Sed0022356.1 (mRNA) Chayote v1

Overview


Name	Sed0022356.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	protein RADIALIS-like 1
Location	LG04: 47374200 .. 47374625 (+)
Sequence length	267
RNA-Seq Expression	Sed0022356.1
Synteny	Sed0022356.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCCTCTCATGGGTCAAGTGCATGGACTGCAATGCAAAACAAGGCATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACACCTGAAAGATGGTTGAATGTTTCAAAGGCTGTAGGTGAGAAAAATGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAACATATTGAGTCTGGTCATGTTCCTTTTCCCTATCGAAACACAAGCGACAATCTTCCGAGGAAAAGAGGTAAATATATAAGATGTTAAATCATCAGTCAACTCAAGAGCTGAAATCGATGAGTTATGAAAATTTTTAAATCACCATAGCATAAACAAAATTTGTTGTCGTACACTAATTTAGTCAACACCGTGACCATTAATGTCTACATTTTGTCTTTTCTTCTAGGAAAAATGTTGTGA

mRNA sequence

ATGGCTTCAATGTCCTCTCATGGGTCAAGTGCATGGACTGCAATGCAAAACAAGGCATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACACCTGAAAGATGGTTGAATGTTTCAAAGGCTGTAGGTGAGAAAAATGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAACATATTGAGTCTGGTCATGTTCCTTTTCCCTATCGAAACACAAGCGACAATCTTCCGAGGAAAAGAGGAAAAATGTTGTGA

Coding sequence (CDS)

ATGGCTTCAATGTCCTCTCATGGGTCAAGTGCATGGACTGCAATGCAAAACAAGGCATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACACCTGAAAGATGGTTGAATGTTTCAAAGGCTGTAGGTGAGAAAAATGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAACATATTGAGTCTGGTCATGTTCCTTTTCCCTATCGAAACACAAGCGACAATCTTCCGAGGAAAAGAGGAAAAATGTTGTGA

Protein sequence

MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRGKML

Homology

[Close]

BLAST of Sed0022356.1 vs. NCBI nr
Match: KAG6572041.1 (Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 6.8e-35
Identity = 75/87 (86.21%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRGKM 88
          VKHIESG+VPFPYRN+SD+LPRKRG++
Sbjct: 61 VKHIESGNVPFPYRNSSDDLPRKRGRL 87

[Close]

BLAST of Sed0022356.1 vs. NCBI nr
Match: XP_022952273.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG7011709.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRG 86
          VKHIESG+VPFPYRN+SD+LPRKRG
Sbjct: 61 VKHIESGNVPFPYRNSSDDLPRKRG 85

[Close]

BLAST of Sed0022356.1 vs. NCBI nr
Match: XP_038888638.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 2.6e-34
Identity = 74/85 (87.06%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSSHGS+AWTAMQNK FEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL++D
Sbjct: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRG 86
          VKHIESG+VPFPY ++SD+LPRKRG
Sbjct: 61 VKHIESGNVPFPYPSSSDDLPRKRG 85

[Close]

BLAST of Sed0022356.1 vs. NCBI nr
Match: XP_022972527.1 (protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 154.1 bits (388), Expect = 5.7e-34
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEK EEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRG 86
          VKHIESG+VPFPYRN+SD+LPRKRG
Sbjct: 61 VKHIESGNVPFPYRNSSDDLPRKRG 85

[Close]

BLAST of Sed0022356.1 vs. NCBI nr
Match: XP_022136148.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSS GSSAWTAMQNKAFE+ALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLLVED
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGHVPFPYRNTS-DNLPRKRG 86
          VKHIESGHVPFPY+ ++ D+ P KRG
Sbjct: 61 VKHIESGHVPFPYQTSNDDDFPTKRG 86

[Close]

BLAST of Sed0022356.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-23
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 3  SMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVK 62
          SMSS+GS +WT  QNKAFE+ALAVYDQDTP+RW NV++AVG K  EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGHVPFP-YRNTSDNLPRKR 85
           IE+GHVPFP Y+ T+ N  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGR 87

[Close]

BLAST of Sed0022356.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-23
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 2  ASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDV 61
          +SMSS  S +WTA QNKAFE+ALA YDQDTP RW NV+K VG K  EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGHVPFPYRNTS 78
            IE+GHVPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of Sed0022356.1 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-21
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MAS S   SS+WT+ QNK FE+ALAVYD+DTP+RW NV+KAVG K+ EEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRG 86
          + +IE   VP P   T D   + RG
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRG 85

[Close]

BLAST of Sed0022356.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-20
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MAS    G   W+A +NKAFE+ALAVYD+DTP+RW NV++AV  +  EEVK+HY++LVED
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VKHIESGHVPFP-YRNTSDNL 81
          +K+IESG VPFP YR T  N+
Sbjct: 61 IKYIESGKVPFPNYRTTGGNM 80

[Close]

BLAST of Sed0022356.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-19
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MAS S   S++WT  +NK FE+ALA YDQDTP+RW NV++AVG K+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGHVPFP-YRNTSDN 80
          V  IESG  P P YR+  +N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Sed0022356.1 vs. ExPASy TrEMBL
Match: A0A6J1GK35 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.5e-35
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRG 86
          VKHIESG+VPFPYRN+SD+LPRKRG
Sbjct: 61 VKHIESGNVPFPYRNSSDDLPRKRG 85

[Close]

BLAST of Sed0022356.1 vs. ExPASy TrEMBL
Match: A0A6J1I517 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.8e-34
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEK EEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRG 86
          VKHIESG+VPFPYRN+SD+LPRKRG
Sbjct: 61 VKHIESGNVPFPYRNSSDDLPRKRG 85

[Close]

BLAST of Sed0022356.1 vs. ExPASy TrEMBL
Match: A0A6J1C6U4 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-33
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSS GSSAWTAMQNKAFE+ALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLLVED
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGHVPFPYRNTS-DNLPRKRG 86
          VKHIESGHVPFPY+ ++ D+ P KRG
Sbjct: 61 VKHIESGHVPFPYQTSNDDDFPTKRG 86

[Close]

BLAST of Sed0022356.1 vs. ExPASy TrEMBL
Match: A0A5D3D8F6 (Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00200 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSSHGS+AWT MQNK FEKALA YDQDTPERW+NV+KAVGEK EEEVKRHYQLL+ D
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYRNTS--DNLPRKRG 86
          VKHIESG+VPFPY  TS  D+LPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of Sed0022356.1 vs. ExPASy TrEMBL
Match: A0A1S3BHZ4 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MASMSSHGS+AWT MQNK FEKALA YDQDTPERW+NV+KAVGEK EEEVKRHYQLL+ D
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYRNTS--DNLPRKRG 86
          VKHIESG+VPFPY  TS  D+LPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of Sed0022356.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 8.8e-25
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 3  SMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVK 62
          SMSS+GS +WT  QNKAFE+ALAVYDQDTP+RW NV++AVG K  EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGHVPFP-YRNTSDNLPRKR 85
           IE+GHVPFP Y+ T+ N  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGR 87

[Close]

BLAST of Sed0022356.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-24
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 2  ASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDV 61
          +SMSS  S +WTA QNKAFE+ALA YDQDTP RW NV+K VG K  EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGHVPFPYRNTS 78
            IE+GHVPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of Sed0022356.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-22
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MAS S   SS+WT+ QNK FE+ALAVYD+DTP+RW NV+KAVG K+ EEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFPYRNTSDNLPRKRG 86
          + +IE   VP P   T D   + RG
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRG 85

[Close]

BLAST of Sed0022356.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-20
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MAS S    S WT  QNK FE+ALAVYD+DTP+RW NV+KAVG K  EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFPYRNTSDNLPR 83
          + +IE+G VP P   T ++  R
Sbjct: 61 LINIETGRVPLPNYKTFESNSR 82

[Close]

BLAST of Sed0022356.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-20
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVED 60
          MAS S    S WT  QNK FE+ALAVYD+DTP+RW NV+KAVG K  EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFPYRNTSDNLPR 83
          + +IE+G VP P   T ++  R
Sbjct: 61 LINIETGRVPLPNYKTFESNSR 82

The following BLAST results are available for this feature:

BLAST of Sed0022356.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572041.1	6.8e-35	86.21	Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952273.1	2.0e-34	88.24	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-li...	[more]
XP_038888638.1	2.6e-34	87.06	protein RADIALIS-like 1 [Benincasa hispida]	[more]
XP_022972527.1	5.7e-34	87.06	protein RADIALIS-like 1 [Cucurbita maxima]	[more]
XP_022136148.1	1.4e-32	86.05	protein RADIALIS-like 1 [Momordica charantia]	[more]

BLAST of Sed0022356.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	1.2e-23	65.06	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	2.1e-23	68.42	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q8GW75	5.8e-21	60.00	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q58FS3	2.2e-20	60.49	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	1.4e-19	58.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of Sed0022356.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK35	9.5e-35	88.24	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1	[more]
A0A6J1I517	2.8e-34	87.06	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1	[more]
A0A6J1C6U4	6.8e-33	86.05	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1	[more]
A0A5D3D8F6	1.3e-31	82.76	Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BHZ4	1.3e-31	82.76	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1	[more]

BLAST of Sed0022356.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	8.8e-25	65.06	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.5e-24	68.42	RAD-like 1	[more]
AT1G19510.1	4.1e-22	60.00	RAD-like 5	[more]
AT1G75250.1	2.3e-20	59.76	RAD-like 6	[more]
AT1G75250.2	2.3e-20	59.76	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 8.1E-5 score: 32.0
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 3.37847E-4 score: 33.3178
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 6.1E-21 score: 76.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..88
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..78
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..78
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 12..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022356	Sed0022356	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022356.1-exon	Sed0022356.1-exon-LG04:47374200..47374452	exon
Sed0022356.1-exon	Sed0022356.1-exon-LG04:47374612..47374625	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022356.1-cds	Sed0022356.1-cds-LG04:47374200..47374452	CDS
Sed0022356.1-cds	Sed0022356.1-cds-LG04:47374612..47374625	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022356.1	Sed0022356.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity