Sed0023913 (gene) Chayote v1

Overview
NameSed0023913
Typegene
OrganismSechium edule (Chayote v1)
DescriptionZinc finger matrin-type protein 2
LocationLG03: 13567693 .. 13570350 (+)
RNA-Seq ExpressionSed0023913
SyntenySed0023913
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCTCCATGAATCTGTCCAAGATGAGCTTTGATTTGTGAGTGTTTATGATTCTGGAAGTAAGAACAACTTCAGTTGTGCTAACAGATTTTAAACAGTAGTTACTCTAATGGAAAGGATCTTTTGACTTTGTTTGCAGCTTTTCTATTTGATTATGGAAATTGTTTTGAGAACTATGATTGAATAACTTGAAAAGAAATCTAGGATTTTGGAAGCGTTATTAGCTGTCCAAAGGAGTTTCAGGCAACTTTCAGGAGAATTTTTATCCAAATTAATAGAAGTAATGTGCTGAAAAACACAGTCATCTAAATATATAGGATCGTTTTTGTTCTAAAAATGTAGAATCTGCATTTTCTTTTTATTTATTGCTTGTTTATTACTTGGGTATTGAAGAACATACTGGGCCAACCCACTGATCTTTGAAGAGGTTCCACACCCTCAAAACCAGATCAGAGAGACGCGGTTTTAGATTCTTGAATTTTTCTCTTGAGGGCACGAACATGAACCCTAAGGGTATGTTTGGGGAGCGTTTATGCAAACGTGGTTTGAGTTATCTAAGCACGGCTAGAACCTCGCAAACCCCACGGGGAAGATTGGAAGAATGTTTTATCAGATAAATGATTTTTGGTGTTTGTTGTATATATGGTTAGAGTAAGTGTAATATAACACTCTTTATTACAATAACATGTACCATAAACACCGATTCTTATAACTTTTGCATCTTAAATACTGATTATTATAATTTTTGTACTATAAATATTGTTTATAATGTTAATACAATTTGCACTTCAAACACAATTTTTCCACAACTTCTAGTATAATAATACGGGGTTAAAATACACTTTATCATAATTTACTTATAATAACTCTATTGTGTTTCAATCACATCCTAAACTTTAGAGAATATTTACAAATGTCACAAGTCCTAAACTCCATCCATAGCAATCATTGGGTAGGAAGGCCACTTCAAAAAAAACAAACAAATTGGGAACAGCCTCTTAGATTTCCTCCTACCTTTTCCACTTTAGCCAAGGAGAATTACAAGTGCATCCAAGAAAAAAAAGGGTTGTAATGTGTTGTAGTAGAATCTTGTGCCTTTTATGGTTGTGCAATGATGAATGATTTATGAGTAGCTTTTATGGAGGTTGTGCTGAAAAAACCCTAAACCAAAATGTGATAATGATGATGAGAGAGAATGTTGAATTGGTTAGTGTGAAATGATATCAATTATCTGACTATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTAACTTTATGTTCTTTTGGTGCTATTCTTATTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGTAAATTTCTTTTCATTCTTCTTTCTTACATACTATACATTCAATAGTTTAGAGGGTGCAGCTAGCCTATAATGTGGTGACCACATCAAATAATTTTCAGTAAATGGGGACCCTACTCTCCTTCGTACTGTGCTCGCCTGCCCCGTAATTCACGGGGCGAGTTTGAACTATGCAGGAAGAAGAAGAAAGGAAGCGTGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGGTTAGTACTATGATCTCACCATTTCGGTTTCGTCATGTCATTGAAGGAGAGGATCATATTTACGCCTTTGTTTTCCTCTTGTGTAGAAAGAGAAGGCTGTAGAAGAAGAGCCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATTTGGGGGCTTTCGTTCATCCAAGAAGTGACCATTACAGATTCATCTTCTTCAACTTGAGGTTTGAGCTCTGCCCTTGTGATCCTTGTGGAGTTATTTATTATGAACTGATGCACGAGGGGTCTAAACGTGGGCTTCCCGGCCTCTAATAAGACTGTTTGTTGTATGGATTGAATATTTCAGTATGACCAACGAAGAATTGGTCAAGCTTAGCATGTCACGACCTTACTCGAACAAGATTTTTTCTGAATTTGTATAATTGTATTCTTAAGTTCTTTAGGGGGGTTTATCATGTTTTTTTATGTCATATATTTAATTCATATGCTATACCATGTTTTTTCATGTCTGTGTTCGGATCGGATCATCTTACACATGCATCGACAATTCTCACAAAACAATTGGATGAAATTGGATAATCCTATTATATGGTGAGGATTCAAAGGATCACATCTTTAACCTGTGTGTTTGGGCAGAAGCCTTTTGGAGTTATGTATGTGGTTTTTTTTTAATGGTCCCTTGTTAGGCTAAAAGATCTTCCAACTCTTCTTTGCTGTGTGTGATTCAGGGACACCCCAAAAGAGACTTTGTGGCTAAATTTTGTTTAATCTTTGTTTTGGAAGTGGTGGTTGGAATGAAACAATAGGATCTTCAACACCAAGCATCTTTTTGCATCATGATCTCATGGGATCCACCATTCAGACAAACAGAGTTGTATTTGAGTCATCATCTCCCCTTTTTTGTATTTATCACTTATCTTTTCTTTTCTCTCATTGGCATCATCTTCTATAAGATAATATGATCTTTTGTACTATTTTCACAAATCAATGAAGAAAATTATATGGTTGTCAAGAAAATTCGCA

mRNA sequence

TTTTTCTCCATGAATCTGTCCAAGATGAGCTTTGATTTGTGAGTGTTTATGATTCTGGAAGTAAGAACAACTTCAGTTGTGCTAACAGATTTTAAACAGTAGTTACTCTAATGGAAAGGATCTTTTGACTTTGTTTGCAGCTTTTCTATTTGATTATGGAAATTGTTTTGAGAACTATGATTGAATAACTTGAAAAGAAATCTAGGATTTTGGAAGCGTTATTAGCTGTCCAAAGGAGTTTCAGGCAACTTTCAGGAGAATTTTTATCCAAATTAATAGAAGTAATGTGCTGAAAAACACAGTCATCTAAATATATAGGATCGTTTTTGTTCTAAAAATGTAGAATCTGCATTTTCTTTTTATTTATTGCTTGTTTATTACTTGGGTATTGAAGAACATACTGGGCCAACCCACTGATCTTTGAAGAGGTTCCACACCCTCAAAACCAGATCAGAGAGACGCGGTTTTAGATTCTTGAATTTTTCTCTTGAGGGCACGAACATGAACCCTAAGGGTATGTTTGGGGAGCGTTTATGCAAACGTGGTTTGAGTTATCTAAGCACGGCTAGAACCTCGCAAACCCCACGGGGAAGATTGGAAGAATGTTTTATCAGATAAATGATTTTTGGTGTTTGTTGTATATATGGTTAGAGTAAGTGTAATATAACACTCTTTATTACAATAACATGTACCATAAACACCGATTCTTATAACTTTTGCATCTTAAATACTGATTATTATAATTTTTGTACTATAAATATTGTTTATAATGTTAATACAATTTGCACTTCAAACACAATTTTTCCACAACTTCTAGTATAATAATACGGGGTTAAAATACACTTTATCATAATTTACTTATAATAACTCTATTGTGTTTCAATCACATCCTAAACTTTAGAGAATATTTACAAATGTCACAAGTCCTAAACTCCATCCATAGCAATCATTGGGTAGGAAGGCCACTTCAAAAAAAACAAACAAATTGGGAACAGCCTCTTAGATTTCCTCCTACCTTTTCCACTTTAGCCAAGGAGAATTACAAGTGCATCCAAGAAAAAAAAGGGTTGTAATGTGTTGTAGTAGAATCTTGTGCCTTTTATGGTTGTGCAATGATGAATGATTTATGAGTAGCTTTTATGGAGGTTGTGCTGAAAAAACCCTAAACCAAAATGTGATAATGATGATGAGAGAGAATGTTGAATTGGTTAGTGTGAAATGATATCAATTATCTGACTATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTAACTTTATGTTCTTTTGGTGCTATTCTTATTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGAAGAAGAAGAAAGGAAGCGTGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGTAGAAGAAGAGCCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATTTGGGGGCTTTCGTTCATCCAAGAAGTGACCATTACAGATTCATCTTCTTCAACTTGAGGTTTGAGCTCTGCCCTTGTGATCCTTGTGGAGTTATTTATTATGAACTGATGCACGAGGGGTCTAAACGTGGGCTTCCCGGCCTCTAATAAGACTGTTTGTTGTATGGATTGAATATTTCAGTATGACCAACGAAGAATTGGTCAAGCTTAGCATGTCACGACCTTACTCGAACAAGATTTTTTCTGAATTTGTATAATTGTATTCTTAAGTTCTTTAGGGGGGTTTATCATGTTTTTTTATGTCATATATTTAATTCATATGCTATACCATGTTTTTTCATGTCTGTGTTCGGATCGGATCATCTTACACATGCATCGACAATTCTCACAAAACAATTGGATGAAATTGGATAATCCTATTATATGGGACACCCCAAAAGAGACTTTGTGGCTAAATTTTGTTTAATCTTTGTTTTGGAAGTGGTGGTTGGAATGAAACAATAGGATCTTCAACACCAAGCATCTTTTTGCATCATGATCTCATGGGATCCACCATTCAGACAAACAGAGTTGTATTTGAGTCATCATCTCCCCTTTTTTGTATTTATCACTTATCTTTTCTTTTCTCTCATTGGCATCATCTTCTATAAGATAATATGATCTTTTGTACTATTTTCACAAATCAATGAAGAAAATTATATGGTTGTCAAGAAAATTCGCA

Coding sequence (CDS)

ATGGCTCACATGGCGATGAGACATTGCTGTGTGAGAGCAGCAGAAAGGTCCCATTTTAACCCACAGACAAATTGCAAGAGTAACTTTATGTTCTTTTGGTGCTATTCTTATTTTCCATGGCTCAGCCAACCTTTTGCTGGATCCCTCACTTCATTGCCTGTAGATGCTTATGCTTGGAGGAGATTTCAGGAAGAAGAAGAAAGGAAGCGTGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGTAGAAGAAGAGCCTGAAGTGGATCCCGACATTGCAGCAATGATGGGATTTGGGGGCTTTCGTTCATCCAAGAAGTGA

Protein sequence

MAHMAMRHCCVRAAERSHFNPQTNCKSNFMFFWCYSYFPWLSQPFAGSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRSSKK
Homology
BLAST of Sed0023913 vs. NCBI nr
Match: RVW39177.1 (Zinc finger matrin-type protein 2 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 8.2e-14
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRS
Sbjct: 168 GSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAVEEEPELDPDVAAMMGFGGFRS 227

Query: 107 SKK 110
           SKK
Sbjct: 228 SKK 230

BLAST of Sed0023913 vs. NCBI nr
Match: RVW97943.1 (Zinc finger matrin-type protein 2 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 8.2e-14
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRS
Sbjct: 134 GSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAVEEEPELDPDVAAMMGFGGFRS 193

Query: 107 SKK 110
           SKK
Sbjct: 194 SKK 196

BLAST of Sed0023913 vs. NCBI nr
Match: XP_002282596.2 (PREDICTED: zinc finger matrin-type protein 2 isoform X1 [Vitis vinifera] >CBI39578.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 8.2e-14
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRS
Sbjct: 142 GSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAVEEEPELDPDVAAMMGFGGFRS 201

Query: 107 SKK 110
           SKK
Sbjct: 202 SKK 204

BLAST of Sed0023913 vs. NCBI nr
Match: TYJ96481.1 (zinc finger matrin-type protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-13
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRS
Sbjct: 149 GSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRS 208

Query: 107 SKK 110
           SKK
Sbjct: 209 SKK 211

BLAST of Sed0023913 vs. NCBI nr
Match: XP_011648855.1 (zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger matrin-type protein 2 [Cucumis sativus] >XP_031737170.1 zinc finger matrin-type protein 2 [Cucumis sativus] >KGN60986.1 hypothetical protein Csa_021129 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-13
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRS
Sbjct: 140 GSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRS 199

Query: 107 SKK 110
           SKK
Sbjct: 200 SKK 202

BLAST of Sed0023913 vs. ExPASy TrEMBL
Match: A0A438DUK2 (Zinc finger matrin-type protein 2 OS=Vitis vinifera OX=29760 GN=Zmat2_1 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.9e-14
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRS
Sbjct: 168 GSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAVEEEPELDPDVAAMMGFGGFRS 227

Query: 107 SKK 110
           SKK
Sbjct: 228 SKK 230

BLAST of Sed0023913 vs. ExPASy TrEMBL
Match: A0A438IMM2 (Zinc finger matrin-type protein 2 OS=Vitis vinifera OX=29760 GN=Zmat2_0 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.9e-14
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRS
Sbjct: 134 GSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAVEEEPELDPDVAAMMGFGGFRS 193

Query: 107 SKK 110
           SKK
Sbjct: 194 SKK 196

BLAST of Sed0023913 vs. ExPASy TrEMBL
Match: D7UA14 (U1-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g01370 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.9e-14
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   +D    ++ QEEEERKR+RRERKKEKKKEKAVEEEPE+DPD+AAMMGFGGFRS
Sbjct: 142 GSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAVEEEPELDPDVAAMMGFGGFRS 201

Query: 107 SKK 110
           SKK
Sbjct: 202 SKK 204

BLAST of Sed0023913 vs. ExPASy TrEMBL
Match: A0A1S3BWZ9 (zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRS
Sbjct: 140 GSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRS 199

Query: 107 SKK 110
           SKK
Sbjct: 200 SKK 202

BLAST of Sed0023913 vs. ExPASy TrEMBL
Match: A0A5D3BCY1 (Zinc finger matrin-type protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001260 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           GS T   ++    ++ QEEE+RKRERRERKKEKKKEKA EEEPEVDPD+AAMMGFGGFRS
Sbjct: 149 GSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRS 208

Query: 107 SKK 110
           SKK
Sbjct: 209 SKK 211

BLAST of Sed0023913 vs. TAIR 10
Match: AT3G05760.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-13
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 47  GSLTSLPVDAYAWRRFQEEEERKRERRERKKEKKKEKAVEEEPEVDPDIAAMMGFGGFRS 106
           G+ T   +D    ++ +EEEE KR+RRE+KKEKKK K VEEEPE+DP++A MMGFGGF S
Sbjct: 139 GTFTEQDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVEEEPEMDPEVAEMMGFGGFGS 198

Query: 107 SKK 110
           SKK
Sbjct: 199 SKK 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW39177.18.2e-1476.19Zinc finger matrin-type protein 2 [Vitis vinifera][more]
RVW97943.18.2e-1476.19Zinc finger matrin-type protein 2 [Vitis vinifera][more]
XP_002282596.28.2e-1476.19PREDICTED: zinc finger matrin-type protein 2 isoform X1 [Vitis vinifera] >CBI395... [more]
TYJ96481.13.1e-1374.60zinc finger matrin-type protein 2 [Cucumis melo var. makuwa][more]
XP_011648855.13.1e-1374.60zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438DUK23.9e-1476.19Zinc finger matrin-type protein 2 OS=Vitis vinifera OX=29760 GN=Zmat2_1 PE=4 SV=... [more]
A0A438IMM23.9e-1476.19Zinc finger matrin-type protein 2 OS=Vitis vinifera OX=29760 GN=Zmat2_0 PE=4 SV=... [more]
D7UA143.9e-1476.19U1-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g0137... [more]
A0A1S3BWZ91.5e-1374.60zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 S... [more]
A0A5D3BCY11.5e-1374.60Zinc finger matrin-type protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
AT3G05760.19.6e-1361.90C2H2 and C2HC zinc fingers superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023913.1Sed0023913.1mRNA
Sed0023913.2Sed0023913.2mRNA
Sed0023913.3Sed0023913.3mRNA
Sed0023913.4Sed0023913.4mRNA
Sed0023913.5Sed0023913.5mRNA
Sed0023913.6Sed0023913.6mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding