Sed0020625 (gene) Chayote v1

Overview


Name	Sed0020625
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG09: 29756445 .. 29760512 (-)
RNA-Seq Expression	Sed0020625
Synteny	Sed0020625

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAATTTAGTATAACTGTTAACTATGGTGGTAAGTTTGCAAAAGGTCGAGACATATATGTAGGGGGCCTGAAATCGTCGTTTGAGAAAATTGATCCTAACTTATGGTATTTGTTTGAATTGTTTGATTTTGTTAAGTCTTTAGGCTTTAGCGAATGGGAAAATTTGTTGTATGAAAGTGAGGATGGTTGCTTTAAGGAAATAGATTCAGACAATGATGCGATGAATTTAGCTTGTTTAGCTATACAAAATGAAAATGCGTCTATAAATGTATACGTAGAACACGTAGAAAATGAGAATAGTTTACATGAGGATGATGAAATTGAACTTGATCAAACTTCTGATGAAGAAAATAATGTGAAGGATATTCATTTTTTTTATAGTGAGGATGACTTACTTGATGAGTTAGAATATATGAATGATAAAAGTAAACATAACGAACTTCGTTGTCAAAACAAAGATGGTGAACTTGATGTCGAAGAAGATGACGCATGCAATTTTGATTTAGATAAATTTTCTAACCCGAATTCACAGGATGACTGTAAGGTTTCCATCATTTAAAAATTTGAAAGATCCTTCGAAAATTCATTTTGAAGTTGGCATGTTGTTTAGCATCTTAGAAGAGTTTAAAAACGTTGTGTCTGAGTATGCCATAAATGAAGGGTGGTCGATTCGTTATGCAAAGAAAATAAAAGGAGAGTTCGACCTATATGCTCAAAAACATGTAATTGGGTTGCATATGTGACTAAAATGAAAAATGAAAATTCTTTTCAATTGGACAACCCAGTGATTGAGGCTAAGGACTCAATGCATGCTCCTTGAAAGATCACCAGTTTGAGGCCGTTGGAAAACGCTTAAACTAGAATACTCTTCAAAGTATCCCGACAGTCCATGGACGGTCTAGTGGTGCCCCAGGTATAGGGGAGCGAAGCTCCGATTTCCCAGTTTTTTTTTTTTAAAAAAAGAACTTTAGTTGATAAGCATACTTGCACCCGATCATTTAAGAATAGCATAGCAACATCAAAGTGGTTGGCTAACAAATTAGTCAACAGAGTTAAGGAACAACCTAACATAAAGTTAAGAACAATTCACGAAAAAATTCAACGTAAATATGTTGTTAAGATATTGAAGAGTAAATCATATAGAGTGAAGAGGAAAGTTATAGAGATGGTTCAAGGGAATCAGGCTAAACAATATGGAAAATTGTGGGAGTATTGTGGTGAACTACTGCAAGCTAATAACGGTAGTAGTGTTAAATTAAGTGTTGGTGCATATGACTGCATGGTAAAGGGAGAAGAACATCTAAAACCATCTAATATGTTTGAAAGATTATATATATGTTTCGATGAAATGAAGAATGGCTTCTTGGCTGGGTGTAGGCCATTTATTAGGTTGGATGGATGTCCTTTAAAAAGGGTCATATGGCGGCCAACTCTTATATGTTGTGGGTAGGGATCCAAACAATCAAATCTATCCCTTAGTATTTGTAGTGGTTGAGATAGAATGCAAAGCATCATTGGGCATGGTTTCTAAGTAACTTGTTGAATGATATTGGAGATATAAAGAAGTGTAGGTGGATATTTATAAGTGACTAATATGATTTATCGTGCCTTTTATATTATTTGTATTTTATTTATGTATATAGTTTATTTATGCCTTCAACAAAAGGTATGATTTATTATGCCTTTTATATATTTTCATTTGTTGCTCTCAAATTGTAGGGATTGGTGCAGACATTTGAAGAATTATTACCAGGTGTGGAGCATCGATTTTGTGTTAGACACTTGAACAACAATATGCAAAAAAATACCCCGAAAACAACTTAAGGATCTAATACGGAAATCATCCAATTCAACAACGCAACAAGAATGGATTAAAACAATGGGCTCAATCAAAAGTATTGAAGTTGGAGCTTATAATTGGCTAATTGCAATCCCCCCCTCCATTATGGTACGATGTAAGCATGCATTTAGTAGCTATTCTAAATGCGAAACCACCCTAAACAACATGTGTGAAGCTTTCAATTCCACGATACTAGAAGTCAGGGAAAAACCAATTACTGGGATGGTTGAATGAATTAGGCTTTACATAGAGAAGATTTTAAGAAAACAAACAAAAAATGAAAAATGTTAAGGAAATATTTTTCCCAAGGATTCAAGCGAAGTTGGAAGAGACTAAAAAGAAATGTGGGGGTTGGGTGTCTATTTGGTTCGAGGAAAAGAAGTATGAGGTTAGCAGGGGTTATAATAGTGAGGCATATATAGTGGACTTGAATAAGAGAACTTGTTCATGCTGGTATTGGAAGTTAACTAAACTCCCATGTGAGCATGCTATTAGTACCATTTTCTACAAGTCCGATACAATTGAAGATTATGTGGACGATTTTTATTTTATAACCACATATGAGAAATTTTATGCTCACATGATTCATCCCATAAATGGAGAAAGTTTGCGGTCACGTGTGAATAGTGACACAATTCTCCCTCCAATTAAAAGAAGACAACCTGGACGACCTAAGAAACTGAGACAAAGAGAGCCGGATGAAAAAAGACCACCTACTAAAATGAGTAGGAAAAAATATTTCCATATCATGCTCCATTGTCATCAAATCGGACATAACAAAGAAGTTGTAAAGCAAAGGTTAATAAAATGTTATTTTATGAAGCAACTTTATTAGCGCATAATATATTTATGTAGGGTACTTTAGTTCAATAGAATTGGAAAATGGAACAAATCTCTGGTTTATAAGTTTTTTTTAAATTTGTTTGGACTGAATAGTTTATGAAAATATCTCTATGGGTTAATAGTTTAGTTGATCAGTTTTTCTTTTTGTTATTTCAGAAAGTATTTCTGCTTTAGAAGCTCTGTGCATTAGATAGTTTTGTTGTTTTTGTTTTGTTTTCATCTTTCTTTGTATTGTTATTTCTTTCTCTTCATTGTCTCAATGAAAGATTCTCTTTGTTTCAAAAAAGAATATCACAAATATATGTTTAATGATTATTTTGTTTCAAATAGAATTCGGGTCAAAGTGTATCAATTCAAGCTTCACAAGAATCAGGAAGTGGACCAAATTATTTGTTATTTGTAAGTCTTTTTTTTTTAATGATGTTCATGTTTATGTTTATGAAAAAGATGTTTACATTTTTTTGTGCTAAAAATTATAATTTTGGATAGGGAAAAACTACTTATCTTCCACCAAGGACATCAACTGGAACTTTGATGAACAATACATCAAATGGAAAAAAAGAAAAACTGCCCAAAAGAAGAAAATTGAAGAAAAAAGTCACGATCGATTATAATGATTTCGAAATCTTGAAGAAGTTGTTCAAGAGATGATAAGCTTGGCGTAGTTACTCACTTTTGTAAAATCAAGCCTTATGTGAGTTTTGTGTATAAGATTAGAAAGTTTACATGAACTTAAATGACTATTTTTGTATACATATACATCATGTAGGTAGTAGAATTTTTTATTTTTTGGTATCTAATCTTTTAGAAAGGCTTCAATTTGATGACACTACTTAGTGGATTTGTTTAGTTTGAATTTTTGTATCTAAGGACAAGTTGAATGATGCTACATAGTATGAGCAAGTTAAAGGTTTATTAACTTTTGCAATTGATATATGCTTCCTTGAAGAGCTTTTAAATTTTAGAATATATTTAGAAGTGAGAAAAAGATTAATGAGGCAAAATAGGCTTATCATTTTTGTTAAAGGTACTCATGATTAAAGTTTCATATCATTTATAAGTGAGAAAAATGATCAATTGTATAAATTTAAAACAATCTGATGCAAACTTGGTTGCAGGAGGAGCTGTCCACAACGAAAGATGAGGCTTTTCGAATTTTGTTTAGGCTTAAGCGAATGTTGGATTCTCTTAAAGTAGAGGTAGTTTGATGATTTTGAATATATGAGATTTTGTTTTTGTGTTTTGTTTCTTGCTTGCCCATTTCTTTTTTAGAATTATTTTGTGTTCTTCGAATGGTGTTCTGATGTGGGTTGTTGTTAATGGTTTTGAGATGAAATTTTTCTGTCTTTATTCTAGTAGGTGATCTTTAGTGTTGCATGA

mRNA sequence

ATGACAGAATTTAGTATAACTGTTAACTATGGTGGTAAGTTTGCAAAAGGTCGAGACATATATGTAGGGGGCCTGAAATCGTCGTTTGAGAAAATTGATCCTAACTTATGGTATTTGTTTGAATTGTTTGATTTTGTTAAGTCTTTAGGCTTTAGCGAATGGGAAAATTTGTTGTATGAAAGTGAGGATGGTTGCTTTAAGGAAATAGATTCAGACAATGATGCGATGAATTTAGCTTGTTTAGCTATACAAAATGAAAATGCGTCTATAAATGTATACGTAGAACACGTAGAAAATGAGAATAGTTTACATGAGGATGATGAAATTGAACTTGATCAAACTTCTGATGAAGAAAATAATGTGAAGGATATTCATTTTTTTTATAGTGAGGATGACTTACTTGATGAGTTAGAATATATGAATGATAAAAGTAAACATAACGAACTTCGTTGTCAAAACAAAGATGGTGAACTTGATGTCGAAGAAGATGACGCATGCAATTTTGATTTAGATAAATTTTCTAACCCGAATTCACAGGATGACTGTAAGGAGGAGCTGTCCACAACGAAAGATGAGGCTTTTCGAATTTTGTTTAGGCTTAAGCGAATGTTGGATTCTCTTAAAGTAGAGGTGATCTTTAGTGTTGCATGA

Coding sequence (CDS)

ATGACAGAATTTAGTATAACTGTTAACTATGGTGGTAAGTTTGCAAAAGGTCGAGACATATATGTAGGGGGCCTGAAATCGTCGTTTGAGAAAATTGATCCTAACTTATGGTATTTGTTTGAATTGTTTGATTTTGTTAAGTCTTTAGGCTTTAGCGAATGGGAAAATTTGTTGTATGAAAGTGAGGATGGTTGCTTTAAGGAAATAGATTCAGACAATGATGCGATGAATTTAGCTTGTTTAGCTATACAAAATGAAAATGCGTCTATAAATGTATACGTAGAACACGTAGAAAATGAGAATAGTTTACATGAGGATGATGAAATTGAACTTGATCAAACTTCTGATGAAGAAAATAATGTGAAGGATATTCATTTTTTTTATAGTGAGGATGACTTACTTGATGAGTTAGAATATATGAATGATAAAAGTAAACATAACGAACTTCGTTGTCAAAACAAAGATGGTGAACTTGATGTCGAAGAAGATGACGCATGCAATTTTGATTTAGATAAATTTTCTAACCCGAATTCACAGGATGACTGTAAGGAGGAGCTGTCCACAACGAAAGATGAGGCTTTTCGAATTTTGTTTAGGCTTAAGCGAATGTTGGATTCTCTTAAAGTAGAGGTGATCTTTAGTGTTGCATGA

Protein sequence

MTEFSITVNYGGKFAKGRDIYVGGLKSSFEKIDPNLWYLFELFDFVKSLGFSEWENLLYESEDGCFKEIDSDNDAMNLACLAIQNENASINVYVEHVENENSLHEDDEIELDQTSDEENNVKDIHFFYSEDDLLDELEYMNDKSKHNELRCQNKDGELDVEEDDACNFDLDKFSNPNSQDDCKEELSTTKDEAFRILFRLKRMLDSLKVEVIFSVA

Homology

[Close]

BLAST of Sed0020625 vs. ExPASy TrEMBL
Match: A0A2N9IJT2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53818 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 53/183 (28.96%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 4   FSITVNYGGKFAKGRDIYVGGLKSSFEKIDPNLWYLFELFDFVKSLGFSEWENLLY---- 63
           FS+ V +GG F      Y GG+K+ F+K DP  W   E+   V+ LG++    L +    
Sbjct: 5   FSLVVYHGGYFVNNLRGYEGGIKTVFDKCDPEKWSKIEIDCMVRELGYALISRLWFRVPG 64

Query: 64  -ESEDGCFKEIDSDNDAMNLACLAIQNENASINVYVEHVENENSLHEDDEIELDQTSDEE 123
              EDG  ++I+SD   M      +      I V+VEH+  E  ++ D E   D   D  
Sbjct: 65  ISIEDGGLQQINSDAMLMT----ELVPGYGKIEVFVEHIVEEPIINSDFE---DVDDDYN 124

Query: 124 NNVKDIHFFYSEDDLLDELEYMNDKSKHNELRCQNKDGELDVEEDDACNFDLDKFSNPNS 182
            NV D H  + E+D + +++  +D          ++  + +    DA N D D     NS
Sbjct: 125 GNVDDDH--HVEEDEVVDVDEDDDLYDRYTNMMDDEIPDQNANNSDADNSDADSSDADNS 178

The following BLAST results are available for this feature:

BLAST of Sed0020625 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0020625 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0020625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IJT2	3.3e-04	28.96	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53818 PE=4 SV=1	[more]

BLAST of Sed0020625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020625.1	Sed0020625.1	mRNA