Sed0022461.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACAAAACGCAAACCACTGTAAATCCATTCCACGAAATGGCAATTCCATCCTCTCACATTCCGGCAGCCGTCTACTGCCTCCTGGCCGCCAGTTTCCTCGCCGGAGTCTCCAATTCCAGGGACCTCCGTCCATCGGAGCACGGCCTGGAGTTCCAAAACCCTACCGGAAACTCCTCGCCGGGAATGCAATCGTTCTTCAGAGGAAACTCCTGGCCTTCCTCTGAGGTCGCGCTTCCGAAGGCGATCAACACCAGCCTGCCGCAGCCGTGGTGGAATCGCAGCCGCGAACACCGCTCCGCCGCCGACGGTGGCGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGTTTGGTATGTGGAGTTATAGGCGTTTCCTTGCTGATTGCTTCTGCTTTTATTTACTTCTTTAAGTTTAGGAAGCAGAGTTGTAGATCGTCGTCGTCGTCGTCGATCTCCGGCTCGGAAACTGCTAACATTATTGATAACAAGTGATTTTGAAAGGCGGATTTGCATGTACATAGCTCTGAGATCTGGTCGCTGATCTTATTTTTGTAAGAGATTCATCTCTTTTTTTTCTTCTTTTTTCCTTTGATTTTTCTTCTGATGTGTTTGAATTGAGTTCCTGTAGTACTGAAACTTTAGATCTTCAGATATTCTAATACATGATTGCCAATTTCAGATTCATACACAGTTCATCTTGTTGCGAGATTTTAATTTTATTTATTCAAATAATGAGTAATTTAATTGTTCTGATCCACTGTTAAATTATTAGACTGTAGATTTTTTTTTTTTGAATTCAACTATAATTAATGTGGGAC CACAAAACGCAAACCACTGTAAATCCATTCCACGAAATGGCAATTCCATCCTCTCACATTCCGGCAGCCGTCTACTGCCTCCTGGCCGCCAGTTTCCTCGCCGGAGTCTCCAATTCCAGGGACCTCCGTCCATCGGAGCACGGCCTGGAGTTCCAAAACCCTACCGGAAACTCCTCGCCGGGAATGCAATCGTTCTTCAGAGGAAACTCCTGGCCTTCCTCTGAGGTCGCGCTTCCGAAGGCGATCAACACCAGCCTGCCGCAGCCGTGGTGGAATCGCAGCCGCGAACACCGCTCCGCCGCCGACGGTGGCGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGTTTGGTATGTGGAGTTATAGGCGTTTCCTTGCTGATTGCTTCTGCTTTTATTTACTTCTTTAAGTTTAGGAAGCAGAGTTGTAGATCGTCGTCGTCGTCGTCGATCTCCGGCTCGGAAACTGCTAACATTATTGATAACAAGTGATTTTGAAAGGCGGATTTGCATGTACATAGCTCTGAGATCTGGTCGCTGATCTTATTTTTGTAAGAGATTCATCTCTTTTTTTTCTTCTTTTTTCCTTTGATTTTTCTTCTGATGTGTTTGAATTGAGTTCCTGTAGTACTGAAACTTTAGATCTTCAGATATTCTAATACATGATTGCCAATTTCAGATTCATACACAGTTCATCTTGTTGCGAGATTTTAATTTTATTTATTCAAATAATGAGTAATTTAATTGTTCTGATCCACTGTTAAATTATTAGACTGTAGATTTTTTTTTTTTGAATTCAACTATAATTAATGTGGGAC ATGGCAATTCCATCCTCTCACATTCCGGCAGCCGTCTACTGCCTCCTGGCCGCCAGTTTCCTCGCCGGAGTCTCCAATTCCAGGGACCTCCGTCCATCGGAGCACGGCCTGGAGTTCCAAAACCCTACCGGAAACTCCTCGCCGGGAATGCAATCGTTCTTCAGAGGAAACTCCTGGCCTTCCTCTGAGGTCGCGCTTCCGAAGGCGATCAACACCAGCCTGCCGCAGCCGTGGTGGAATCGCAGCCGCGAACACCGCTCCGCCGCCGACGGTGGCGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGTTTGGTATGTGGAGTTATAGGCGTTTCCTTGCTGATTGCTTCTGCTTTTATTTACTTCTTTAAGTTTAGGAAGCAGAGTTGTAGATCGTCGTCGTCGTCGTCGATCTCCGGCTCGGAAACTGCTAACATTATTGATAACAAGTGA MAIPSSHIPAAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTGNSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIRGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK Homology
BLAST of Sed0022461.1 vs. NCBI nr
Match: XP_038895122.1 (uncharacterized protein LOC120083432 [Benincasa hispida]) HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47 Identity = 114/158 (72.15%), Postives = 125/158 (79.11%), Query Frame = 0
BLAST of Sed0022461.1 vs. NCBI nr
Match: XP_023000949.1 (uncharacterized protein LOC111495232 [Cucurbita maxima]) HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47 Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0
BLAST of Sed0022461.1 vs. NCBI nr
Match: XP_023519911.1 (uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47 Identity = 111/147 (75.51%), Postives = 119/147 (80.95%), Query Frame = 0
BLAST of Sed0022461.1 vs. NCBI nr
Match: KAG6583852.1 (hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019473.1 hypothetical protein SDJN02_18434, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 199.1 bits (505), Expect = 2.7e-47 Identity = 111/147 (75.51%), Postives = 119/147 (80.95%), Query Frame = 0
BLAST of Sed0022461.1 vs. NCBI nr
Match: XP_022954449.1 (uncharacterized protein LOC111456713 [Cucurbita moschata] >XP_023542159.1 uncharacterized protein LOC111802125 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 198.7 bits (504), Expect = 3.5e-47 Identity = 111/154 (72.08%), Postives = 123/154 (79.87%), Query Frame = 0
BLAST of Sed0022461.1 vs. ExPASy TrEMBL
Match: A0A6J1KLE3 (uncharacterized protein LOC111495232 OS=Cucurbita maxima OX=3661 GN=LOC111495232 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 7.6e-48 Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0
BLAST of Sed0022461.1 vs. ExPASy TrEMBL
Match: A0A6J1GT11 (uncharacterized protein LOC111456713 OS=Cucurbita moschata OX=3662 GN=LOC111456713 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47 Identity = 111/154 (72.08%), Postives = 123/154 (79.87%), Query Frame = 0
BLAST of Sed0022461.1 vs. ExPASy TrEMBL
Match: A0A6J1EH69 (uncharacterized protein LOC111434271 OS=Cucurbita moschata OX=3662 GN=LOC111434271 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47 Identity = 110/147 (74.83%), Postives = 119/147 (80.95%), Query Frame = 0
BLAST of Sed0022461.1 vs. ExPASy TrEMBL
Match: A0A5D3C2L6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00520 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47 Identity = 112/158 (70.89%), Postives = 125/158 (79.11%), Query Frame = 0
BLAST of Sed0022461.1 vs. ExPASy TrEMBL
Match: A0A1S3BC63 (uncharacterized protein LOC103488324 OS=Cucumis melo OX=3656 GN=LOC103488324 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47 Identity = 112/158 (70.89%), Postives = 125/158 (79.11%), Query Frame = 0
BLAST of Sed0022461.1 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 7.3e-11 Identity = 57/159 (35.85%), Postives = 81/159 (50.94%), Query Frame = 0
BLAST of Sed0022461.1 vs. TAIR 10
Match: AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08 Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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