Sed0025991.1 (mRNA) Chayote v1

Overview


Name	Sed0025991.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Seed maturation protein PM41
Location	LG14: 6101727 .. 6102737 (+)
Sequence length	1011
RNA-Seq Expression	Sed0025991.1
Synteny	Sed0025991.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCTTACCCTATTGGTACATTGAGAATGTCAATTTATTTAACCCATCATTATTTCGCTAATTAATACTAATGGGTTACAAAAGGATTAAATTGTCCAAGATAAACAAATATTTCCCCTTTTTCCTATATATATCCATAAAAACATGAACTTGTAAATACATTTATGATGTTGTCAATTTATCCAACGTTTATCTATTGATAGAGACAAAGAAAGAGACCGACAGACGACGTGGCAGAAGAACGGTTGTTATGGCCTCCATGGCCGCCACGTTGAACCTTGCTGCCACGTGGAGCCTCTTTTCTCTTTAAAACCCAGCAATAAAATCACACACCAATTGACAATTTCTCAATTTAAATTTTGGATAGTGATTCTGATCATACTCATTTCCAGCAATAGACCGTTCACTTTTCAATGTCAGGAGCTCAGGGTGCGCAGCCGAAGGAGTCCTTCACGGCCACCACTTACGAGTCGGTGGCCGGCGGCGAGAACCGCACCAGGACCGACCTACGATCCCGGGAGGATGCTGGCATGATCCAGATTGATAAGATTCAGGATAAGGTTGACGATGCTGCCGGAAGAGGAGGCCCCGTGTTCGGTGCCGGGGAAGATGATAAGAAACAAGACCTTGGAGTAACCGGCACCGGATAGGCTTTATATCATTTTTACTCTTTGGTTTTTTTTGTGGAAGCTTCGTTTTTAAAAAAAATATCTGGTTTGTTTGGAGTTATAATAAATGTGAGATGATATATAAATTTGCTTGTTTAATTAGGAAATGCATGGTTGCTTGACCTTTCGTTTGATTTCATTGAGTTTTTATTGATTTTGTTGCTCTTTTTACAAGGGTTTCTTTTTTCTTTTTTTTTTTGTCATTTTATGAATTTGGTGATTTTTTTTTTTTGGCAAGCGGCCCTAGCAAAGGAGAAACAATCATTAATCGCACATCCTACCGTGCACAATTTCTAAAATAATTTATCTAAATAGGGGTGTTCATACATTTCCCTACAAATGG

mRNA sequence

ACGCTTACCCTATTGGTACATTGAGAATGTCAATTTATTTAACCCATCATTATTTCGCTAATTAATACTAATGGGTTACAAAAGGATTAAATTGTCCAAGATAAACAAATATTTCCCCTTTTTCCTATATATATCCATAAAAACATGAACTTGTAAATACATTTATGATGTTGTCAATTTATCCAACGTTTATCTATTGATAGAGACAAAGAAAGAGACCGACAGACGACGTGGCAGAAGAACGGTTGTTATGGCCTCCATGGCCGCCACGTTGAACCTTGCTGCCACGTGGAGCCTCTTTTCTCTTTAAAACCCAGCAATAAAATCACACACCAATTGACAATTTCTCAATTTAAATTTTGGATAGTGATTCTGATCATACTCATTTCCAGCAATAGACCGTTCACTTTTCAATGTCAGGAGCTCAGGGTGCGCAGCCGAAGGAGTCCTTCACGGCCACCACTTACGAGTCGGTGGCCGGCGGCGAGAACCGCACCAGGACCGACCTACGATCCCGGGAGGATGCTGGCATGATCCAGATTGATAAGATTCAGGATAAGGTTGACGATGCTGCCGGAAGAGGAGGCCCCGTGTTCGGTGCCGGGGAAGATGATAAGAAACAAGACCTTGGAGTAACCGGCACCGGATAGGCTTTATATCATTTTTACTCTTTGGTTTTTTTTGTGGAAGCTTCGTTTTTAAAAAAAATATCTGGTTTGTTTGGAGTTATAATAAATGTGAGATGATATATAAATTTGCTTGTTTAATTAGGAAATGCATGGTTGCTTGACCTTTCGTTTGATTTCATTGAGTTTTTATTGATTTTGTTGCTCTTTTTACAAGGGTTTCTTTTTTCTTTTTTTTTTTGTCATTTTATGAATTTGGTGATTTTTTTTTTTTGGCAAGCGGCCCTAGCAAAGGAGAAACAATCATTAATCGCACATCCTACCGTGCACAATTTCTAAAATAATTTATCTAAATAGGGGTGTTCATACATTTCCCTACAAATGG

Coding sequence (CDS)

ATGTCAGGAGCTCAGGGTGCGCAGCCGAAGGAGTCCTTCACGGCCACCACTTACGAGTCGGTGGCCGGCGGCGAGAACCGCACCAGGACCGACCTACGATCCCGGGAGGATGCTGGCATGATCCAGATTGATAAGATTCAGGATAAGGTTGACGATGCTGCCGGAAGAGGAGGCCCCGTGTTCGGTGCCGGGGAAGATGATAAGAAACAAGACCTTGGAGTAACCGGCACCGGATAG

Protein sequence

MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPVFGAGEDDKKQDLGVTGTG

Homology

[Close]

BLAST of Sed0025991.1 vs. NCBI nr
Match: XP_011653711.1 (uncharacterized protein LOC101209719 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPKESFTATTYESV+GGENRTRTD+RSREDAGMIQIDKIQDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+DDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of Sed0025991.1 vs. NCBI nr
Match: XP_008464243.1 (PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo] >KAA0063729.1 uncharacterized protein E6C27_scaffold1290G00100 [Cucumis melo var. makuwa] >TYJ97777.1 uncharacterized protein E5676_scaffold67599G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 9.0e-31
Identity = 71/78 (91.03%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPKESFTATTYESV+GGENRTRTD+RSREDAGMIQIDK+QDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG++DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of Sed0025991.1 vs. NCBI nr
Match: XP_038883613.1 (uncharacterized protein LOC120074530 [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPKESFTATTYESV GGENRT+TDLRSREDAGMIQIDK+QDKV DAAG+GGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVPGGENRTKTDLRSREDAGMIQIDKLQDKVQDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+DDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of Sed0025991.1 vs. NCBI nr
Match: XP_023544782.1 (uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 71/78 (91.03%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTDLRSREDAGMIQIDK+QDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+DDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Sed0025991.1 vs. NCBI nr
Match: XP_022949816.1 (uncharacterized protein LOC111453100 [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 71/78 (91.03%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTDLRSREDAGMIQIDK+QDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+DDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Sed0025991.1 vs. ExPASy TrEMBL
Match: A0A0A0KY41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-32
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPKESFTATTYESV+GGENRTRTD+RSREDAGMIQIDKIQDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+DDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of Sed0025991.1 vs. ExPASy TrEMBL
Match: A0A5D3BF74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67599G00010 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-31
Identity = 71/78 (91.03%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPKESFTATTYESV+GGENRTRTD+RSREDAGMIQIDK+QDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG++DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of Sed0025991.1 vs. ExPASy TrEMBL
Match: A0A1S3CL14 (uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-31
Identity = 71/78 (91.03%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPKESFTATTYESV+GGENRTRTD+RSREDAGMIQIDK+QDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG++DKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of Sed0025991.1 vs. ExPASy TrEMBL
Match: A0A6J1GD40 (uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC111453100 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.7e-31
Identity = 71/78 (91.03%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTDLRSREDAGMIQIDK+QDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+DDKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of Sed0025991.1 vs. ExPASy TrEMBL
Match: A0A6J1ITS5 (uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-30
Identity = 70/78 (89.74%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTDLRSREDAGMIQIDK+QDKV+DAAG+GGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+D+KKQDLGV+GTG
Sbjct: 61 FGAGKDEKKQDLGVSGTG 78

[Close]

BLAST of Sed0025991.1 vs. TAIR 10
Match: AT2G21820.1 (unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 121.3 bits (303), Expect = 3.4e-28
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVAGGENRTRTDLRSREDAGMIQIDKIQDKVDDAAGRGGPV 60
          MSGAQGA+P +S TATTYESV GG+N+T+ D+RS+ED G IQ+DK+QDKV DAAG GGPV
Sbjct: 1  MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 61 FGAGEDDKKQDLGVTGTG 79
          FGAG+DDKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

The following BLAST results are available for this feature:

BLAST of Sed0025991.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653711.1	1.8e-31	93.59	uncharacterized protein LOC101209719 [Cucumis sativus]	[more]
XP_008464243.1	9.0e-31	91.03	PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo] >KAA0063729.1 unc...	[more]
XP_038883613.1	1.2e-30	92.31	uncharacterized protein LOC120074530 [Benincasa hispida]	[more]
XP_023544782.1	2.0e-30	91.03	uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo]	[more]
XP_022949816.1	2.0e-30	91.03	uncharacterized protein LOC111453100 [Cucurbita moschata]	[more]

BLAST of Sed0025991.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025991.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY41	8.7e-32	93.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1	[more]
A0A5D3BF74	4.3e-31	91.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CL14	4.3e-31	91.03	uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=...	[more]
A0A6J1GD40	9.7e-31	91.03	uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]
A0A6J1ITS5	2.8e-30	89.74	uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345...	[more]

BLAST of Sed0025991.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21820.1	3.4e-28	76.92	unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	PANTHER	PTHR36012	OS01G0654400 PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR36012:SF2	OS01G0654400 PROTEIN	coord: 1..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0025991	Sed0025991	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0025991.1-five_prime_utr	Sed0025991.1-five_prime_utr-LG14:6101727..6102139	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0025991.1-exon	Sed0025991.1-exon-LG14:6101727..6102737	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0025991.1-cds	Sed0025991.1-cds-LG14:6102140..6102376	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0025991.1-three_prime_utr	Sed0025991.1-three_prime_utr-LG14:6102377..6102737	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0025991.1	Sed0025991.1-protein	polypeptide