Sed0020625.1 (mRNA) Chayote v1

Overview
NameSed0020625.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG09: 29756445 .. 29760512 (-)
Sequence length651
RNA-Seq ExpressionSed0020625.1
SyntenySed0020625.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAATTTAGTATAACTGTTAACTATGGTGGTAAGTTTGCAAAAGGTCGAGACATATATGTAGGGGGCCTGAAATCGTCGTTTGAGAAAATTGATCCTAACTTATGGTATTTGTTTGAATTGTTTGATTTTGTTAAGTCTTTAGGCTTTAGCGAATGGGAAAATTTGTTGTATGAAAGTGAGGATGGTTGCTTTAAGGAAATAGATTCAGACAATGATGCGATGAATTTAGCTTGTTTAGCTATACAAAATGAAAATGCGTCTATAAATGTATACGTAGAACACGTAGAAAATGAGAATAGTTTACATGAGGATGATGAAATTGAACTTGATCAAACTTCTGATGAAGAAAATAATGTGAAGGATATTCATTTTTTTTATAGTGAGGATGACTTACTTGATGAGTTAGAATATATGAATGATAAAAGTAAACATAACGAACTTCGTTGTCAAAACAAAGATGGTGAACTTGATGTCGAAGAAGATGACGCATGCAATTTTGATTTAGATAAATTTTCTAACCCGAATTCACAGGATGACTGTAAGGTTTCCATCATTTAAAAATTTGAAAGATCCTTCGAAAATTCATTTTGAAGTTGGCATGTTGTTTAGCATCTTAGAAGAGTTTAAAAACGTTGTGTCTGAGTATGCCATAAATGAAGGGTGGTCGATTCGTTATGCAAAGAAAATAAAAGGAGAGTTCGACCTATATGCTCAAAAACATGTAATTGGGTTGCATATGTGACTAAAATGAAAAATGAAAATTCTTTTCAATTGGACAACCCAGTGATTGAGGCTAAGGACTCAATGCATGCTCCTTGAAAGATCACCAGTTTGAGGCCGTTGGAAAACGCTTAAACTAGAATACTCTTCAAAGTATCCCGACAGTCCATGGACGGTCTAGTGGTGCCCCAGGTATAGGGGAGCGAAGCTCCGATTTCCCAGTTTTTTTTTTTTAAAAAAAGAACTTTAGTTGATAAGCATACTTGCACCCGATCATTTAAGAATAGCATAGCAACATCAAAGTGGTTGGCTAACAAATTAGTCAACAGAGTTAAGGAACAACCTAACATAAAGTTAAGAACAATTCACGAAAAAATTCAACGTAAATATGTTGTTAAGATATTGAAGAGTAAATCATATAGAGTGAAGAGGAAAGTTATAGAGATGGTTCAAGGGAATCAGGCTAAACAATATGGAAAATTGTGGGAGTATTGTGGTGAACTACTGCAAGCTAATAACGGTAGTAGTGTTAAATTAAGTGTTGGTGCATATGACTGCATGGTAAAGGGAGAAGAACATCTAAAACCATCTAATATGTTTGAAAGATTATATATATGTTTCGATGAAATGAAGAATGGCTTCTTGGCTGGGTGTAGGCCATTTATTAGGTTGGATGGATGTCCTTTAAAAAGGGTCATATGGCGGCCAACTCTTATATGTTGTGGGTAGGGATCCAAACAATCAAATCTATCCCTTAGTATTTGTAGTGGTTGAGATAGAATGCAAAGCATCATTGGGCATGGTTTCTAAGTAACTTGTTGAATGATATTGGAGATATAAAGAAGTGTAGGTGGATATTTATAAGTGACTAATATGATTTATCGTGCCTTTTATATTATTTGTATTTTATTTATGTATATAGTTTATTTATGCCTTCAACAAAAGGTATGATTTATTATGCCTTTTATATATTTTCATTTGTTGCTCTCAAATTGTAGGGATTGGTGCAGACATTTGAAGAATTATTACCAGGTGTGGAGCATCGATTTTGTGTTAGACACTTGAACAACAATATGCAAAAAAATACCCCGAAAACAACTTAAGGATCTAATACGGAAATCATCCAATTCAACAACGCAACAAGAATGGATTAAAACAATGGGCTCAATCAAAAGTATTGAAGTTGGAGCTTATAATTGGCTAATTGCAATCCCCCCCTCCATTATGGTACGATGTAAGCATGCATTTAGTAGCTATTCTAAATGCGAAACCACCCTAAACAACATGTGTGAAGCTTTCAATTCCACGATACTAGAAGTCAGGGAAAAACCAATTACTGGGATGGTTGAATGAATTAGGCTTTACATAGAGAAGATTTTAAGAAAACAAACAAAAAATGAAAAATGTTAAGGAAATATTTTTCCCAAGGATTCAAGCGAAGTTGGAAGAGACTAAAAAGAAATGTGGGGGTTGGGTGTCTATTTGGTTCGAGGAAAAGAAGTATGAGGTTAGCAGGGGTTATAATAGTGAGGCATATATAGTGGACTTGAATAAGAGAACTTGTTCATGCTGGTATTGGAAGTTAACTAAACTCCCATGTGAGCATGCTATTAGTACCATTTTCTACAAGTCCGATACAATTGAAGATTATGTGGACGATTTTTATTTTATAACCACATATGAGAAATTTTATGCTCACATGATTCATCCCATAAATGGAGAAAGTTTGCGGTCACGTGTGAATAGTGACACAATTCTCCCTCCAATTAAAAGAAGACAACCTGGACGACCTAAGAAACTGAGACAAAGAGAGCCGGATGAAAAAAGACCACCTACTAAAATGAGTAGGAAAAAATATTTCCATATCATGCTCCATTGTCATCAAATCGGACATAACAAAGAAGTTGTAAAGCAAAGGTTAATAAAATGTTATTTTATGAAGCAACTTTATTAGCGCATAATATATTTATGTAGGGTACTTTAGTTCAATAGAATTGGAAAATGGAACAAATCTCTGGTTTATAAGTTTTTTTTAAATTTGTTTGGACTGAATAGTTTATGAAAATATCTCTATGGGTTAATAGTTTAGTTGATCAGTTTTTCTTTTTGTTATTTCAGAAAGTATTTCTGCTTTAGAAGCTCTGTGCATTAGATAGTTTTGTTGTTTTTGTTTTGTTTTCATCTTTCTTTGTATTGTTATTTCTTTCTCTTCATTGTCTCAATGAAAGATTCTCTTTGTTTCAAAAAAGAATATCACAAATATATGTTTAATGATTATTTTGTTTCAAATAGAATTCGGGTCAAAGTGTATCAATTCAAGCTTCACAAGAATCAGGAAGTGGACCAAATTATTTGTTATTTGTAAGTCTTTTTTTTTTAATGATGTTCATGTTTATGTTTATGAAAAAGATGTTTACATTTTTTTGTGCTAAAAATTATAATTTTGGATAGGGAAAAACTACTTATCTTCCACCAAGGACATCAACTGGAACTTTGATGAACAATACATCAAATGGAAAAAAAGAAAAACTGCCCAAAAGAAGAAAATTGAAGAAAAAAGTCACGATCGATTATAATGATTTCGAAATCTTGAAGAAGTTGTTCAAGAGATGATAAGCTTGGCGTAGTTACTCACTTTTGTAAAATCAAGCCTTATGTGAGTTTTGTGTATAAGATTAGAAAGTTTACATGAACTTAAATGACTATTTTTGTATACATATACATCATGTAGGTAGTAGAATTTTTTATTTTTTGGTATCTAATCTTTTAGAAAGGCTTCAATTTGATGACACTACTTAGTGGATTTGTTTAGTTTGAATTTTTGTATCTAAGGACAAGTTGAATGATGCTACATAGTATGAGCAAGTTAAAGGTTTATTAACTTTTGCAATTGATATATGCTTCCTTGAAGAGCTTTTAAATTTTAGAATATATTTAGAAGTGAGAAAAAGATTAATGAGGCAAAATAGGCTTATCATTTTTGTTAAAGGTACTCATGATTAAAGTTTCATATCATTTATAAGTGAGAAAAATGATCAATTGTATAAATTTAAAACAATCTGATGCAAACTTGGTTGCAGGAGGAGCTGTCCACAACGAAAGATGAGGCTTTTCGAATTTTGTTTAGGCTTAAGCGAATGTTGGATTCTCTTAAAGTAGAGGTAGTTTGATGATTTTGAATATATGAGATTTTGTTTTTGTGTTTTGTTTCTTGCTTGCCCATTTCTTTTTTAGAATTATTTTGTGTTCTTCGAATGGTGTTCTGATGTGGGTTGTTGTTAATGGTTTTGAGATGAAATTTTTCTGTCTTTATTCTAGTAGGTGATCTTTAGTGTTGCATGA

mRNA sequence

ATGACAGAATTTAGTATAACTGTTAACTATGGTGGTAAGTTTGCAAAAGGTCGAGACATATATGTAGGGGGCCTGAAATCGTCGTTTGAGAAAATTGATCCTAACTTATGGTATTTGTTTGAATTGTTTGATTTTGTTAAGTCTTTAGGCTTTAGCGAATGGGAAAATTTGTTGTATGAAAGTGAGGATGGTTGCTTTAAGGAAATAGATTCAGACAATGATGCGATGAATTTAGCTTGTTTAGCTATACAAAATGAAAATGCGTCTATAAATGTATACGTAGAACACGTAGAAAATGAGAATAGTTTACATGAGGATGATGAAATTGAACTTGATCAAACTTCTGATGAAGAAAATAATGTGAAGGATATTCATTTTTTTTATAGTGAGGATGACTTACTTGATGAGTTAGAATATATGAATGATAAAAGTAAACATAACGAACTTCGTTGTCAAAACAAAGATGGTGAACTTGATGTCGAAGAAGATGACGCATGCAATTTTGATTTAGATAAATTTTCTAACCCGAATTCACAGGATGACTGTAAGGAGGAGCTGTCCACAACGAAAGATGAGGCTTTTCGAATTTTGTTTAGGCTTAAGCGAATGTTGGATTCTCTTAAAGTAGAGGTGATCTTTAGTGTTGCATGA

Coding sequence (CDS)

ATGACAGAATTTAGTATAACTGTTAACTATGGTGGTAAGTTTGCAAAAGGTCGAGACATATATGTAGGGGGCCTGAAATCGTCGTTTGAGAAAATTGATCCTAACTTATGGTATTTGTTTGAATTGTTTGATTTTGTTAAGTCTTTAGGCTTTAGCGAATGGGAAAATTTGTTGTATGAAAGTGAGGATGGTTGCTTTAAGGAAATAGATTCAGACAATGATGCGATGAATTTAGCTTGTTTAGCTATACAAAATGAAAATGCGTCTATAAATGTATACGTAGAACACGTAGAAAATGAGAATAGTTTACATGAGGATGATGAAATTGAACTTGATCAAACTTCTGATGAAGAAAATAATGTGAAGGATATTCATTTTTTTTATAGTGAGGATGACTTACTTGATGAGTTAGAATATATGAATGATAAAAGTAAACATAACGAACTTCGTTGTCAAAACAAAGATGGTGAACTTGATGTCGAAGAAGATGACGCATGCAATTTTGATTTAGATAAATTTTCTAACCCGAATTCACAGGATGACTGTAAGGAGGAGCTGTCCACAACGAAAGATGAGGCTTTTCGAATTTTGTTTAGGCTTAAGCGAATGTTGGATTCTCTTAAAGTAGAGGTGATCTTTAGTGTTGCATGA

Protein sequence

MTEFSITVNYGGKFAKGRDIYVGGLKSSFEKIDPNLWYLFELFDFVKSLGFSEWENLLYESEDGCFKEIDSDNDAMNLACLAIQNENASINVYVEHVENENSLHEDDEIELDQTSDEENNVKDIHFFYSEDDLLDELEYMNDKSKHNELRCQNKDGELDVEEDDACNFDLDKFSNPNSQDDCKEELSTTKDEAFRILFRLKRMLDSLKVEVIFSVA
Homology
[Close]
BLAST of Sed0020625.1 vs. ExPASy TrEMBL
Match: A0A2N9IJT2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53818 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 53/183 (28.96%), Postives = 82/183 (44.81%), Query Frame = 0 

Query: 4   FSITVNYGGKFAKGRDIYVGGLKSSFEKIDPNLWYLFELFDFVKSLGFSEWENLLY---- 63
           FS+ V +GG F      Y GG+K+ F+K DP  W   E+   V+ LG++    L +    
Sbjct: 5   FSLVVYHGGYFVNNLRGYEGGIKTVFDKCDPEKWSKIEIDCMVRELGYALISRLWFRVPG 64

Query: 64  -ESEDGCFKEIDSDNDAMNLACLAIQNENASINVYVEHVENENSLHEDDEIELDQTSDEE 123
              EDG  ++I+SD   M      +      I V+VEH+  E  ++ D E   D   D  
Sbjct: 65  ISIEDGGLQQINSDAMLMT----ELVPGYGKIEVFVEHIVEEPIINSDFE---DVDDDYN 124

Query: 124 NNVKDIHFFYSEDDLLDELEYMNDKSKHNELRCQNKDGELDVEEDDACNFDLDKFSNPNS 182
            NV D H  + E+D + +++  +D          ++  + +    DA N D D     NS
Sbjct: 125 GNVDDDH--HVEEDEVVDVDEDDDLYDRYTNMMDDEIPDQNANNSDADNSDADSSDADNS 178

The following BLAST results are available for this feature:
BLAST of Sed0020625.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0020625.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0020625.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9IJT23.3e-0428.96Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53818 PE=4 SV=1[more]
BLAST of Sed0020625.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0020625Sed0020625gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0020625.1-exonSed0020625.1-exon-LG09:29756445..29756465exon
Sed0020625.1-exonSed0020625.1-exon-LG09:29756626..29756706exon
Sed0020625.1-exonSed0020625.1-exon-LG09:29759964..29760512exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0020625.1-cdsSed0020625.1-cds-LG09:29756445..29756465CDS
Sed0020625.1-cdsSed0020625.1-cds-LG09:29756626..29756706CDS
Sed0020625.1-cdsSed0020625.1-cds-LG09:29759964..29760512CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0020625.1Sed0020625.1-proteinpolypeptide