Sed0024678 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGTCTTCCATTTCGTTTTCCCCCATTTTGTGGTAACTTCACCGGCAATGTACGGCGGCGCAACTCCTCCACGGCGGCGGAGATTTCTCTCTTCCTACTTGATCGTTATTTTGTTCATGTGGGTCATCTTCTGCAACCACCACCACCAAGCCGCCGCCGCCGCCAGACCCTTCCCGGAAAACAAAAATCCACATCAGAAAACCCATTTGGGCGGCGGCGGCGGCGGGGGAAGCAAGGGAAAGCTGCTCCGGAAGTATTTCAATGGAAGGAGTTTCGATTCGAAAGAGTTTGAACAGAACAAACGAACCGTCCCGAGCTGCCCGGATCCCCTCCACAACTAATGTACCCAAAATACCCCGTCATCGGAAAAAATCCGGGGGTATTTGGGGAATTTAAAGTTAGGTTCAGAAATGGAGGGTTCGTGATTTGTACAGAAAAAGAAGAAAATCTGAAATACTGCTTTTGGAGGACTTTGGCAGAGGAAGAGAAAGAAGACGAACTAAGAATGGCAGAGATGTGATTTTATTTCCAATCAGAGAATCATCTGTTTTTTTTTATATATATATATATATATTGTAAAAGAAGATAGAGTGTACGTAATTTTTTTTCTTTTCTTTTTTTTGTAGGAGTAATTTTGTTTGTCGTCTGCTCTGTCATGGAAAAAAGAAAAGGGGAAGCCTTTTTGGGTTGCTCAGTTTGTGTGTTGAACTTTGGTTTTGATGTTTCCCAGCTGCTATAATCTCTGTTCTTTTCTTCTATGCTTTTTTTTCTTGTGCTTGAATAATTTTGGGAGGACTTTCTCAGATATCATTCAAC CTGTCTTCCATTTCGTTTTCCCCCATTTTGTGGTAACTTCACCGGCAATGTACGGCGGCGCAACTCCTCCACGGCGGCGGAGATTTCTCTCTTCCTACTTGATCGTTATTTTGTTCATGTGGGTCATCTTCTGCAACCACCACCACCAAGCCGCCGCCGCCGCCAGACCCTTCCCGGAAAACAAAAATCCACATCAGAAAACCCATTTGGGCGGCGGCGGCGGCGGGGGAAGCAAGGGAAAGCTGCTCCGGAAGTATTTCAATGGAAGGAGTTTCGATTCGAAAGAGTTTGAACAGAACAAACGAACCGTCCCGAGCTGCCCGGATCCCCTCCACAACTAATGTACCCAAAATACCCCGTCATCGGAAAAAATCCGGGGGTATTTGGGGAATTTAAAGTTAGGTTCAGAAATGGAGGGTTCGTGATTTGTACAGAAAAAGAAGAAAATCTGAAATACTGCTTTTGGAGGACTTTGGCAGAGGAAGAGAAAGAAGACGAACTAAGAATGGCAGAGATGTGATTTTATTTCCAATCAGAGAATCATCTGTTTTTTTTTATATATATATATATATATTGTAAAAGAAGATAGAGTGTACGTAATTTTTTTTCTTTTCTTTTTTTTGTAGGAGTAATTTTGTTTGTCGTCTGCTCTGTCATGGAAAAAAGAAAAGGGGAAGCCTTTTTGGGTTGCTCAGTTTGTGTGTTGAACTTTGGTTTTGATGTTTCCCAGCTGCTATAATCTCTGTTCTTTTCTTCTATGCTTTTTTTTCTTGTGCTTGAATAATTTTGGGAGGACTTTCTCAGATATCATTCAAC ATGTACGGCGGCGCAACTCCTCCACGGCGGCGGAGATTTCTCTCTTCCTACTTGATCGTTATTTTGTTCATGTGGGTCATCTTCTGCAACCACCACCACCAAGCCGCCGCCGCCGCCAGACCCTTCCCGGAAAACAAAAATCCACATCAGAAAACCCATTTGGGCGGCGGCGGCGGCGGGGGAAGCAAGGGAAAGCTGCTCCGGAAGTATTTCAATGGAAGGAGTTTCGATTCGAAAGAGTTTGAACAGAACAAACGAACCGTCCCGAGCTGCCCGGATCCCCTCCACAACTAA MYGGATPPRRRRFLSSYLIVILFMWVIFCNHHHQAAAAARPFPENKNPHQKTHLGGGGGGGSKGKLLRKYFNGRSFDSKEFEQNKRTVPSCPDPLHN Homology
BLAST of Sed0024678 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28 Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 0
BLAST of Sed0024678 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28 Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 0
BLAST of Sed0024678 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22 Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 0
BLAST of Sed0024678 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa]) HSP 1 Score: 97.4 bits (241), Expect = 7.0e-17 Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 0
BLAST of Sed0024678 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus]) HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06 Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0
BLAST of Sed0024678 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 3.4e-17 Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 0
BLAST of Sed0024678 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 7.1e-07 Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0
BLAST of Sed0024678 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 6.0e-06 Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 0
BLAST of Sed0024678 vs. ExPASy TrEMBL
Match: A0A5N6Q3Y4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05 Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 0
BLAST of Sed0024678 vs. ExPASy TrEMBL
Match: A0A2U1QJK5 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA022030 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05 Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0
BLAST of Sed0024678 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 ) HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04 Identity = 30/94 (31.91%), Postives = 42/94 (44.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|