Sed0021321.2 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATATTATTATATAGTGTGTGTGTGGGATGCGAAACCGTGGAGAGAAAATAACGCAAAATGTTGGGTATTTTTCACAAAACTTTCGCACACCCACCTGAGGAACTCAACAGCCCTGCCTCTTTGAGCGGCTGTAAAACCCCTAAACTCCCTCAAGAAACGCTCGAAGAGTTTCTTGGTCGCCACCCTCACAACACTTTCTCTATCAATTTCGCTCAGGCTGCCGTTCTTGCTTATGTTCCTCCTGATCGCCCTTTCTCTCTCAACCAAAGGTAATTTATTTTACACCCAATTACTTTTAGTGGATATATTTGGGGGGGGAACAGAAATAGAAATGATCATGGGAAAATTGAATGTACAATGAATAAACTAATTAAGAACAACATAATTATTTGTATTTAGATTGAAAGGTTAAACTTAGATTAAATGATTATAGAGATAATGCTTATTTGTTTTCTAAGGGAAAAAGGTGATTATGAAAAAAATTAAATTAAATTTAAAGTACAAGTTTAGCGAAAGGGTTAGTAACATGTGTTTTTGATAAAATGGTCAATTTCGTTGTTTGGTGAAAATACAGTTCAAAATTACATTCACAGATTTGAACATAAAAATTGATATTTGGCTCTTGTTTATTCGATTGGCAATACACTGCTTGCCCTTTTTAACGCTCGGTGAATTAAGAGTTAGTTATTCCTATCATCGGTCCGTAAATATAGAGATTTCATATATTTAATGCTTATGCAATTATTTATGATAAGCACTAACATTTTAGATTTTATAGAACTATACGGAGCAAAGTCTATAGCTAGGTAAAAAAAAAAGAAGTGATTTTGGAGAAATATGTAACACCTAACATCAACATGTTTCCATTTTATCCCTTTGCCATTAATAACATCCCCTTAATCTCAAGGAATTTCGATTTCCCTTTTTGGTGGCAGGCTGTTCTGTGGGTTTGATGACATATACTGTGTGTTCTTGGGAACTTTGAACAATCTATGTGCGCTGAACAAGCAATACGGCTTATCCAAGGGCTCAAACGAGGCCATGTTTCTGATTGAGGCTTACAGGACACTTAGAGACAGAGGCCCTTACCCAGCTGATCAGGTCCTTAAAGACCTAGACGGCAGTTTTGCCTTTGTTGTTTACGACAGCAGGGCTGGTACTGTTTTTGCTGCCTTGGTAAGTACATACTACATTCATCTCGAAACTAATTGTTGTATTTCTGCCTCTTTTAAGCGCACCAATCTTAAATAGCGCCATCTCAATTTTATTAGTAATTTCTAGGGAGCTGATGGAGGAGTGAAGCTGTACTGGGGAATAGCAGCAGATGGGTCAGTGGTTATATCAGATGATGTGGAAGTGATAAAGGAAGGGTGTGCTAAATCATATGCACCATTCCCAACAGGATGCATGTTCCATAGTGAAGGAGGGCTCATGAGCTTTGAGCACCCACTGCACAAGATGAAGCCAATGCCAAGAATTGACAGTGAAGGGGCCATGTGTGGAGCTAACTTCAAGGTTGATGTGTATACAAGAGTCAACAGCATTCCTAGGAGAGGCAGTGCAGCTAATTGGGCTGAATGGGAAACTAAATAAAATATAACTCACACATCACATACATTTCTATATGTAATGCTTAATTACTTCCATGTTTTTACTCTTACCATTTCTCTCTCCAATCCCTGTAATTACACAATATAAAATTCCTCCCTCTTTGCCTTTTTATTTACTCCCCTCACTCCTCACTAACTTCTTCAAATTCTAAATTTAAACAAACTGATAACCTTAAAATTTAGGATCATACAAACTGACA ATATTATTATATAGTGTGTGTGTGGGATGCGAAACCGTGGAGAGAAAATAACGCAAAATGTTGGGTATTTTTCACAAAACTTTCGCACACCCACCTGAGGAACTCAACAGCCCTGCCTCTTTGAGCGGCTGTAAAACCCCTAAACTCCCTCAAGAAACGCTCGAAGAGTTTCTTGGTCGCCACCCTCACAACACTTTCTCTATCAATTTCGCTCAGGCTGCCGTTCTTGCTTATGTTCCTCCTGATCGCCCTTTCTCTCTCAACCAAAGGCTGTTCTGTGGGTTTGATGACATATACTGTGTGTTCTTGGGAACTTTGAACAATCTATGTGCGCTGAACAAGCAATACGGCTTATCCAAGGGCTCAAACGAGGCCATGTTTCTGATTGAGGCTTACAGGACACTTAGAGACAGAGGCCCTTACCCAGCTGATCAGGTCCTTAAAGACCTAGACGGCAGTTTTGCCTTTGTTGTTTACGACAGCAGGGCTGGTACTGTTTTTGCTGCCTTGGTAAGTACATACTACATTCATCTCGAAACTAATTGTTGTATTTCTGCCTCTTTTAAGCGCACCAATCTTAAATAGCGCCATCTCAATTTTATTAGTAATTTCTAGGGAGCTGATGGAGGAGTGAAGCTGTACTGGGGAATAGCAGCAGATGGGTCAGTGGTTATATCAGATGATGTGGAAGTGATAAAGGAAGGGTGTGCTAAATCATATGCACCATTCCCAACAGGATGCATGTTCCATAGTGAAGGAGGGCTCATGAGCTTTGAGCACCCACTGCACAAGATGAAGCCAATGCCAAGAATTGACAGTGAAGGGGCCATGTGTGGAGCTAACTTCAAGGTTGATGTGTATACAAGAGTCAACAGCATTCCTAGGAGAGGCAGTGCAGCTAATTGGGCTGAATGGGAAACTAAATAAAATATAACTCACACATCACATACATTTCTATATGTAATGCTTAATTACTTCCATGTTTTTACTCTTACCATTTCTCTCTCCAATCCCTGTAATTACACAATATAAAATTCCTCCCTCTTTGCCTTTTTATTTACTCCCCTCACTCCTCACTAACTTCTTCAAATTCTAAATTTAAACAAACTGATAACCTTAAAATTTAGGATCATACAAACTGACA ATGTTGGGTATTTTTCACAAAACTTTCGCACACCCACCTGAGGAACTCAACAGCCCTGCCTCTTTGAGCGGCTGTAAAACCCCTAAACTCCCTCAAGAAACGCTCGAAGAGTTTCTTGGTCGCCACCCTCACAACACTTTCTCTATCAATTTCGCTCAGGCTGCCGTTCTTGCTTATGTTCCTCCTGATCGCCCTTTCTCTCTCAACCAAAGGCTGTTCTGTGGGTTTGATGACATATACTGTGTGTTCTTGGGAACTTTGAACAATCTATGTGCGCTGAACAAGCAATACGGCTTATCCAAGGGCTCAAACGAGGCCATGTTTCTGATTGAGGCTTACAGGACACTTAGAGACAGAGGCCCTTACCCAGCTGATCAGGTCCTTAAAGACCTAGACGGCAGTTTTGCCTTTGTTGTTTACGACAGCAGGGCTGGTACTGTTTTTGCTGCCTTGGTAAGTACATACTACATTCATCTCGAAACTAATTGTTGTATTTCTGCCTCTTTTAAGCGCACCAATCTTAAATAG MLGIFHKTFAHPPEELNSPASLSGCKTPKLPQETLEEFLGRHPHNTFSINFAQAAVLAYVPPDRPFSLNQRLFCGFDDIYCVFLGTLNNLCALNKQYGLSKGSNEAMFLIEAYRTLRDRGPYPADQVLKDLDGSFAFVVYDSRAGTVFAALVSTYYIHLETNCCISASFKRTNLK Homology
BLAST of Sed0021321.2 vs. NCBI nr
Match: XP_022139643.1 (stem-specific protein TSJT1-like [Momordica charantia]) HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75 Identity = 136/151 (90.07%), Postives = 145/151 (96.03%), Query Frame = 0
BLAST of Sed0021321.2 vs. NCBI nr
Match: XP_022940896.1 (stem-specific protein TSJT1-like [Cucurbita moschata]) HSP 1 Score: 286.2 bits (731), Expect = 1.9e-73 Identity = 132/151 (87.42%), Postives = 142/151 (94.04%), Query Frame = 0
BLAST of Sed0021321.2 vs. NCBI nr
Match: KAG6607868.1 (LanC-like protein GCR2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 285.4 bits (729), Expect = 3.3e-73 Identity = 132/151 (87.42%), Postives = 142/151 (94.04%), Query Frame = 0
BLAST of Sed0021321.2 vs. NCBI nr
Match: KAG6591974.1 (Stem-specific protein TSJT1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 284.6 bits (727), Expect = 5.6e-73 Identity = 134/152 (88.16%), Postives = 143/152 (94.08%), Query Frame = 0
BLAST of Sed0021321.2 vs. NCBI nr
Match: XP_022981300.1 (stem-specific protein TSJT1-like [Cucurbita maxima]) HSP 1 Score: 284.6 bits (727), Expect = 5.6e-73 Identity = 132/151 (87.42%), Postives = 142/151 (94.04%), Query Frame = 0
BLAST of Sed0021321.2 vs. ExPASy Swiss-Prot
Match: P24805 (Stem-specific protein TSJT1 OS=Nicotiana tabacum OX=4097 GN=TSJT1 PE=2 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 9.1e-26 Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = 0
BLAST of Sed0021321.2 vs. ExPASy TrEMBL
Match: A0A6J1CG50 (stem-specific protein TSJT1-like OS=Momordica charantia OX=3673 GN=LOC111010495 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 7.6e-76 Identity = 136/151 (90.07%), Postives = 145/151 (96.03%), Query Frame = 0
BLAST of Sed0021321.2 vs. ExPASy TrEMBL
Match: A0A6J1FJN8 (stem-specific protein TSJT1-like OS=Cucurbita moschata OX=3662 GN=LOC111446347 PE=4 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 9.3e-74 Identity = 132/151 (87.42%), Postives = 142/151 (94.04%), Query Frame = 0
BLAST of Sed0021321.2 vs. ExPASy TrEMBL
Match: A0A6J1IZ39 (stem-specific protein TSJT1-like OS=Cucurbita maxima OX=3661 GN=LOC111480473 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 2.7e-73 Identity = 132/151 (87.42%), Postives = 142/151 (94.04%), Query Frame = 0
BLAST of Sed0021321.2 vs. ExPASy TrEMBL
Match: A0A6J1FE84 (stem-specific protein TSJT1 OS=Cucurbita moschata OX=3662 GN=LOC111443272 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 2.7e-73 Identity = 134/152 (88.16%), Postives = 143/152 (94.08%), Query Frame = 0
BLAST of Sed0021321.2 vs. ExPASy TrEMBL
Match: A0A6J1IH84 (stem-specific protein TSJT1-like OS=Cucurbita maxima OX=3661 GN=LOC111476923 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71 Identity = 132/152 (86.84%), Postives = 142/152 (93.42%), Query Frame = 0
BLAST of Sed0021321.2 vs. TAIR 10
Match: AT4G27450.1 (Aluminium induced protein with YGL and LRDR motifs ) HSP 1 Score: 247.3 bits (630), Expect = 9.2e-66 Identity = 116/153 (75.82%), Postives = 133/153 (86.93%), Query Frame = 0
BLAST of Sed0021321.2 vs. TAIR 10
Match: AT3G15450.1 (Aluminium induced protein with YGL and LRDR motifs ) HSP 1 Score: 218.8 bits (556), Expect = 3.5e-57 Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 0
BLAST of Sed0021321.2 vs. TAIR 10
Match: AT3G15450.2 (Aluminium induced protein with YGL and LRDR motifs ) HSP 1 Score: 218.8 bits (556), Expect = 3.5e-57 Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 0
BLAST of Sed0021321.2 vs. TAIR 10
Match: AT3G15450.3 (Aluminium induced protein with YGL and LRDR motifs ) HSP 1 Score: 218.8 bits (556), Expect = 3.5e-57 Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 0
BLAST of Sed0021321.2 vs. TAIR 10
Match: AT5G43830.1 (Aluminium induced protein with YGL and LRDR motifs ) HSP 1 Score: 129.4 bits (324), Expect = 2.8e-30 Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|