Sed0023913.6 (mRNA) Chayote v1

Overview
NameSed0023913.6
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionZinc finger matrin-type protein 2
LocationLG03: 13567693 .. 13570350 (+)
Sequence length2435
RNA-Seq ExpressionSed0023913.6
SyntenySed0023913.6
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCTCCATGAATCTGTCCAAGATGAGCTTTGATTTGTGAGTGTTTATGATTCTGGAAGTAAGAACAACTTCAGTTGTGCTAACAGATTTTAAACAGTAGTTACTCTAATGGAAAGGATCTTTTGACTTTGTTTGCAGCTTTTCTATTTGATTATGGAAATTGTTTTGAGAACTATGATTGAATAACTTGAAAAGAAATCTAGGATTTTGGAAGCGTTATTAGCTGTCCAAAGGAGTTTCAGGCAACTTTCAGGAGAATTTTTATCCAAATTAATAGAAGTAATGTGCTGAAAAACACAGTCATCTAAATATATAGGATCGTTTTTGTTCTAAAAATGTAGAATCTGCATTTTCTTTTTATTTATTGCTTGTTTATTACTTGGGTATTGAAGAACATACTGGGCCAACCCACTGATCTTTGAAGAGGTTCCACACCCTCAAAACCAGATCAGAGAGACGCGGTTTTAGATTCTTGAATTTTTCTCTTGAGGGCACGAACATGAACCCTAAGGGTATGTTTGGGGAGCGTTTATGCAAACGTGGTTTGAGTTATCTAAGCACGGCTAGAACCTCGCAAACCCCACGGGGAAGATTGGAAGAATGTTTTATCAGATAAATGATTTTTGGTGTTTGTTGTATATATGGTTAGAGTAAGTGTAATATAACACTCTTTATTACAATAACATGTACCATAAACACCGATTCTTATAACTTTTGCATCTTAAATACTGATTATTATAATTTTTGTACTATAAATATTGTTTATAATGTTAATACAATTTGCACTTCAAACACAATTTTTCCACAACTTCTAGTATAATAATACGGGGTTAAAATACACTTTATCATAATTTACTTATAATAACTCTATTGTGTTTCAATCACATCCTAAACTTTAGAGAATATTTACAAATGTCACAAGTCCTAAACTCCATCCATAGCAATCATTGGGTAGGAAGGCCACTTCAAAAAAAACAAACAAATTGGGAACAGCCTCTTAGATTTCCTCCTACCTTTTCCACTTTAGCCAAGGAGAATTACAAGTGCATCCAAGAAAAAAAAGGGTTGTAATGTGTTGTAGTAGAATCTTGTGCCTTTTATGGTTGTGCAATGATGAATGATTTATGAGTAGCTTTTATGGAGGTTGTGCTGAAAAAACCCTAAACCAAAATGTGATAATGATGATGAGAGAGAATGTTGAATTGGTTAGTGTGAAATGATATCAATTATCTGACTATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTAACTTTATGTTCTTTTGGTGCTATTCTTATTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGTAAATTTCTTTTCATTCTTCTTTCTTACATACTATACATTCAATAGTTTAGAGGGTGCAGCTAGCCTATAATGTGGTGACCACATCAAATAATTTTCAGTAAATGGGGACCCTACTCTCCTTCGTACTGTGCTCGCCTGCCCCGTAATTCACGGGGCGAGTTTGAACTATGCAGGAAGAAGAAGAAAGGAAGCGTGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGGTTAGTACTATGATCTCACCATTTCGGTTTCGTCATGTCATTGAAGGAGAGGATCATATTTACGCCTTTGTTTTCCTCTTGTGTAGAAAGAGAAGGCTGTAGAAGAAGAGCCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATTTGGGGGCTTTCGTTCATCCAAGAAGTGACCATTACAGATTCATCTTCTTCAACTTGAGGTTTGAGCTCTGCCCTTGTGATCCTTGTGGAGTTATTTATTATGAACTGATGCACGAGGGGTCTAAACGTGGGCTTCCCGGCCTCTAATAAGACTGTTTGTTGTATGGATTGAATATTTCAGTATGACCAACGAAGAATTGGTCAAGCTTAGCATGTCACGACCTTACTCGAACAAGATTTTTTCTGAATTTGTATAATTGTATTCTTAAGTTCTTTAGGGGGGTTTATCATGTTTTTTTATGTCATATATTTAATTCATATGCTATACCATGTTTTTTCATGTCTGTGTTCGGATCGGATCATCTTACACATGCATCGACAATTCTCACAAAACAATTGGATGAAATTGGATAATCCTATTATATGGTGAGGATTCAAAGGATCACATCTTTAACCTGTGTGTTTGGGCAGAAGCCTTTTGGAGTTATGTATGTGGTTTTTTTTTAATGGTCCCTTGTTAGGCTAAAAGATCTTCCAACTCTTCTTTGCTGTGTGTGATTCAGGGACACCCCAAAAGAGACTTTGTGGCTAAATTTTGTTTAATCTTTGTTTTGGAAGTGGTGGTTGGAATGAAACAATAGGATCTTCAACACCAAGCATCTTTTTGCATCATGATCTCATGGGATCCACCATTCAGACAAACAGAGTTGTATTTGAGTCATCATCTCCCCTTTTTTGTATTTATCACTTATCTTTTCTTTTCTCTCATTGGCATCATCTTCTATAAGATAATATGATCTTTTGTACTATTTTCACAAATCAATGAAGAAAATTATATGGTTGTCAAGAAAATTCGCA

mRNA sequence

TTTTTCTCCATGAATCTGTCCAAGATGAGCTTTGATTTGTGAGTGTTTATGATTCTGGAAGTAAGAACAACTTCAGTTGTGCTAACAGATTTTAAACAGTAGTTACTCTAATGGAAAGGATCTTTTGACTTTGTTTGCAGCTTTTCTATTTGATTATGGAAATTGTTTTGAGAACTATGATTGAATAACTTGAAAAGAAATCTAGGATTTTGGAAGCGTTATTAGCTGTCCAAAGGAGTTTCAGGCAACTTTCAGGAGAATTTTTATCCAAATTAATAGAAGTAATGTGCTGAAAAACACAGTCATCTAAATATATAGGATCGTTTTTGTTCTAAAAATGTAGAATCTGCATTTTCTTTTTATTTATTGCTTGTTTATTACTTGGGTATTGAAGAACATACTGGGCCAACCCACTGATCTTTGAAGAGGTTCCACACCCTCAAAACCAGATCAGAGAGACGCGGTTTTAGATTCTTGAATTTTTCTCTTGAGGGCACGAACATGAACCCTAAGGGTATGTTTGGGGAGCGTTTATGCAAACGTGGTTTGAGTTATCTAAGCACGGCTAGAACCTCGCAAACCCCACGGGGAAGATTGGAAGAATGTTTTATCAGATAAATGATTTTTGGTGTTTGTTGTATATATGGTTAGAGTAAGTGTAATATAACACTCTTTATTACAATAACATGTACCATAAACACCGATTCTTATAACTTTTGCATCTTAAATACTGATTATTATAATTTTTGTACTATAAATATTGTTTATAATGTTAATACAATTTGCACTTCAAACACAATTTTTCCACAACTTCTAGTATAATAATACGGGGTTAAAATACACTTTATCATAATTTACTTATAATAACTCTATTGTGTTTCAATCACATCCTAAACTTTAGAGAATATTTACAAATGTCACAAGTCCTAAACTCCATCCATAGCAATCATTGGGTAGGAAGGCCACTTCAAAAAAAACAAACAAATTGGGAACAGCCTCTTAGATTTCCTCCTACCTTTTCCACTTTAGCCAAGGAGAATTACAAGTGCATCCAAGAAAAAAAAGGGTTGTAATGTGTTGTAGTAGAATCTTGTGCCTTTTATGGTTGTGCAATGATGAATGATTTATGAGTAGCTTTTATGGAGGTTGTGCTGAAAAAACCCTAAACCAAAATGTGATAATGATGATGAGAGAGAATGTTGAATTGGTTAGTGTGAAATGATATCAATTATCTGACTATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTAACTTTATGTTCTTTTGGTGCTATTCTTATTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGTAAATTTCTTTTCATTCTTCTTTCTTACATACTATACATTCAATAGTTTAGAGGGTGCAGCTAGCCTATAATGTGGTGACCACATCAAATAATTTTCAGTAAATGGGGACCCTACTCTCCTTCGTACTGTGCTCGCCTGCCCCGTAATTCACGGGGCGAGTTTGAACTATGCAGGAAGAAGAAGAAAGGAAGCGTGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGTAGAAGAAGAGCCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATTTGGGGGCTTTCGTTCATCCAAGAAGTGACCATTACAGATTCATCTTCTTCAACTTGAGGTTTGAGCTCTGCCCTTGTGATCCTTGTGGAGTTATTTATTATGAACTGATGCACGAGGGGTCTAAACGTGGGCTTCCCGGCCTCTAATAAGACTGTTTGTTGTATGGATTGAATATTTCAGTATGACCAACGAAGAATTGGTCAAGCTTAGCATGTCACGACCTTACTCGAACAAGATTTTTTCTGAATTTGTATAATTGTATTCTTAAGTTCTTTAGGGGGGTTTATCATGTTTTTTTATGTCATATATTTAATTCATATGCTATACCATGTTTTTTCATGTCTGTGTTCGGATCGGATCATCTTACACATGCATCGACAATTCTCACAAAACAATTGGATGAAATTGGATAATCCTATTATATGGGACACCCCAAAAGAGACTTTGTGGCTAAATTTTGTTTAATCTTTGTTTTGGAAGTGGTGGTTGGAATGAAACAATAGGATCTTCAACACCAAGCATCTTTTTGCATCATGATCTCATGGGATCCACCATTCAGACAAACAGAGTTGTATTTGAGTCATCATCTCCCCTTTTTTGTATTTATCACTTATCTTTTCTTTTCTCTCATTGGCATCATCTTCTATAAGATAATATGATCTTTTGTACTATTTTCACAAATCAATGAAGAAAATTATATGGTTGTCAAGAAAATTCGCA

Coding sequence (CDS)

ATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTAACTTTATGTTCTTTTGGTGCTATTCTTATTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGTAAATTTCTTTTCATTCTTCTTTCTTACATACTATACATTCAATAGTTTAGAGGGTGCAGCTAGCCTATAA

Protein sequence

MAHMAMRHCCVRAAERSHFNPQTNCKSNFMFFWCYSYFPWLSQPFAGSLTSLPVDAYAWRRFQVNFFSFFFLTYYTFNSLEGAASL
Homology
The following BLAST results are available for this feature:
BLAST of Sed0023913.6 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0023913.6 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0023913.6 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0023913.6 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0023913Sed0023913gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0023913.6-five_prime_utrSed0023913.6-five_prime_utr-LG03:13567693..13568930five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0023913.6-exonSed0023913.6-exon-LG03:13567693..13569345exon
Sed0023913.6-exonSed0023913.6-exon-LG03:13569432..13569918exon
Sed0023913.6-exonSed0023913.6-exon-LG03:13570056..13570350exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0023913.6-cdsSed0023913.6-cds-LG03:13568931..13569191CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0023913.6-three_prime_utrSed0023913.6-three_prime_utr-LG03:13569192..13569345three_prime_UTR
Sed0023913.6-three_prime_utrSed0023913.6-three_prime_utr-LG03:13569432..13569918three_prime_UTR
Sed0023913.6-three_prime_utrSed0023913.6-three_prime_utr-LG03:13570056..13570350three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0023913.6Sed0023913.6-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding