Sed0024678.1 (mRNA) Chayote v1

Overview


Name	Sed0024678.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	CLAVATA3/ESR (CLE)-related protein 43
Location	LG03: 7472464 .. 7473279 (-)
Sequence length	816
RNA-Seq Expression	Sed0024678.1
Synteny	Sed0024678.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTCTTCCATTTCGTTTTCCCCCATTTTGTGGTAACTTCACCGGCAATGTACGGCGGCGCAACTCCTCCACGGCGGCGGAGATTTCTCTCTTCCTACTTGATCGTTATTTTGTTCATGTGGGTCATCTTCTGCAACCACCACCACCAAGCCGCCGCCGCCGCCAGACCCTTCCCGGAAAACAAAAATCCACATCAGAAAACCCATTTGGGCGGCGGCGGCGGCGGGGGAAGCAAGGGAAAGCTGCTCCGGAAGTATTTCAATGGAAGGAGTTTCGATTCGAAAGAGTTTGAACAGAACAAACGAACCGTCCCGAGCTGCCCGGATCCCCTCCACAACTAATGTACCCAAAATACCCCGTCATCGGAAAAAATCCGGGGGTATTTGGGGAATTTAAAGTTAGGTTCAGAAATGGAGGGTTCGTGATTTGTACAGAAAAAGAAGAAAATCTGAAATACTGCTTTTGGAGGACTTTGGCAGAGGAAGAGAAAGAAGACGAACTAAGAATGGCAGAGATGTGATTTTATTTCCAATCAGAGAATCATCTGTTTTTTTTTATATATATATATATATATTGTAAAAGAAGATAGAGTGTACGTAATTTTTTTTCTTTTCTTTTTTTTGTAGGAGTAATTTTGTTTGTCGTCTGCTCTGTCATGGAAAAAAGAAAAGGGGAAGCCTTTTTGGGTTGCTCAGTTTGTGTGTTGAACTTTGGTTTTGATGTTTCCCAGCTGCTATAATCTCTGTTCTTTTCTTCTATGCTTTTTTTTCTTGTGCTTGAATAATTTTGGGAGGACTTTCTCAGATATCATTCAAC

mRNA sequence

CTGTCTTCCATTTCGTTTTCCCCCATTTTGTGGTAACTTCACCGGCAATGTACGGCGGCGCAACTCCTCCACGGCGGCGGAGATTTCTCTCTTCCTACTTGATCGTTATTTTGTTCATGTGGGTCATCTTCTGCAACCACCACCACCAAGCCGCCGCCGCCGCCAGACCCTTCCCGGAAAACAAAAATCCACATCAGAAAACCCATTTGGGCGGCGGCGGCGGCGGGGGAAGCAAGGGAAAGCTGCTCCGGAAGTATTTCAATGGAAGGAGTTTCGATTCGAAAGAGTTTGAACAGAACAAACGAACCGTCCCGAGCTGCCCGGATCCCCTCCACAACTAATGTACCCAAAATACCCCGTCATCGGAAAAAATCCGGGGGTATTTGGGGAATTTAAAGTTAGGTTCAGAAATGGAGGGTTCGTGATTTGTACAGAAAAAGAAGAAAATCTGAAATACTGCTTTTGGAGGACTTTGGCAGAGGAAGAGAAAGAAGACGAACTAAGAATGGCAGAGATGTGATTTTATTTCCAATCAGAGAATCATCTGTTTTTTTTTATATATATATATATATATTGTAAAAGAAGATAGAGTGTACGTAATTTTTTTTCTTTTCTTTTTTTTGTAGGAGTAATTTTGTTTGTCGTCTGCTCTGTCATGGAAAAAAGAAAAGGGGAAGCCTTTTTGGGTTGCTCAGTTTGTGTGTTGAACTTTGGTTTTGATGTTTCCCAGCTGCTATAATCTCTGTTCTTTTCTTCTATGCTTTTTTTTCTTGTGCTTGAATAATTTTGGGAGGACTTTCTCAGATATCATTCAAC

Coding sequence (CDS)

ATGTACGGCGGCGCAACTCCTCCACGGCGGCGGAGATTTCTCTCTTCCTACTTGATCGTTATTTTGTTCATGTGGGTCATCTTCTGCAACCACCACCACCAAGCCGCCGCCGCCGCCAGACCCTTCCCGGAAAACAAAAATCCACATCAGAAAACCCATTTGGGCGGCGGCGGCGGCGGGGGAAGCAAGGGAAAGCTGCTCCGGAAGTATTTCAATGGAAGGAGTTTCGATTCGAAAGAGTTTGAACAGAACAAACGAACCGTCCCGAGCTGCCCGGATCCCCTCCACAACTAA

Protein sequence

MYGGATPPRRRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGGSKGKLLRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN

Homology

[Close]

BLAST of Sed0024678.1 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 3   GGATPP-RRRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGG 62
           GGATPP RRRRFLSS+ ++I F+WV+FC+H HQA A ARPFP N+ P Q       GG G
Sbjct: 10  GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSV----SGGAG 69

Query: 63  SKGKLLRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN 98
           SK KLLR YFNGRSF S+ F++ KRTVPSCPDPLHN
Sbjct: 70  SKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101

[Close]

BLAST of Sed0024678.1 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 3  GGATPP-RRRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGG 62
          GGATPP RRRRFLSS+ ++I F+WV+FC+H HQA A ARPFP N+ P Q       GG G
Sbjct: 4  GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSV----SGGAG 63

Query: 63 SKGKLLRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN 98
          SK KLLR YFNGRSF S+ F++ KRTVPSCPDPLHN
Sbjct: 64 SKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95

[Close]

BLAST of Sed0024678.1 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MYGGATPPRRRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGG 60
          M GG TP R+RRFLS+ L++ LF+WV+FC  H   A +AR FPEN  P ++TH+  GGGG
Sbjct: 1  MCGGVTPTRQRRFLSTLLVMALFIWVVFC--HQPGAVSARLFPENLIP-EETHV--GGGG 60

Query: 61 GSKGKLLRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN 98
          GSK KLLRKYFNG     + FE NKRTVPSCPDPLHN
Sbjct: 61 GSKEKLLRKYFNG----MRGFEDNKRTVPSCPDPLHN 88

[Close]

BLAST of Sed0024678.1 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-17
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 4  GATPPRRRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGGSK 63
          GATP RRRR LS + I++ F+WV+  N    A+A ARP  E++NP         G  GSK
Sbjct: 5  GATPSRRRRLLSYFFIILFFIWVVVGN--QAASAMARPLEESENPDM-------GAVGSK 64

Query: 64 GKLLRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN 98
               KYFNGRS  S+EFE+NKRTVPSCPDPLHN
Sbjct: 65 ----EKYFNGRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of Sed0024678.1 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 15  SSYLIVILFMWV----IFCNHHHQAAAAARPFPENKNPH-QKTHLGGGGGGGSKGKLLRK 74
           S++ I+IL +WV    + C+   +A+    P P    PH     L G     +K  LL+K
Sbjct: 16  SAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQK 75

Query: 75  YFNGRSFD----SKEFEQNKRTVPSCPDPLHN 98
           YFNGR+FD     + FE +KR +PSCPDPLHN
Sbjct: 76  YFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Sed0024678.1 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-17
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 4  GATPPRRRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGGSK 63
          GATP RRRR LS + I++ F+WV+  N    A+A ARP  E++NP         G  GSK
Sbjct: 5  GATPSRRRRLLSYFFIILFFIWVVVGN--QAASAMARPLEESENPDM-------GAVGSK 64

Query: 64 GKLLRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN 98
               KYFNGRS  S+EFE+NKRTVPSCPDPLHN
Sbjct: 65 ----EKYFNGRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of Sed0024678.1 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.1e-07
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 15  SSYLIVILFMWV----IFCNHHHQAAAAARPFPENKNPH-QKTHLGGGGGGGSKGKLLRK 74
           S++ I+IL +WV    + C+   +A+    P P    PH     L G     +K  LL+K
Sbjct: 16  SAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQK 75

Query: 75  YFNGRSFD----SKEFEQNKRTVPSCPDPLHN 98
           YFNGR+FD     + FE +KR +PSCPDPLHN
Sbjct: 76  YFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Sed0024678.1 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-06
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 17  YLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTH--LGGGGGGGSKGKLLRKYFNGR 76
           +LI +L +WV  C+     A A R FP+N  P +  H  +       +K  LLRK+FNGR
Sbjct: 22  FLIFMLQIWV--CS--DCKAGAIRIFPDNGMPSKLKHRNITTTDNKATKQDLLRKFFNGR 81

Query: 77  --SFDS--KEFEQNKRTVPSCPDPLHN 98
             SF+S  K FE+NKR VPSCPDPLHN
Sbjct: 82  ASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Sed0024678.1 vs. ExPASy TrEMBL
Match: A0A5N6Q3Y4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 9  RRRRFLSSYLIV--ILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGGSKGKL 68
          RR+ +L + LI+  +L +WV+  +H    +A   P P    P Q +          + +L
Sbjct: 7  RRKVYLVALLIMLSVLQIWVLSSDHCSIRSATPPPPPSPPPPPQDS------DAVKRLEL 66

Query: 69 LRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN 98
           RK+FNGR F  K F++NKR VPSCPDPLHN
Sbjct: 67 HRKFFNGR-FPDKSFQENKRIVPSCPDPLHN 90

[Close]

BLAST of Sed0024678.1 vs. ExPASy TrEMBL
Match: A0A2U1QJK5 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA022030 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 9  RRRRFLSSYLIV--ILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGGSKGKL 68
          +R+ +L + LI+  +L +W++  +H    A    P  +   P Q +          K KL
Sbjct: 6  KRKVYLVTALIMFSVLQIWILSGDHCSIRATFTSPPSQPPPPPQDS------DAVKKAKL 65

Query: 69 LRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN 98
           RKYF+GR F  K F++NKR VPSCPDPLHN
Sbjct: 66 HRKYFSGR-FPHKSFQENKRIVPSCPDPLHN 89

[Close]

BLAST of Sed0024678.1 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 30/94 (31.91%), Postives = 42/94 (44.68%), Query Frame = 0


Query: 10 RRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGGSKGKLLRK 69
          R    ++ L+VIL  +++     +    A R FPE              G   +  L++K
Sbjct: 8  RSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETP----------ASGKRQEEDLMKK 67

Query: 70 YFNG------RSFDSKEFEQNKRTVPSCPDPLHN 98
          YF         SF  K   ++KR VPSCPDPLHN
Sbjct: 68 YFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of Sed0024678.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579278.1	2.3e-28	66.67	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7016789.1	2.3e-28	66.67	hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601785.1	1.5e-22	62.89	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAA0063931.1	7.0e-17	55.32	putative Clavata3/esr-related 43 [Cucumis melo var. makuwa]	[more]
KGN52083.1	1.5e-06	41.30	hypothetical protein Csa_008231 [Cucumis sativus]	[more]

BLAST of Sed0024678.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024678.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDX3	3.4e-17	55.32	Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0KR66	7.1e-07	41.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A2C9VNI0	6.0e-06	48.28	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A5N6Q3Y4	1.0e-05	40.66	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1	[more]
A0A2U1QJK5	3.9e-05	39.56	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA022030 PE=4 SV=1	[more]

BLAST of Sed0024678.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	1.9e-04	31.91	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..86
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 9..97
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 9..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0024678	Sed0024678	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024678.1-exon	Sed0024678.1-exon-LG03:7472464..7473279	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024678.1-three_prime_utr	Sed0024678.1-three_prime_utr-LG03:7472464..7472938	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024678.1-cds	Sed0024678.1-cds-LG03:7472939..7473232	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024678.1-five_prime_utr	Sed0024678.1-five_prime_utr-LG03:7473233..7473279	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0024678.1	Sed0024678.1-protein	polypeptide