Sed0027176.1 (mRNA) Chayote v1

Overview


Name	Sed0027176.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Rhodanese domain-containing protein
Location	LG07: 2190752 .. 2193303 (+)
Sequence length	765
RNA-Seq Expression	Sed0027176.1
Synteny	Sed0027176.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCGACCAAGCTTCTTCTGATAAGATAAACTTGGAGTCCATTTTGGTTTCCATTGATGAGTTCTTCAGTAGATACCCTTTTTTGTAGCTGGGTGTACTTTCATTTGGCTTGTTGGGGTGCCCTTGATTGAGTACTTCCTTTTCAGGAAGTTCAAGTTCGTTTCTGCCATTGATGGGTTTCGCAAGATCCGGGCCGACCCGAATGCTCAGCTCTTGGATGTTAGGGATGAGAAGAGTTTGGGGATTTTGGGGGCTCCTAATTTGAGGATTTTGAATAAGGATGTGGTGCAGGTTGCTTATTCTGAGGAGGATGAAGATGGGTTTGTGAAGAAGGTGAAAAAATGCTTTGGAGATGGTGGTGATACTCTGGTTTTAGTAAGTTTGTTGCCATTTACTTCATATGGAAACTTGGAAATGAAAATGGATTTGTGTGAGTTATTTGGATAATGGAAATTTATGAAAAATTCAAATTTTTTTATCTTGGGTTTTGGTTACTGTATTGTGATAAAATGGCCTGAGCTTAGGATAACTTTTAAGAATGAAACTTGGGATGAGTTTTGAGAATATTGCTTTTGAGTGTATTTTGAGTTTTGTTGACAACCAAATATTGTCAAATATAATAGAGGCAGAAAATAGCATTCTGCTAAGTTTTCCTTGACTTATGTAGTTTTTTTTTAAAATTTAAATGAGAAAATAAATTTCATTGAGAGAAAAAAAAAGTATAAACGAAAACCTTGACAACCAAATATAAAGTATAGTCGAGATGCTCGCTTGAACACTTACTGATATTAAAAGTACTAAAGAAACATGTGGGCATACAGAAAGAATCCCCAACAAGAGAAGATGATGATTTTTCGTTGGATTTAAATGAGCTTGACTTCTGTTGTCAAACAAACTCATTGAATAGATACTTGCGATCATACACTGCTAGTTGGAAATTTTCGTGTATCGAATCATGTCAAACGGTTTTCTTACTTAGCTAGTACTGCCTAGATTAAACAGAAGGCTCCAAGTTTTCTTGCGGATTATATGTGTTCGATTTCATCATGTGTTGTGCTTTTGATGTGTAAGGTAGTTTTGATGGTAATTCCATGAAAGTGGCTGAGTTGTTGTTCAAGAACGGCTTCAAGGAGGCTTATGCAATCAAGGATGGAGTTAGGGGCCAAAAAGGGTGGTTGGTATGCATCCTACTATGATACTCGTATATTGACGTCGTCGTAAATTTTGTTTTCTCTTCTGATAACCGTGTGACTAAGAAGGAAAAAGATGGCATGTCCAAAATCTAAGATCATCATCATCCTTATTCTCTTCTAAATCTAATATGGTTTGGATCCATATGATTTTCTTTCTTTGACAGGTAATAACTTTGGCAATAATTAAAGCCAAAAAATCAAACTTAAAGAAACAAAACAAAACAACAGAGAGAACTGAAACACAAACCATCTAACTACATTAAGCTCAAAATAGAACAAACCATCTAGAATATTTTCAACTTTGAATTTTCTTAAAACTTAATCGACGGACATTAATAAATTGATTCCAGTTGGTATCATCAATTTTCCAGAGTTTTTTCATTTATACTATACTATATATCTCTATATATGCCCATAATTACTATGGTGAAAAAAGTCATTTTCTTTTCTTTCTCCTCAATCTAGGCCAGCTTGCGTGCCACTTTGACTAATGTCACGGGCTATATCGCTTAACCTTACAACATTTGGATGTCAAGGAAATTTGTAAGAAATTAATTTCTAGGTAGATGGTTACTATGAATTGAACTTGTCACCTCTTAGCTTTCCAAGTTCCTCTTTGAACACTGGGGCCACTCCATAATGGTTCGTACGTACCGTCTCTTAGTTTTAGGTATATGCCAATTGCCATTGCGCTAAGCTCACTTTGGCGACTCTTCCATTTTCTTTTTTAACTATTTTTATTGTATTGTTTGCAGGCAATACAGGAAAACCTATTACCACCTTCTGTCCACATGATCAAGAGGAAAAAAGCTAAAGCTTCCCAAAAGTTTGGGACCAATGGAGGAGTTGTCCAACAAAATAGAGACAGTGAGGCTGTTCCATTTTCGAAATCCTCCAGTGGAGAAGCCCAAGCATCACGCCTCCATGTCGATGCATCATCAGACACCGAGCCACAGTTGAAAACCCGGTTGAGATCATCGTCTCCTTATCCAAATGTAAGTTCACTCTGGAAACTGATATATCTTTAAGGTGAATTTATTTATCACTTTATAGTAGCTGAAAGATTCGATATTAACACTTTATAACACTCAAAACCCTTTGAAGTGCCCCCAAGGAGTCGCCTAATCAGTGATTTCCCTTAAGCTGCTTGTATAGTGTTTCATCAAAAAAATTATCTAAAAGTTGAAACTATATTATGTATAATGTTGTCCCTGTCATGATAGTTCTTGTATTTACTTTGATTGGGTATTTTCTGTGCATGTGGTGTACAGACTGACTCTTTAACACTGATATATGACAGTACCCAGATTTGAAACCACCATCTACTCCAACTCCCTCAAAGCCAGGGAAATGA

mRNA sequence

ATGGAAACCGACCAAGCTTCTTCTGATAAGATAAACTTGGAGTCCATTTTGGTTTCCATTGATGAGTTCTTCACTGGGTGTACTTTCATTTGGCTTGTTGGGGTGCCCTTGATTGAGTACTTCCTTTTCAGGAAGTTCAAGTTCGTTTCTGCCATTGATGGGTTTCGCAAGATCCGGGCCGACCCGAATGCTCAGCTCTTGGATGTTAGGGATGAGAAGAGTTTGGGGATTTTGGGGGCTCCTAATTTGAGGATTTTGAATAAGGATGTGGTGCAGGTTGCTTATTCTGAGGAGGATGAAGATGGGTTTGTGAAGAAGGTGAAAAAATGCTTTGGAGATGGTGGTGATACTCTGGTTTTAGTAAGTTTTTTTGATGGTAATTCCATGAAAGTGGCTGAGTTGTTGTTCAAGAACGGCTTCAAGGAGGCTTATGCAATCAAGGATGGAGTTAGGGGCCAAAAAGGGTGGTTGGCAATACAGGAAAACCTATTACCACCTTCTGTCCACATGATCAAGAGGAAAAAAGCTAAAGCTTCCCAAAAGTTTGGGACCAATGGAGGAGTTGTCCAACAAAATAGAGACAGTGAGGCTGTTCCATTTTCGAAATCCTCCAGTGGAGAAGCCCAAGCATCACGCCTCCATGTCGATGCATCATCAGACACCGAGCCACAGTTGAAAACCCGGTTGAGATCATCGTCTCCTTATCCAAATTACCCAGATTTGAAACCACCATCTACTCCAACTCCCTCAAAGCCAGGGAAATGA

Coding sequence (CDS)

ATGGAAACCGACCAAGCTTCTTCTGATAAGATAAACTTGGAGTCCATTTTGGTTTCCATTGATGAGTTCTTCACTGGGTGTACTTTCATTTGGCTTGTTGGGGTGCCCTTGATTGAGTACTTCCTTTTCAGGAAGTTCAAGTTCGTTTCTGCCATTGATGGGTTTCGCAAGATCCGGGCCGACCCGAATGCTCAGCTCTTGGATGTTAGGGATGAGAAGAGTTTGGGGATTTTGGGGGCTCCTAATTTGAGGATTTTGAATAAGGATGTGGTGCAGGTTGCTTATTCTGAGGAGGATGAAGATGGGTTTGTGAAGAAGGTGAAAAAATGCTTTGGAGATGGTGGTGATACTCTGGTTTTAGTAAGTTTTTTTGATGGTAATTCCATGAAAGTGGCTGAGTTGTTGTTCAAGAACGGCTTCAAGGAGGCTTATGCAATCAAGGATGGAGTTAGGGGCCAAAAAGGGTGGTTGGCAATACAGGAAAACCTATTACCACCTTCTGTCCACATGATCAAGAGGAAAAAAGCTAAAGCTTCCCAAAAGTTTGGGACCAATGGAGGAGTTGTCCAACAAAATAGAGACAGTGAGGCTGTTCCATTTTCGAAATCCTCCAGTGGAGAAGCCCAAGCATCACGCCTCCATGTCGATGCATCATCAGACACCGAGCCACAGTTGAAAACCCGGTTGAGATCATCGTCTCCTTATCCAAATTACCCAGATTTGAAACCACCATCTACTCCAACTCCCTCAAAGCCAGGGAAATGA

Protein sequence

METDQASSDKINLESILVSIDEFFTGCTFIWLVGVPLIEYFLFRKFKFVSAIDGFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGDGGDTLVLVSFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIKRKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSSSPYPNYPDLKPPSTPTPSKPGK

Homology

[Close]

BLAST of Sed0027176.1 vs. NCBI nr
Match: KAG7014541.1 (Rhodanese-like domain-containing protein 4A, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-106
Identity = 207/260 (79.62%), Postives = 228/260 (87.69%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQASSDKINLESILVSID+FF        GCTFIWLVG+PLI+Y+  RK+KF+SAID
Sbjct: 102 LETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYYFLRKYKFISAID 161

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FR+IR DPNAQLLD+RDEKSL  LG+PNLRILNKDVVQV YSEEDEDGFVKKVKK FGD
Sbjct: 162 AFRRIRDDPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKKGFGD 221

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
           G DTLV V   FDGNSMKVAELLFKNGFKEAYAIKDGVRG+KGW+AIQE+LLPPSVH+ +
Sbjct: 222 GADTLVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWMAIQESLLPPSVHISR 281

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKKAKAS+KFGTN GVVQQ+ D EAVP  KSS+GE Q S LHV+ASSDTE +LKTR RSS
Sbjct: 282 RKKAKASKKFGTN-GVVQQSGDKEAVPSLKSSNGEIQTSPLHVNASSDTESKLKTRSRSS 341

Query: 241 SPYPNYPDLKPPSTPTPSKP 253
           SPYPNYPDLKPPS+PTPSKP
Sbjct: 342 SPYPNYPDLKPPSSPTPSKP 360

[Close]

BLAST of Sed0027176.1 vs. NCBI nr
Match: XP_038896412.1 (rhodanese-like domain-containing protein 4A, chloroplastic [Benincasa hispida])

HSP 1 Score: 395.2 bits (1014), Expect = 4.3e-106
Identity = 208/262 (79.39%), Postives = 227/262 (86.64%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQASSDKINLESILVSID+FF        GCTFIWLVG+PLI+YF  RK+KF+SAID
Sbjct: 106 LETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYFFLRKYKFISAID 165

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FRKIR +PNAQLLD+RDEKSL  LG+PNLRILNKDVVQV YSEEDEDGFVKKVK  FGD
Sbjct: 166 AFRKIRDEPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKNSFGD 225

Query: 121 GGDTLV-LVSFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
             DTLV ++  FDGNSMKVAELL KNGFKEAYAIKDGVRG+KGWLAIQE+LLPPSVHM +
Sbjct: 226 VADTLVFILDNFDGNSMKVAELLVKNGFKEAYAIKDGVRGEKGWLAIQESLLPPSVHMNR 285

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKKAKASQK GTN GVVQQN D++AVP  KSS+GE Q SRLHV+ASS TE QLKTR R S
Sbjct: 286 RKKAKASQKLGTN-GVVQQNGDNKAVPSLKSSNGEIQTSRLHVNASSATETQLKTRSRPS 345

Query: 241 SPYPNYPDLKPPSTPTPSKPGK 255
           SPYPNYPDLKPPS+PTPSKPGK
Sbjct: 346 SPYPNYPDLKPPSSPTPSKPGK 366

[Close]

BLAST of Sed0027176.1 vs. NCBI nr
Match: XP_022991517.1 (rhodanese-like domain-containing protein 4A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 395.2 bits (1014), Expect = 4.3e-106
Identity = 207/260 (79.62%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQASSDKINLESILVSID+FF        GCTFIWLVG+PLI+Y+  RK+KF+SAID
Sbjct: 102 LETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYYFLRKYKFISAID 161

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FR+IR DPNAQLLD+RDEKSL  LG+PNLRILNKDVVQV YSEEDEDGFVKKVKK FGD
Sbjct: 162 AFRRIRDDPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKKGFGD 221

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
           G DT V V   FDGNSMKVAELLFKNGFKEAYAIKDGVRG+KGWLAIQE+LLPPSVH+ +
Sbjct: 222 GADTQVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWLAIQESLLPPSVHISR 281

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKKAKAS+KFGTN GVVQQ+ D EAVP  KSS+GE Q S LHV+ASSDTE +LKTR RSS
Sbjct: 282 RKKAKASKKFGTN-GVVQQSGDKEAVPSLKSSNGEIQTSPLHVNASSDTESKLKTRSRSS 341

Query: 241 SPYPNYPDLKPPSTPTPSKP 253
           SPYPNYPDLKPPS+PTPSKP
Sbjct: 342 SPYPNYPDLKPPSSPTPSKP 360

[Close]

BLAST of Sed0027176.1 vs. NCBI nr
Match: XP_022954032.1 (rhodanese-like domain-containing protein 4A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 392.9 bits (1008), Expect = 2.1e-105
Identity = 205/260 (78.85%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQASSDKINLESILVSID+FF        GCTFIWLVG+PLI+Y+  RK+KF+SAID
Sbjct: 102 LETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYYFLRKYKFISAID 161

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FR+IR DPNAQLLD+RDEKSL  LG+PNLRILNKDVVQV YSEEDEDGFVKKVKK FGD
Sbjct: 162 AFRRIRDDPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKKGFGD 221

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
           G DTLV V   FDGNSMKVAELLFKNGFKEAYAIKDGVRG+KGW+AIQE+LLPPSVH+ +
Sbjct: 222 GADTLVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWMAIQESLLPPSVHISR 281

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKKAKAS+KFGTN GVVQ++ D EAVP   SS+GE Q S LHV+ASSDTE +LKTR RSS
Sbjct: 282 RKKAKASKKFGTN-GVVQKSVDKEAVPSLNSSNGEIQTSPLHVNASSDTESKLKTRSRSS 341

Query: 241 SPYPNYPDLKPPSTPTPSKP 253
           SPYPNYPDLKPPS+PTPSKP
Sbjct: 342 SPYPNYPDLKPPSSPTPSKP 360

[Close]

BLAST of Sed0027176.1 vs. NCBI nr
Match: KAG6576020.1 (Rhodanese-like domain-containing protein 4A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.5 bits (1007), Expect = 2.8e-105
Identity = 207/263 (78.71%), Postives = 228/263 (86.69%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQASSDKINLESILVSID+FF        GCTFIWLVG+PLI+Y+  RK+KF+SAID
Sbjct: 102 LETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYYFLRKYKFISAID 161

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKC--- 120
            FR+IR DPNAQLLD+RDEKSL  LG+PNLRILNKDVVQV YSEEDEDGFVKKVKK    
Sbjct: 162 AFRRIRDDPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKKVKKG 221

Query: 121 FGDGGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVH 180
           FGDG DTLV V   FDGNSMKVAELLFKNGFKEAYAIKDGVRG+KGW+AIQE+LLPPSVH
Sbjct: 222 FGDGADTLVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWMAIQESLLPPSVH 281

Query: 181 MIKRKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRL 240
           + +RKKAKAS+KFGTN GVVQQ+ D EAVP  KSS+GE Q S LHV+ASSDTE +LKTR 
Sbjct: 282 ISRRKKAKASKKFGTN-GVVQQSGDKEAVPSLKSSNGEVQTSPLHVNASSDTESKLKTRS 341

Query: 241 RSSSPYPNYPDLKPPSTPTPSKP 253
           RSSSPYPNYPDLKPPS+PTPSKP
Sbjct: 342 RSSSPYPNYPDLKPPSSPTPSKP 363

[Close]

BLAST of Sed0027176.1 vs. ExPASy Swiss-Prot
Match: Q56XR7 (Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STR4A PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.6e-47
Identity = 101/181 (55.80%), Postives = 129/181 (71.27%), Query Frame = 0


Query: 7   SSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAIDGFRKIR 66
           SS KI+LESILV+ID FF        GCTF +LV  P + ++L RK+K +SA++ FRK++
Sbjct: 73  SSGKIDLESILVTIDNFFNKYPFFVAGCTFTYLVVYPAVMFYL-RKYKPISAMNAFRKLK 132

Query: 67  ADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGDGGDTLV 126
            + ++QLLD+RD K+L +L +PNL+ L K  VQV +SE DE+GF+ KVK  F D  +T+V
Sbjct: 133 NESDSQLLDIRDVKTLALLASPNLKFLGKSSVQVPFSENDEEGFLTKVKGSFSDAENTVV 192

Query: 127 LV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIKRKKAKA 180
            V   FDGNS KVAELL KNGFKEAY I+ G RG+ GWLAIQE LLPP VHM   K  K+
Sbjct: 193 CVLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGWLAIQEELLPPPVHMYTAKNVKS 252

[Close]

BLAST of Sed0027176.1 vs. ExPASy Swiss-Prot
Match: Q9M158 (Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STR4 PE=1 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 77/236 (32.63%), Postives = 114/236 (48.31%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFFTGCTFIWLVGVP------LIEYFLFRKFK---FVSA 60
           ++    +S   + + ++  I  F T    +   GV       ++   L +K K     SA
Sbjct: 76  LQQSMTTSSSFDSDGLIEGISNFVTDNPLVIAGGVAALAVPFVLSQVLNKKPKSWGVESA 135

Query: 61  IDGFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCF 120
            + + K+  D NAQLLD+R       +G+PN++ L K  V   Y+ ED+ GF+KK+   F
Sbjct: 136 KNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKF 195

Query: 121 GD-GGDTLVLVSFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHM 180
            D    TL ++  FDGNS  VAEL+  NGFK AYAIKDG  G +GWL    N   P +  
Sbjct: 196 KDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWL----NSSLPWIEP 255

Query: 181 IKRKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLK 227
            K      S    +  GV  ++ D  +V     + G A A+ L V A ++ E  L+
Sbjct: 256 KKTLSLDLSSLTDSISGVFGESSDGVSV-----ALGVAAAAGLSVFAFTEIETILQ 302

HSP 2 Score: 37.7 bits (86), Expect = 2.3e-01
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 207 EAQASRLHVDASSDTEPQLKTRLRSSSPYPNYPDLKPPSTPTPSKP 253
           EA  +   +   ++TE + K   R  SPY +YPDLKPPS+P PS+P
Sbjct: 421 EAAVAAQVITEPTETEAKPKPHSRPLSPYASYPDLKPPSSPMPSQP 466

[Close]

BLAST of Sed0027176.1 vs. ExPASy Swiss-Prot
Match: A2X345 (Protein THYLAKOID RHODANESE-LIKE, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=TROL PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 44  RKFKFVSAIDGFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGF 103
           + +  VSA   +R +  +P AQL+D+R        GAP+LR   K    V Y  ED++GF
Sbjct: 124 KPYGVVSAAAAYRALVEEPGAQLVDIRPPGDARQSGAPDLREAKKKAAAVPYDGEDKNGF 183

Query: 104 VKKVKKCFGD-GGDTLVLVSFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLA 159
           +KK+   F D    TLV++  FDGNS  VAEL+  NG+K A+A+KDG  G++GWL+
Sbjct: 184 LKKLSLRFKDPENTTLVILDKFDGNSELVAELVTANGYKAAFAVKDGAEGRRGWLS 239

HSP 2 Score: 38.9 bits (89), Expect = 1.0e-01
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 230 RSSSPYPNYPDLKPPSTPTPSKP 253
           R  SPYPNYPDLKPPS+P+PS P
Sbjct: 454 RPLSPYPNYPDLKPPSSPSPSAP 476

[Close]

BLAST of Sed0027176.1 vs. ExPASy Swiss-Prot
Match: Q6ETQ7 (Protein THYLAKOID RHODANESE-LIKE, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TROL PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 44  RKFKFVSAIDGFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGF 103
           + +  VSA   +R +  +P AQL+D+R        GAP+LR   K    V Y  ED++GF
Sbjct: 126 KPYGVVSAAAAYRALVEEPGAQLVDIRPPGDARQSGAPDLREAKKKAAAVPYDGEDKNGF 185

Query: 104 VKKVKKCFGD-GGDTLVLVSFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLA 159
           +KK+   F D    TLV++  FDGNS  VAEL+  NG+K A+A+KDG  G++GWL+
Sbjct: 186 LKKLSLRFKDPENTTLVILDKFDGNSELVAELVTANGYKAAFAVKDGAEGRRGWLS 241

HSP 2 Score: 38.9 bits (89), Expect = 1.0e-01
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 230 RSSSPYPNYPDLKPPSTPTPSKP 253
           R  SPYPNYPDLKPPS+P+PS P
Sbjct: 456 RPLSPYPNYPDLKPPSSPSPSAP 478

[Close]

BLAST of Sed0027176.1 vs. ExPASy TrEMBL
Match: A0A6J1JM16 (rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488109 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.1e-106
Identity = 207/260 (79.62%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQASSDKINLESILVSID+FF        GCTFIWLVG+PLI+Y+  RK+KF+SAID
Sbjct: 102 LETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYYFLRKYKFISAID 161

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FR+IR DPNAQLLD+RDEKSL  LG+PNLRILNKDVVQV YSEEDEDGFVKKVKK FGD
Sbjct: 162 AFRRIRDDPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKKGFGD 221

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
           G DT V V   FDGNSMKVAELLFKNGFKEAYAIKDGVRG+KGWLAIQE+LLPPSVH+ +
Sbjct: 222 GADTQVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWLAIQESLLPPSVHISR 281

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKKAKAS+KFGTN GVVQQ+ D EAVP  KSS+GE Q S LHV+ASSDTE +LKTR RSS
Sbjct: 282 RKKAKASKKFGTN-GVVQQSGDKEAVPSLKSSNGEIQTSPLHVNASSDTESKLKTRSRSS 341

Query: 241 SPYPNYPDLKPPSTPTPSKP 253
           SPYPNYPDLKPPS+PTPSKP
Sbjct: 342 SPYPNYPDLKPPSSPTPSKP 360

[Close]

BLAST of Sed0027176.1 vs. ExPASy TrEMBL
Match: A0A6J1GPW4 (rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456414 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.0e-105
Identity = 205/260 (78.85%), Postives = 227/260 (87.31%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQASSDKINLESILVSID+FF        GCTFIWLVG+PLI+Y+  RK+KF+SAID
Sbjct: 102 LETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYYFLRKYKFISAID 161

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FR+IR DPNAQLLD+RDEKSL  LG+PNLRILNKDVVQV YSEEDEDGFVKKVKK FGD
Sbjct: 162 AFRRIRDDPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKKGFGD 221

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
           G DTLV V   FDGNSMKVAELLFKNGFKEAYAIKDGVRG+KGW+AIQE+LLPPSVH+ +
Sbjct: 222 GADTLVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWMAIQESLLPPSVHISR 281

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKKAKAS+KFGTN GVVQ++ D EAVP   SS+GE Q S LHV+ASSDTE +LKTR RSS
Sbjct: 282 RKKAKASKKFGTN-GVVQKSVDKEAVPSLNSSNGEIQTSPLHVNASSDTESKLKTRSRSS 341

Query: 241 SPYPNYPDLKPPSTPTPSKP 253
           SPYPNYPDLKPPS+PTPSKP
Sbjct: 342 SPYPNYPDLKPPSSPTPSKP 360

[Close]

BLAST of Sed0027176.1 vs. ExPASy TrEMBL
Match: A0A5D3B9W6 (Rhodanese-like domain-containing protein 4A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00060 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.9e-100
Identity = 199/261 (76.25%), Postives = 220/261 (84.29%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETD ASSDKINLESILVSIDEFF        GCTFIWLV +PLI+Y+  RK+KF+SAID
Sbjct: 106 LETDLASSDKINLESILVSIDEFFNRYPFFVAGCTFIWLVVIPLIDYYFIRKYKFISAID 165

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FRKIR +PNAQLLDVR+EKSL +LG+PNLRILNKDVV+V YSEEDEDGFVKKVKK FGD
Sbjct: 166 AFRKIRDEPNAQLLDVREEKSLAVLGSPNLRILNKDVVRVVYSEEDEDGFVKKVKKSFGD 225

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
             DT+V V   FDGNSMKVAELL KNGFKEAYAIKDGVRG+KGWLAIQE+LLPPSVHM +
Sbjct: 226 CADTIVFVLDNFDGNSMKVAELLVKNGFKEAYAIKDGVRGEKGWLAIQESLLPPSVHMKR 285

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKK KASQK GTN GVVQQN D+E VP  KSS+ E Q S++HV+ASS  E QLKT  R S
Sbjct: 286 RKKGKASQKLGTN-GVVQQNGDNETVPSLKSSNREIQPSQVHVNASSPAESQLKTWSRPS 345

Query: 241 SPYPNYPDLKPPSTPTPSKPG 254
           SPYPNYPDLKPPS+PTPSKPG
Sbjct: 346 SPYPNYPDLKPPSSPTPSKPG 365

[Close]

BLAST of Sed0027176.1 vs. ExPASy TrEMBL
Match: A0A1S3C7N8 (rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497630 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.9e-100
Identity = 199/261 (76.25%), Postives = 220/261 (84.29%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETD ASSDKINLESILVSIDEFF        GCTFIWLV +PLI+Y+  RK+KF+SAID
Sbjct: 106 LETDLASSDKINLESILVSIDEFFNRYPFFVAGCTFIWLVVIPLIDYYFIRKYKFISAID 165

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            FRKIR +PNAQLLDVR+EKSL +LG+PNLRILNKDVV+V YSEEDEDGFVKKVKK FGD
Sbjct: 166 AFRKIRDEPNAQLLDVREEKSLAVLGSPNLRILNKDVVRVVYSEEDEDGFVKKVKKSFGD 225

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
             DT+V V   FDGNSMKVAELL KNGFKEAYAIKDGVRG+KGWLAIQE+LLPPSVHM +
Sbjct: 226 CADTIVFVLDNFDGNSMKVAELLVKNGFKEAYAIKDGVRGEKGWLAIQESLLPPSVHMKR 285

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKK KASQK GTN GVVQQN D+E VP  KSS+ E Q S++HV+ASS  E QLKT  R S
Sbjct: 286 RKKGKASQKLGTN-GVVQQNGDNETVPSLKSSNREIQPSQVHVNASSPAESQLKTWSRPS 345

Query: 241 SPYPNYPDLKPPSTPTPSKPG 254
           SPYPNYPDLKPPS+PTPSKPG
Sbjct: 346 SPYPNYPDLKPPSSPTPSKPG 365

[Close]

BLAST of Sed0027176.1 vs. ExPASy TrEMBL
Match: A0A6J1DZ92 (rhodanese-like domain-containing protein 4A, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025650 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 4.2e-99
Identity = 202/262 (77.10%), Postives = 223/262 (85.11%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAID 60
           +ETDQ SSDKINLESIL+SID FF        GCTFIWLV VPLIEY  FRK+KFVSAID
Sbjct: 77  LETDQ-SSDKINLESILLSIDGFFNRYPFFVAGCTFIWLVVVPLIEY-SFRKYKFVSAID 136

Query: 61  GFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGD 120
            F KIR DPNAQLLDVRD ++LG+LG+PNLRILNKDVVQV Y EEDE+GFVKKV + FGD
Sbjct: 137 AFCKIRDDPNAQLLDVRDGRNLGLLGSPNLRILNKDVVQVEYVEEDENGFVKKVVESFGD 196

Query: 121 GGDTLVLV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIK 180
             +T+V V   FDGNSMKVAELLFKNGFKEAYAIKDGVRG+KGWLAIQE LLPPSVHM K
Sbjct: 197 AANTVVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWLAIQERLLPPSVHMSK 256

Query: 181 RKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLKTRLRSS 240
           RKK KASQKFGTN GVV+Q  ++EAVP SK+S GE + SRLH+DASSDT+PQLKT+ RSS
Sbjct: 257 RKKTKASQKFGTN-GVVRQRGENEAVPSSKTSIGEIKTSRLHIDASSDTKPQLKTQSRSS 316

Query: 241 SPYPNYPDLKPPSTPTPSKPGK 255
           SPYPNYPDLKPPS+PTPSKP K
Sbjct: 317 SPYPNYPDLKPPSSPTPSKPEK 335

[Close]

BLAST of Sed0027176.1 vs. TAIR 10
Match: AT3G25480.1 (Rhodanese/Cell cycle control phosphatase superfamily protein )

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-48
Identity = 101/181 (55.80%), Postives = 129/181 (71.27%), Query Frame = 0


Query: 7   SSDKINLESILVSIDEFF-------TGCTFIWLVGVPLIEYFLFRKFKFVSAIDGFRKIR 66
           SS KI+LESILV+ID FF        GCTF +LV  P + ++L RK+K +SA++ FRK++
Sbjct: 73  SSGKIDLESILVTIDNFFNKYPFFVAGCTFTYLVVYPAVMFYL-RKYKPISAMNAFRKLK 132

Query: 67  ADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCFGDGGDTLV 126
            + ++QLLD+RD K+L +L +PNL+ L K  VQV +SE DE+GF+ KVK  F D  +T+V
Sbjct: 133 NESDSQLLDIRDVKTLALLASPNLKFLGKSSVQVPFSENDEEGFLTKVKGSFSDAENTVV 192

Query: 127 LV-SFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHMIKRKKAKA 180
            V   FDGNS KVAELL KNGFKEAY I+ G RG+ GWLAIQE LLPP VHM   K  K+
Sbjct: 193 CVLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGWLAIQEELLPPPVHMYTAKNVKS 252

[Close]

BLAST of Sed0027176.1 vs. TAIR 10
Match: AT4G01050.1 (thylakoid rhodanese-like )

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-20
Identity = 77/236 (32.63%), Postives = 114/236 (48.31%), Query Frame = 0


Query: 1   METDQASSDKINLESILVSIDEFFTGCTFIWLVGVP------LIEYFLFRKFK---FVSA 60
           ++    +S   + + ++  I  F T    +   GV       ++   L +K K     SA
Sbjct: 76  LQQSMTTSSSFDSDGLIEGISNFVTDNPLVIAGGVAALAVPFVLSQVLNKKPKSWGVESA 135

Query: 61  IDGFRKIRADPNAQLLDVRDEKSLGILGAPNLRILNKDVVQVAYSEEDEDGFVKKVKKCF 120
            + + K+  D NAQLLD+R       +G+PN++ L K  V   Y+ ED+ GF+KK+   F
Sbjct: 136 KNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKF 195

Query: 121 GD-GGDTLVLVSFFDGNSMKVAELLFKNGFKEAYAIKDGVRGQKGWLAIQENLLPPSVHM 180
            D    TL ++  FDGNS  VAEL+  NGFK AYAIKDG  G +GWL    N   P +  
Sbjct: 196 KDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWL----NSSLPWIEP 255

Query: 181 IKRKKAKASQKFGTNGGVVQQNRDSEAVPFSKSSSGEAQASRLHVDASSDTEPQLK 227
            K      S    +  GV  ++ D  +V     + G A A+ L V A ++ E  L+
Sbjct: 256 KKTLSLDLSSLTDSISGVFGESSDGVSV-----ALGVAAAAGLSVFAFTEIETILQ 302

HSP 2 Score: 37.7 bits (86), Expect = 1.6e-02
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 207 EAQASRLHVDASSDTEPQLKTRLRSSSPYPNYPDLKPPSTPTPSKP 253
           EA  +   +   ++TE + K   R  SPY +YPDLKPPS+P PS+P
Sbjct: 421 EAAVAAQVITEPTETEAKPKPHSRPLSPYASYPDLKPPSSPMPSQP 466

The following BLAST results are available for this feature:

BLAST of Sed0027176.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014541.1	1.5e-106	79.62	Rhodanese-like domain-containing protein 4A, chloroplastic, partial [Cucurbita a...	[more]
XP_038896412.1	4.3e-106	79.39	rhodanese-like domain-containing protein 4A, chloroplastic [Benincasa hispida]	[more]
XP_022991517.1	4.3e-106	79.62	rhodanese-like domain-containing protein 4A, chloroplastic [Cucurbita maxima]	[more]
XP_022954032.1	2.1e-105	78.85	rhodanese-like domain-containing protein 4A, chloroplastic [Cucurbita moschata]	[more]
KAG6576020.1	2.8e-105	78.71	Rhodanese-like domain-containing protein 4A, chloroplastic, partial [Cucurbita a...	[more]

BLAST of Sed0027176.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XR7	1.6e-47	55.80	Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thalia...	[more]
Q9M158	1.8e-19	32.63	Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thalian...	[more]
A2X345	1.8e-19	43.10	Protein THYLAKOID RHODANESE-LIKE, chloroplastic OS=Oryza sativa subsp. indica OX...	[more]
Q6ETQ7	1.8e-19	43.10	Protein THYLAKOID RHODANESE-LIKE, chloroplastic OS=Oryza sativa subsp. japonica ...	[more]

BLAST of Sed0027176.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM16	2.1e-106	79.62	rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucurbita maxima O...	[more]
A0A6J1GPW4	1.0e-105	78.85	rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucurbita moschata...	[more]
A0A5D3B9W6	2.9e-100	76.25	Rhodanese-like domain-containing protein 4A OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C7N8	2.9e-100	76.25	rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucumis melo OX=36...	[more]
A0A6J1DZ92	4.2e-99	77.10	rhodanese-like domain-containing protein 4A, chloroplastic OS=Momordica charanti...	[more]

BLAST of Sed0027176.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25480.1	1.1e-48	55.80	Rhodanese/Cell cycle control phosphatase superfamily protein	[more]
AT4G01050.1	1.3e-20	32.63	thylakoid rhodanese-like	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036873	Rhodanese-like domain superfamily	GENE3D	3.40.250.10		coord: 45..169 e-value: 5.8E-25 score: 89.6
IPR036873	Rhodanese-like domain superfamily	SUPERFAMILY	52821	Rhodanese/Cell cycle control phosphatase	coord: 32..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..234
None	No IPR available	PANTHER	PTHR47377:SF3	RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 4A, CHLOROPLASTIC	coord: 3..253
IPR044240	Rhodanese-like domain-containing protein STR4-like	PANTHER	PTHR47377	RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC	coord: 3..253
IPR001763	Rhodanese-like domain	PROSITE	PS50206	RHODANESE_3	coord: 60..165 score: 9.264856

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0027176	Sed0027176	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027176.1-exon	Sed0027176.1-exon-LG07:2190752..2190824	exon
Sed0027176.1-exon	Sed0027176.1-exon-LG07:2190845..2191139	exon
Sed0027176.1-exon	Sed0027176.1-exon-LG07:2191832..2191934	exon
Sed0027176.1-exon	Sed0027176.1-exon-LG07:2192705..2192944	exon
Sed0027176.1-exon	Sed0027176.1-exon-LG07:2193250..2193303	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027176.1-cds	Sed0027176.1-cds-LG07:2190752..2190824	CDS
Sed0027176.1-cds	Sed0027176.1-cds-LG07:2190845..2191139	CDS
Sed0027176.1-cds	Sed0027176.1-cds-LG07:2191832..2191934	CDS
Sed0027176.1-cds	Sed0027176.1-cds-LG07:2192705..2192944	CDS
Sed0027176.1-cds	Sed0027176.1-cds-LG07:2193250..2193303	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0027176.1	Sed0027176.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane