Sed0020298.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTAACTAACAAGAAAAAAAAAAGACGTAGAAAGTTTTTTAGAAAAAGAAAATACAAAAAAAGAATCTTATTTTATAGTGGAAATTCAACTAAACAGCCTGTACTCGCGTTCTGGTCGGAGAAGAAGAAACAACCTTCTTTCTCTCGCCGGAATCATGCTCTCCGATCGATCCTTCAGCCACTTCTCAACGCTTCTCTTCTTCTTCTTTCTTTCAACGCTTTTCTCTGCTTCTTCCTCCGCTTCAATTTCAGGTAAAACTCACATTCCCAATCAATCATGCTCGATCCCTATATTCTCGATTTCTTGCTTCTTTTGCTTCTTCATTACTGATTTCCTCATCTCCGATTTTCTTTGCAGTTCATGTATTTGAATCCAAGCCTTCAATTGCTCGGAGCCTCCTACAGGAGAAAACAGGTTTTCCCCTCTTTCTTCGATTTTTTTTTTTTTTTCTGATTTCGTATTTGAATTCAATATAATTGTTGTAAGCAGGTTTCTGTTTAGTTTGTGGTTGTTCTGTGTGTATGAGATCTTGCCGATCTGCGATTCCTTTTTTCTTTTTCTTTTTTCTTATCGAGATTTTGTGATTGTTACTCTAGATTTAATGTAATGTATATAATATTACTCTAGATTTAGGGTTGTGTATATATATAGAGAGATACTTATCCTATTTGGAAAATTCATCAGAAATAAGACTTTTGTTCTTCTCATTTTCTGATCAATATGGTATAGAGTTCCATATGTTATTGGTCTCCCAAATTTCGATTCCATCAAAATATTTGTATCCACTCAATCGAGTAAGCGAAAGCAAGTATTTGAGATATTGACTGTTCCAGTCTCATTATCAATTGGTTTTGAGGTAGAATTTCATAAAGGTTAAAATGTCATTTTGGTCCCTCGACTTTCAAGTTTGTTCCATTTTGGTCCCTCGACTTTCAAATGTTTAATTTTAGTCGTTCGACTTTCATGTTTGTTTCATTTTGGTCCCTAGACTTTCAAATGTCCAAATTTAGTCCTTAGACTTTTTAAAATATTTAAAAATAGTCCTTGCTAAGTTAAAAAAAAAATTAACACCATTAACTTCAAATATTCTTCTTGTTCTTCATTCTTTTGCTTCTCCATTTGGAAGCTCTGTTTTTCTTTATTATCACTTTTTTTCATTTGTTCCAAACATACCTATACCCAACTTGTACTAAAAAATACCTAATGGTATTTTATTCCTAATGATACCACCAATTCTTGCCTGGCACCATCTTCTTTCTCATCACCTTCAGTCCACTCTTTCAAGATCATCCCAATAAACCCCATAAATTTGCTTTCATTTTCTTGTAGTCACATTTTTCTGGGTTTTGAATATAAAGGTAGTTAGAGTCGTTTTTAGTTTTAGCAAAAACACATTGCCAACTTTTTCACATTTTTAGATGAAATAAATTTGTGGATTTTTCATCTTCTAAAAATTAATTACAATTCTATCCAAGACCGAATCCAAAAATCAAAATCTTAACAGGGTGGATTAATCAATGAATTTGGGGCTTTTAGGTGTGTAAAGAATATTTATTTTGACAATATATTAGAATTTATGTGCGAAAAAATAAAAATTCTGGAAACTTGTTCATTCATTATTGTGTTTATCTCCTTCGCTGGCAAGTCAACCACCAAACTCCGTCTCACACTCCGATCCCATCAACACCTGCTCACTGCCTAGAAAGGGGTATAGGTATGTTTGGAACAAATGGGAAAAAAAACAGAGCTTCCAAATGGAGAAGCAAAAGAATGAAGAAGAAGAATATTTGAAGTTAACTTAGCAAGGACTATTTTTAAACATTTTAAAAAGTCTAGGGACCAAGTTTGGACATTTGAAAGTGTAGGGACTAAAATTAAACAAACATGAAAGTCGAGGGACTAAAATTAAACATTTGAAAGTCGAGGGATCAAAATGGAACAAACTTGAAAGTCGAAGGACCAAAATGGTATTTTAACCTATTATTTACTAATTAGTTTTCTGGGATCGGAGACCAATTAGTCAAATATATCTGACTTGACTAATTGGTTTTCTCGGATCTACTGGTGTTTTTCTTGGGTTTTTATTTTGCTACCATTGCCTTGAAAAAATAGGAAATTCAGCAGAATTTTATTGGGTTGAATTGAATGATTTGCTTAATTCATATTGGATTGTTCCACCTATCCGTAATTTACGCCGTGGTTCAGTGACGGAAAGTTGGAAAAAAAAAATGTAGAATAAGGAAAATGTGTATTTCTTCCTTCAGATTAATTGATGTCCTGTTTTAGTACTCATGGATTTTTTTTTTTTTTTAGTATAGAAATATGAAATTCGAATATGAGACTTCTAGATCGAAGATACATGCCAATTTTTATTGATATCAGCTCACTTTGACAGTACTCTTAGATTATTTATGGTGGGTATTTTGCATTAAGGGGGTTTTCCCAAAGTGGGCTCAAGATAAAAATGTCTAAATTTTCTCTTTCAAGAGTTTTTTATACGTAAATTATGGAACTTGTTATGACATCCGAGACAAAAAAAATAAAGATTTTCGTAGTTAGTGCACTACCATGAAACCCTATTACAACATATGACTTAATACATAAAAGTGCAATACAAAAATATAAACTCAATTACATATTTCAACTTGGTAATCGTGGGGCATCATAGTTCATAAACTTATCTCAAATGAAATCTTAGTTGAAAGATCTTGAACTTATGGTTTTATCATTTTCTTATAACTTTTCCAAGCTTATGTATGAGTTATGACAATGATTTGTCAGATGAGTTTGTTGTATTCTGTAAAAGCTTGTGAAGCTGATTATCCGTTGCATCTGCTTCTTGTGTCTAAAGGAAATTCCAAATGAAGATCAACCTCTCAATTTACTACCACCTTATTAAATATCAACTTCAGTAGATAACAAATTACAGAATTAAAGAAACTTTTGGTTAGCTTTTGATTTGAGATCTGGCACTTGAGGCATAAGTTTGTCTCTTTTTCTTTAATTGTTTCATTTTTTATCCATTTGTTAGACAATCTATAAGATTTTTTATGAAGCAGATAGGATTAGAAGCATGTTTTTATATTCCTTGGTATATGCTAGATTAATCTTTAGATTTCACATCAATTACTCAAGGGGAATGGGCAGCATTTGGTACATTTTATTGTAAGGAAAACCATTAGATTGCTTAAAAAATTTCTAAAGAAAAATGGAAGAGTGGCCTCCCAAACATAAGTGATCATAATCATATCACTCATAGAAGGTGTTTATATATAGAATTGTAGTCATTATTTTGAGTGATTATAAATGAAAGGTTATTTTGAGTGATTAAAAATTTGAGTTTTAGTAATGGCTCGTTAGGATGTGGTTATTTGTAGAGGGTATAGTTAATAGCTCATTTGGATAATGGTTTTTGTAGAGGAGTTGCAGACAATAGATCATTTAGATGTGGTTAGAAATGAGTGACCAGAAATGAATGATTAGAATTAGTGGAATAATTATTTTGTTACTCCATTTGGATATGATTGTTTGTGGACAAGTTGTAAAAATTCATGTGTAATAACTCGTTAATTATGTCAAACAAAAACCTCCCATAGAGTTACCCCCTCTAGATTCCAATTAGATATTATGCCTTACATTATCTGTGTTTTATAAGAAATCTGTACTTCTGATGCTATGTTAAGACAAATTTGGTCTAATCATGTAATACTACACAATTTATGCAGCTTGTCTAGTGAACTTTGAATTATTGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTCAATACCCTCCGTCTCTCTGTTGTCCCGCTTTGACCGAATTCGCTTGCCCTTACGCTGCAGATATCAACGCGGTAACAAATGATTGCGCTTCAACCATGTTCAGCTACATTAATCTGCATGGAAAATACCCTCCTGGTCTATTCTCTAACGAGTGCAAGGGTGATAAGATTGGTCTGGCATGCCATGCGCTCCCGCCCTCTGCTTCAGCCGATCTAAATTGGGGTTCGGTAACACGCTTGCCATCTCGTTTGCTTATCCTCTCAGCTGGATTCATACTGCTGTTTTGGCTATCATGATAAGGTTCAGGTGACTACCATTTTTCACCATTCTTTCTTCCAATTTGTAACTGTGCCTTAAACTTGCTGCAATTCTTTACTCTCATGTATTTATTATCATAGTTTATTCTATTCCATTCAGCTAAACTTGTGTATTCTACTACTTTAATAGCTGAGGAAAGTGAGATTTTGTTCATGAGATTGAACTGCAAAAGTTCTTATATAAGGTTTCTGGTGTATCATCATCTGTGATATATATATTACATTTTATTATATCATGTAAAAGTTCTATTTAA GTTAACTAACAAGAAAAAAAAAAGACGTAGAAAGTTTTTTAGAAAAAGAAAATACAAAAAAAGAATCTTATTTTATAGTGGAAATTCAACTAAACAGCCTGTACTCGCGTTCTGGTCGGAGAAGAAGAAACAACCTTCTTTCTCTCGCCGGAATCATGCTCTCCGATCGATCCTTCAGCCACTTCTCAACGCTTCTCTTCTTCTTCTTTCTTTCAACGCTTTTCTCTGCTTCTTCCTCCGCTTCAATTTCAGTTCATGTATTTGAATCCAAGCCTTCAATTGCTCGGAGCCTCCTACAGGAGAAAACAGCTTGTCTAGTGAACTTTGAATTATTGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTCAATACCCTCCGTCTCTCTGTTGTCCCGCTTTGACCGAATTCGCTTGCCCTTACGCTGCAGATATCAACGCGGTAACAAATGATTGCGCTTCAACCATGTTCAGCTACATTAATCTGCATGGAAAATACCCTCCTGGTCTATTCTCTAACGAGTGCAAGGGTGATAAGATTGGTCTGGCATGCCATGCGCTCCCGCCCTCTGCTTCAGCCGATCTAAATTGGGGTTCGGTAACACGCTTGCCATCTCGTTTGCTTATCCTCTCAGCTGGATTCATACTGCTGTTTTGGCTATCATGATAAGGTTCAGGTGACTACCATTTTTCACCATTCTTTCTTCCAATTTGTAACTGTGCCTTAAACTTGCTGCAATTCTTTACTCTCATGTATTTATTATCATAGTTTATTCTATTCCATTCAGCTAAACTTGTGTATTCTACTACTTTAATAGCTGAGGAAAGTGAGATTTTGTTCATGAGATTGAACTGCAAAAGTTCTTATATAAGGTTTCTGGTGTATCATCATCTGTGATATATATATTACATTTTATTATATCATGTAAAAGTTCTATTTAA ATGCTCTCCGATCGATCCTTCAGCCACTTCTCAACGCTTCTCTTCTTCTTCTTTCTTTCAACGCTTTTCTCTGCTTCTTCCTCCGCTTCAATTTCAGTTCATGTATTTGAATCCAAGCCTTCAATTGCTCGGAGCCTCCTACAGGAGAAAACAGCTTGTCTAGTGAACTTTGAATTATTGAACTACACCATCATCACAAGCAAGTGCAAGGGGCCTCAATACCCTCCGTCTCTCTGTTGTCCCGCTTTGACCGAATTCGCTTGCCCTTACGCTGCAGATATCAACGCGGTAACAAATGATTGCGCTTCAACCATGTTCAGCTACATTAATCTGCATGGAAAATACCCTCCTGGTCTATTCTCTAACGAGTGCAAGGGTGATAAGATTGGTCTGGCATGCCATGCGCTCCCGCCCTCTGCTTCAGCCGATCTAAATTGGGGTTCGGTAACACGCTTGCCATCTCGTTTGCTTATCCTCTCAGCTGGATTCATACTGCTGTTTTGGCTATCATGA MLSDRSFSHFSTLLFFFFLSTLFSASSSASISVHVFESKPSIARSLLQEKTACLVNFELLNYTIITSKCKGPQYPPSLCCPALTEFACPYAADINAVTNDCASTMFSYINLHGKYPPGLFSNECKGDKIGLACHALPPSASADLNWGSVTRLPSRLLILSAGFILLFWLS Homology
BLAST of Sed0020298.1 vs. NCBI nr
Match: KAG6592129.1 (GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 257.3 bits (656), Expect = 9.3e-65 Identity = 131/169 (77.51%), Postives = 141/169 (83.43%), Query Frame = 0
BLAST of Sed0020298.1 vs. NCBI nr
Match: XP_022936417.1 (GPI-anchored protein LLG1 [Cucurbita moschata]) HSP 1 Score: 255.8 bits (652), Expect = 2.7e-64 Identity = 130/169 (76.92%), Postives = 140/169 (82.84%), Query Frame = 0
BLAST of Sed0020298.1 vs. NCBI nr
Match: XP_023536509.1 (GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo] >XP_023536510.1 GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 255.8 bits (652), Expect = 2.7e-64 Identity = 130/169 (76.92%), Postives = 140/169 (82.84%), Query Frame = 0
BLAST of Sed0020298.1 vs. NCBI nr
Match: KAG7025004.1 (GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 255.4 bits (651), Expect = 3.5e-64 Identity = 130/169 (76.92%), Postives = 140/169 (82.84%), Query Frame = 0
BLAST of Sed0020298.1 vs. NCBI nr
Match: XP_022976292.1 (GPI-anchored protein LLG1-like [Cucurbita maxima]) HSP 1 Score: 253.1 bits (645), Expect = 1.7e-63 Identity = 128/169 (75.74%), Postives = 140/169 (82.84%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy Swiss-Prot
Match: Q9FKT1 (GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 4.8e-40 Identity = 89/159 (55.97%), Postives = 111/159 (69.81%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy Swiss-Prot
Match: B3GS44 (GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 8.8e-34 Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy Swiss-Prot
Match: Q9M0I0 (GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 1.7e-32 Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy Swiss-Prot
Match: Q6NLF4 (GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 7.0e-31 Identity = 70/145 (48.28%), Postives = 93/145 (64.14%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy TrEMBL
Match: A0A6J1F8E1 (GPI-anchored protein LLG1 OS=Cucurbita moschata OX=3662 GN=LOC111443044 PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64 Identity = 130/169 (76.92%), Postives = 140/169 (82.84%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy TrEMBL
Match: A0A6J1IFC4 (GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111476731 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 8.5e-64 Identity = 128/169 (75.74%), Postives = 140/169 (82.84%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy TrEMBL
Match: A0A6J1J2M4 (GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111480694 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 4.2e-63 Identity = 125/168 (74.40%), Postives = 137/168 (81.55%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy TrEMBL
Match: A0A6J1FTS4 (GPI-anchored protein LLG1-like OS=Cucurbita moschata OX=3662 GN=LOC111446763 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 2.7e-62 Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 0
BLAST of Sed0020298.1 vs. ExPASy TrEMBL
Match: A0A6J1CGJ1 (GPI-anchored protein LLG1-like OS=Momordica charantia OX=3673 GN=LOC111010609 PE=4 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58 Identity = 119/169 (70.41%), Postives = 135/169 (79.88%), Query Frame = 0
BLAST of Sed0020298.1 vs. TAIR 10
Match: AT5G56170.1 (LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 ) HSP 1 Score: 165.6 bits (418), Expect = 3.4e-41 Identity = 89/159 (55.97%), Postives = 111/159 (69.81%), Query Frame = 0
BLAST of Sed0020298.1 vs. TAIR 10
Match: AT4G26466.1 (lorelei ) HSP 1 Score: 144.8 bits (364), Expect = 6.2e-35 Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 0
BLAST of Sed0020298.1 vs. TAIR 10
Match: AT4G28280.2 (LORELEI-LIKE-GPI ANCHORED PROTEIN 3 ) HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33 Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 0
BLAST of Sed0020298.1 vs. TAIR 10
Match: AT2G20700.1 (LORELEI-LIKE-GPI ANCHORED PROTEIN 2 ) HSP 1 Score: 135.2 bits (339), Expect = 5.0e-32 Identity = 70/145 (48.28%), Postives = 93/145 (64.14%), Query Frame = 0
BLAST of Sed0020298.1 vs. TAIR 10
Match: AT4G28280.1 (LORELEI-LIKE-GPI ANCHORED PROTEIN 3 ) HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28 Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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