGTCGCCAAAGTTAAGGGGGTACGTCTCTTCTAGATGTACAGTTTGTTTTTTTCGGGGCTAGATGGATGACAAATTTTGTATTTGAATTTCAGTGGGGGATAGCTGTTTACTTAACCTAGTTATTCATATTCCATTATCTGTTTATAGAATTATCAGCTGTTAAATTCCGATGACCACTCCAATTTCAGTGGAGGGATAGATGGATGAAAAATAATCGGATTTCAATGTTTCCTGCGTATAGAATTATGAGCTGTTAAATTCCGATGACCATTCCAAAATTATTCGGAGATACAACAGAAATCCTGGAGATTACAGACCAGATATCTGCCATCAAGTAAGTACTGCTATTTTGCATTTGGATAGAGATTTTCTAGGTAGAGGAGAGTGGGAGCTTTGTATGTATAAGTATCAGAAGTGGTGTTAATTTTAAAAATGAATTACCTTTAGGGAAAGGAGAAAGGGAGCTGGTATGTCTATATTTGTGTATAGAATTGATGTTAAATGTCATTCATTCAGGCTCTGTTGAATATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGCCGTTTATGTGAAAACTGAGAAAGGCTTATTGATTGAAATTAAACCATATGTTCGTCTGCCAAGGACGCAAAAGCGCTTTTATGGACTTATGTGTAAGTGTATTTTCTTGTTCTACTTTTGCTGAACATCTCTTTAGTTCTACTTGCTGGGCCCGTTTTGATACATGGAGATTTCAGATTGACCCTTTTCCAAATTCCAAATTCTTTGCAGTGGAATTGCTACAAAAGTTAAGCATCACAGCTGTTGGCCAGCGTGATAAACTTTTACGCCTGATCAAAAATCCTGTAACTCAATATTTACCTGCCAATTCTCGTAAGATGGGTAAGCTTAAACCCTACTCTATGTGAGTTTTGTGTTTAGGTAGGAACTTTGCATATTGTTTTCTTGCATTTCAGGCTTCTCACACAGTTCAAACAAGTTGGTCAAGATGCAGAATTATCTGGATGCGGTCAAAGATGATGTAGACCTTGTTTTTGTGGTACCTTTAAAACTCAGAACTGAAAATTCCACTTTTCTACGCTACATTTATATTGCATACGATCTACTTCCCTTTACTGCAATGTTTTAGGTAGGTGCTATGGCTCATGGGAAAATTGATATTGATTACGCAGATGATCTTTTATCCAGTAAGTTTGTTTTTCTGTGTTGTCTTTTTTATTAAAATAATATAAATTTTAAGTGTTCCTGTGCCTATCTTAACTTTTCTTTCATTTGAGGACATAGATGTTAGTTGTTTTAGCTCAGCGTAGCGTACTGATTCTGTTGTAGTATGTGATAGAAATCTCTATGGAGGAAATGGGTGGGATCAGATATTGGTGAGAAAAGCTAGCGTAGAGGTAGAGGGAAGTTTAGAGAGAAAGTGTGCAGAAGTATCAATGCTTCTTGTACTTCTTTGAACAGTGTTTCCGTGTTATTTTAGTACATTGATATGCTAATAGTTGAAGATTGTATTTTGTTTTTTGATGAAAGATATTTATATTTGCAATGTATTGATGACCCAAATCAACCCAACCCAACCCAAAAATATAAAAGTTGGGTTGGGTTGGAAAAGTGATCAATCCGGGTTAATTTCCTCAACCCAACCCAAACCCATGTACACCCTAGTTTTAACCCTTCAATTAAAGTAGCTTGGGTTAATATGTTTTATTTATTTGTTCAAAAGAATATAATATATGTTTAATTTATATGACTACCTATTTCATTTTTAACAAATCTAGTATGATTGGACCTTCGAGTTAAATTTAAGCAGAGGTGCATTGGTATATAAAAAGTTCTTTCAAACAATTATCTTTTCGGGCAGTATATACTTTTGAATGCATTAGCTAGCTGTGAAATCATATATTCTGCGAGTGACAATATTTCCTGTTATATTTTTGCAGTTTCTAATTATCCTCTCAGTGCTGGTTGCTGTATTGCTGACATTTGCAAAGTTTTGGCCGACAAATGGAATGTATGGTGAACCATGCTGACAACTCTATATCATATTAAGTTTCATATTCTTATTTCTTGTTTATGAAGTTGGGTAGTAGAGTTTAGAGGTGTTTTATTGTAGGGAACCATAACAGAAGAGATTCCATTATTTTCTAGTGATATATATAAATACATGAATATATGTATAAAATTTTTAATTCAACAACAATTGGGGTGATGAATTAGAACATGTAATTAAGTCATACATGATGCCGCCCCATTTGGGAACTGTAGTGGCAAGTTCAGTTCTATTTAGGTATTTTATGTGTGTAGCGAATGCTCAATGGATTAAAGTTTCAAATATATCATGAATTTTACTATATTTCAA

mRNA sequence

CAGCCCATAACCCAAGCGCTGTGGTGGTTGCCGCTAGGTTTCAACGATAGTGTATATATCCAATTCAATTTCTAGGGTTTATGCTTGCCGCGATCTTTCGACGACAATCCAGAAGCATTAGCTTCACTCCTGTTCACAATGGGTCGACCTTTTGATGCGAAGGGGAAGAAGAGAAAGAATAGGGAGGTATACGACAGAGAATCGACCGCACCGGAGAAGAAGTCTTTGGGGGCGGAGGAGCCTGATGAAGAAGAACCACTGAATGGAGCAGCAAAAGAAGACTTCCACGAGCTTGGAAGTATTCCAATTGTTCCAAGTGACCCCAAAAGTGCTGGTGTCATCTTCGTTCTCGAGAGAGCTTCTCTGGAGGTCGCCAAAGTTAAGGGGAATTATGAGCTGTTAAATTCCGATGACCATTCCAAAATTATTCGGAGATACAACAGAAATCCTGGAGATTACAGACCAGATATCTGCCATCAAGCTCTGTTGAATATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGCCGTTTATGTGAAAACTGAGAAAGGCTTATTGATTGAAATTAAACCATATGTTCGTCTGCCAAGGACGCAAAAGCGCTTTTATGGACTTATGTTGGAATTGCTACAAAAGTTAAGCATCACAGCTGTTGGCCAGCGTGATAAACTTTTACGCCTGATCAAAAATCCTGTAACTCAATATTTACCTGCCAATTCTCGTAAGATGGGCTTCTCACACAGTTCAAACAAGTTGGTCAAGATGCAGAATTATCTGGATGCGGTCAAAGATGATGTAGACCTTGTTTTTGTGGTAGGTGCTATGGCTCATGGGAAAATTGATATTGATTACGCAGATGATCTTTTATCCATTTCTAATTATCCTCTCAGTGCTGGTTGCTGTATTGCTGACATTTGCAAAGTTTTGGCCGACAAATGGAATGTATGGTGAACCATGCTGACAACTCTATATCATATTAAGTTTCATATTCTTATTTCTTGTTTATGAAGTTGGGTAGTAGAGTTTAGAGGTGTTTTATTGTAGGGAACCATAACAGAAGAGATTCCATTATTTTCTAGTGATATATATAAATACATGAATATATGTATAAAATTTTTAATTCAACAACAATTGGGGTGATGAATTAGAACATGTAATTAAGTCATACATGATGCCGCCCCATTTGGGAACTGTAGTGGCAAGTTCAGTTCTATTTAGGTATTTTATGTGTGTAGCGAATGCTCAATGGATTAAAGTTTCAAATATATCATGAATTTTACTATATTTCAA

Coding sequence (CDS)

ATGGGTCGACCTTTTGATGCGAAGGGGAAGAAGAGAAAGAATAGGGAGGTATACGACAGAGAATCGACCGCACCGGAGAAGAAGTCTTTGGGGGCGGAGGAGCCTGATGAAGAAGAACCACTGAATGGAGCAGCAAAAGAAGACTTCCACGAGCTTGGAAGTATTCCAATTGTTCCAAGTGACCCCAAAAGTGCTGGTGTCATCTTCGTTCTCGAGAGAGCTTCTCTGGAGGTCGCCAAAGTTAAGGGGAATTATGAGCTGTTAAATTCCGATGACCATTCCAAAATTATTCGGAGATACAACAGAAATCCTGGAGATTACAGACCAGATATCTGCCATCAAGCTCTGTTGAATATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGCCGTTTATGTGAAAACTGAGAAAGGCTTATTGATTGAAATTAAACCATATGTTCGTCTGCCAAGGACGCAAAAGCGCTTTTATGGACTTATGTTGGAATTGCTACAAAAGTTAAGCATCACAGCTGTTGGCCAGCGTGATAAACTTTTACGCCTGATCAAAAATCCTGTAACTCAATATTTACCTGCCAATTCTCGTAAGATGGGCTTCTCACACAGTTCAAACAAGTTGGTCAAGATGCAGAATTATCTGGATGCGGTCAAAGATGATGTAGACCTTGTTTTTGTGGTAGGTGCTATGGCTCATGGGAAAATTGATATTGATTACGCAGATGATCTTTTATCCATTTCTAATTATCCTCTCAGTGCTGGTTGCTGTATTGCTGACATTTGCAAAGTTTTGGCCGACAAATGGAATGTATGGTGA

Protein sequence

MGRPFDAKGKKRKNREVYDRESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSIPIVPSDPKSAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNVW

Homology

[Close]

BLAST of Sed0027850 vs. NCBI nr
Match: XP_038905075.1 (ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida])

HSP 1 Score: 417.2 bits (1071), Expect = 1.1e-112
Identity = 219/279 (78.49%), Postives = 235/279 (84.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     EST P KK     EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKSEKYDRDDDDGESTVPAKKPTAENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDP---KSAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DP   K AGVIFVLERASLEVAKV  NY+LLNSDDHS  +R+ NRNPGDYRPDI 
Sbjct: 61  PIVPKDPNSDKHAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRKNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLKAVYVKTEKGLLIE+KPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKAVYVKTEKGLLIEVKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPANSRKMGFSHSS+KLVKM+NYLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANSRKMGFSHSSDKLVKMRNYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWN+
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNI 274

[Close]

BLAST of Sed0027850 vs. NCBI nr
Match: XP_008443268.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KAA0053876.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa] >TYK25528.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 3.3e-112
Identity = 219/279 (78.49%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES++P KK +   EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVKM+NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850 vs. NCBI nr
Match: KAG7017643.1 (Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 219/279 (78.49%), Postives = 238/279 (85.30%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ESTA  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850 vs. NCBI nr
Match: XP_022935622.1 (ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG6580885.1 Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 219/279 (78.49%), Postives = 238/279 (85.30%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ESTA  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850 vs. NCBI nr
Match: XP_004136640.2 (ribosomal RNA small subunit methyltransferase nep-1 [Cucumis sativus] >KAE8651185.1 hypothetical protein Csa_001834 [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 218/279 (78.14%), Postives = 235/279 (84.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     EST+P KK +   EPDEE      AKEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEE-----PAKEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PI P DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVK++NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850 vs. ExPASy Swiss-Prot
Match: Q06287 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EMG1 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.0e-45
Identity = 98/225 (43.56%), Postives = 144/225 (64.00%), Query Frame = 0


Query: 56  PIVPSDPK-SAGVIFVLERASLEVAKVKGN------YELLNSDDHSKIIRRYNRNPGDYR 115
           P++ S  K +  +I VL  ASLE  K+  N      Y LLN DDH  ++++  R+  + R
Sbjct: 29  PVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEAR 88

Query: 116 PDICHQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQK 175
           PDI HQ LL + DS I KAG+L+ VY++T +G+LIE+ P VR+PRT KRF GLM++LL K
Sbjct: 89  PDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHK 148

Query: 176 LSITAVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVV 235
           LSI +V   +KLL++IKNP+T +LP   RK+  S  +  ++++Q+Y++ + DD  +   V
Sbjct: 149 LSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDA-PVIRVQDYIEKLDDDESICVFV 208

Query: 236 GAMAHGKIDI--DYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           GAMA GK +   +Y D+ + +SNYPLSA    +  C    D WN+
Sbjct: 209 GAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 251

[Close]

BLAST of Sed0027850 vs. ExPASy Swiss-Prot
Match: Q9XX15 (Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX=6239 GN=Y39A1A.14 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.9e-44
Identity = 94/202 (46.53%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 70  VLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAKAGR 129
           VLE  SLE AKV G Y +L+SD H+  +R+  ++P DYRPDI HQ LLN+ DS + +AG+
Sbjct: 31  VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90

Query: 130 LKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKNPVT 189
           L+ V+ +T K +L+++ P  R+PRT  RF GLM++LL KLSI A     KL+ ++KNPV+
Sbjct: 91  LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 150

Query: 190 QYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLSISN 249
            +LP  SRKM  S +  +L  M N L A + D  LV ++G +A GKI +DY D    ISN
Sbjct: 151 NHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 210

Query: 250 YPLSAGCCIADICKVLADKWNV 272
           YPLSA    A +   L + W +
Sbjct: 211 YPLSAALTCAKVTSGLEEIWGI 230

[Close]

BLAST of Sed0027850 vs. ExPASy Swiss-Prot
Match: Q92979 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4)

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-43
Identity = 94/205 (45.85%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 67  VIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAK 126
           +I VLE ASLE  KV   YELLN D H  I+ +  R+PG+ RPDI HQ+LL + DS + +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNR 102

Query: 127 AGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKN 186
           AG L+ VY+ T+K +LIE+ P  R+PRT  RF GLM++LL KLS+ A     KLL++IKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 162

Query: 187 PVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLS 246
           PV+ + P    K+G S S   +  + +  + V     +VFVVGA AHGK+ ++Y + ++S
Sbjct: 163 PVSDHFPVGCMKVGTSFS---IPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVS 222

Query: 247 ISNYPLSAGCCIADICKVLADKWNV 272
           ISNYPLSA    A +     + W V
Sbjct: 223 ISNYPLSAALTCAKLTTAFEEVWGV 243

[Close]

BLAST of Sed0027850 vs. ExPASy Swiss-Prot
Match: Q9W4J5 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX=7227 GN=CG3527 PE=3 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 4.4e-43
Identity = 94/210 (44.76%), Postives = 128/210 (60.95%), Query Frame = 0


Query: 67  VIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAK 126
           +I VLE A LE  KV   +ELLN DDH+ I+R+  R+PG  RPDI HQ LL +FDS + +
Sbjct: 43  LIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNR 102

Query: 127 AGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKN 186
           AG L+ V+V+TE  +LIEI P  R+PRT KRF GLM++LL K  I A     +L+ +IKN
Sbjct: 103 AGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKN 162

Query: 187 PVTQYLPANSRKMGFSHSSNKLVKMQNYL-----DAVKDDVDLVFVVGAMAHGKIDIDYA 246
           P+T ++P   +K   S S   L   ++ +      +   D  +V V+GA AHG +  DY 
Sbjct: 163 PITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYT 222

Query: 247 DDLLSISNYPLSAGCCIADICKVLADKWNV 272
           ++L SISNYPLSA    + IC    + W V
Sbjct: 223 EELFSISNYPLSAAIACSKICSAFEEVWGV 251

[Close]

BLAST of Sed0027850 vs. ExPASy Swiss-Prot
Match: O35130 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.7e-43
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 67  VIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDICHQALLNIFDSRIAK 126
           +I VLE ASLE  KV   YELLN D H  ++ +  R+PG+ RPDI HQ+LL + DS + +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query: 127 AGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSITAVGQRDKLLRLIKN 186
           AG L+ VY+ T+K +LIE+ P  R+PRT  RF GLM++LL KLS+ A     KLL++IKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 162

Query: 187 PVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMAHGKIDIDYADDLLS 246
           PV+ + P    K+G S S   +  ++   + V     +VFVVGA AHGK+ ++Y + ++S
Sbjct: 163 PVSDHFPVGCMKIGTSFSVEDISDIR---ELVPSSDPVVFVVGAFAHGKVSVEYTEKMVS 222

Query: 247 ISNYPLSAGCCIADICKVLADKWNV 272
           ISNYPLSA    A +     + W V
Sbjct: 223 ISNYPLSAALTCAKVTTAFEEVWGV 243

[Close]

BLAST of Sed0027850 vs. ExPASy TrEMBL
Match: A0A5D3DPQ6 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006800 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.6e-112
Identity = 219/279 (78.49%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES++P KK +   EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVKM+NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850 vs. ExPASy TrEMBL
Match: A0A1S3B7L0 (ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LOC103486891 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.6e-112
Identity = 219/279 (78.49%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES++P KK +   EPDEE P     KEDFHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVKM+NYLDAVKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 274

[Close]

BLAST of Sed0027850 vs. ExPASy TrEMBL
Match: A0A0A0LFI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 6.0e-112
Identity = 218/279 (78.14%), Postives = 235/279 (84.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     EST+P KK +   EPDEE      AKEDFHEL  I
Sbjct: 33  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEE-----PAKEDFHELEGI 92

Query: 61  PIVPSDPK---SAGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PI P DPK   +AGVIF+LERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 93  PIAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 152

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 153 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 212

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLPAN RKMGFSHSS+KLVK++NYLDAVKDDVDLVFVVGAMA
Sbjct: 213 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMA 272

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+ DY DDLL+IS YPLSA CCIADICK LA+KWNV
Sbjct: 273 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 306

[Close]

BLAST of Sed0027850 vs. ExPASy TrEMBL
Match: A0A6J1F634 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=3662 GN=LOC111442430 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 6.0e-112
Identity = 219/279 (78.49%), Postives = 238/279 (85.30%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ESTA  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850 vs. ExPASy TrEMBL
Match: A0A6J1J0G6 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 GN=LOC111482341 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 3.0e-111
Identity = 218/279 (78.14%), Postives = 237/279 (84.95%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREVYDR-----ESTAPEKKSLGAEEPDEEEPLNGAAKEDFHELGSI 60
           M RPF AKGKKRK  E YDR     ES A  KK++   EPD E+P N AA+E+FHEL  I
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESIASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPSDPKS---AGVIFVLERASLEVAKVKGNYELLNSDDHSKIIRRYNRNPGDYRPDIC 120
           PIVP DPKS   AGVIFVLERASLEVAKV  NY+LLNSDDHS  +RR NRNPGDYRPDI 
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRTQKRFYGLMLELLQKLSIT 180
           HQALL IFDSRIAKAGRLK VYVKTEKGLLIEIKPYVRLPRTQKRFYG+ML+LLQKLSIT
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AVGQRDKLLRLIKNPVTQYLPANSRKMGFSHSSNKLVKMQNYLDAVKDDVDLVFVVGAMA 240
           A G+R+KL R+IKNPVTQYLP+NSRKMGFSHSS+KLVK++ YLDAV+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           HGKI+  Y DDLL+IS YPLSA CCIADICK LADKWNV
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV 278

[Close]

BLAST of Sed0027850 vs. TAIR 10
Match: AT3G57000.1 (nucleolar essential protein-related )

HSP 1 Score: 288.5 bits (737), Expect = 5.6e-78
Identity = 164/299 (54.85%), Postives = 207/299 (69.23%), Query Frame = 0


Query: 1   MGRPFDAKGKKRKNREV-YDRE--------------------STAPEKKSLGAEEPDEEE 60
           M RP+  K  KRK RE  YD+E                      A ++ +  AEE ++EE
Sbjct: 1   MVRPYGIKVNKRKEREERYDKEEDEVEEQPKFEQKQKARESSKKAKKESTSRAEEDNDEE 60

Query: 61  PLN---GAAKEDFHELGSIPIVPSDP--KSAGVIFVLERASLEVAKVKGNYELLNSDDHS 120
            +     AA ED   +G IPIV + P  + +G++FVLE+ASLEVAKV   Y+LLNSDDH+
Sbjct: 61  EVTVEATAAAEDI--VGGIPIVLNAPNKEKSGIVFVLEKASLEVAKVGKTYQLLNSDDHA 120

Query: 121 KIIRRYNRNPGDYRPDICHQALLNIFDSRIAKAGRLKAVYVKTEKGLLIEIKPYVRLPRT 180
             +++ NRNP DYRPDI HQALL I DS + KAGRLKAVYV+TEKG+L E+KP+VR+PRT
Sbjct: 121 NFLKKNNRNPADYRPDITHQALLMILDSPVNKAGRLKAVYVRTEKGVLFEVKPHVRIPRT 180

Query: 181 QKRFYGLMLELLQKLSITAVGQRDKLLRLIKNPVTQ-YLPANSRKMGFSHSSNKLVKMQN 240
            KRF G+ML+LLQKLSITAV  R+KLLR +KNP+ + +LP NS ++GFSHSS KLV MQ 
Sbjct: 181 FKRFAGIMLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPVNSHRIGFSHSSEKLVNMQK 240

Query: 241 YLDAV-KDDVDLVFVVGAMAHGKIDIDYADDLLSISNYPLSAGCCIADICKVLADKWNV 272
           +L  V  DD D VFVVGAMAHGKID +Y D+ +S+S YPLSA  CI+ IC+ LA  WN+
Sbjct: 241 HLATVCDDDRDTVFVVGAMAHGKIDCNYIDEFVSVSEYPLSAAYCISRICEALATNWNI 297

The following BLAST results are available for this feature:

BLAST of Sed0027850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905075.1	1.1e-112	78.49	ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida]	[more]
XP_008443268.1	3.3e-112	78.49	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KA...	[more]
KAG7017643.1	1.2e-111	78.49	Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrospe...	[more]
XP_022935622.1	1.2e-111	78.49	ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG658...	[more]
XP_004136640.2	1.2e-111	78.14	ribosomal RNA small subunit methyltransferase nep-1 [Cucumis sativus] >KAE865118...	[more]

BLAST of Sed0027850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06287	8.0e-45	43.56	Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (...	[more]
Q9XX15	3.9e-44	46.53	Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX...	[more]
Q92979	2.6e-43	45.85	Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EM...	[more]
Q9W4J5	4.4e-43	44.76	Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX...	[more]
O35130	5.7e-43	45.37	Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=E...	[more]

BLAST of Sed0027850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPQ6	1.6e-112	78.49	Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3B7L0	1.6e-112	78.49	ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0LFI3	6.0e-112	78.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1	[more]
A0A6J1F634	6.0e-112	78.49	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1J0G6	3.0e-111	78.14	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Sed0027850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57000.1	5.6e-78	54.85	nucleolar essential protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PFAM	PF03587	EMG1	coord: 69..200 e-value: 2.3E-48 score: 164.6
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PANTHER	PTHR12636	NEP1/MRA1	coord: 9..200
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	CDD	cd18088	Nep1-like	coord: 67..200 e-value: 4.63934E-66 score: 200.064
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 67..204 e-value: 6.4E-54 score: 184.5
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 61..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027850.1	Sed0027850.1	mRNA
Sed0027850.2	Sed0027850.2	mRNA
Sed0027850.3	Sed0027850.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0070037	rRNA (pseudouridine) methyltransferase activity