Sed0020139.1 (mRNA) Chayote v1

Overview


Name	Sed0020139.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	mediator of RNA polymerase II transcription subunit 19a-like
Location	LG07: 3879334 .. 3884345 (+)
Sequence length	711
RNA-Seq Expression	Sed0020139.1
Synteny	Sed0020139.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTGAAGATAAGAAGTTCGGTCTAGGTAAATATTGATTTACTTAATTTACTCCTCTCTCGTGCACTGGCATGTTTAAAAAGTGAGACATAGATTGGTCTATACATTGTTGCTTTTATATTTAGAAATATTTCTAATGATACTATAGGATTGTAAATGAACATACCTGTTTATGTTTCGAGTTAAAACATGCACTTGGGGTGCCCCCAAGGGGTGACATAGTTGTTGAAGGCTTGAGCTTTGAAAGTGTGCTCCCCTCAAGGTCTCAAGTTCGAGACTCTCCTGTTACATTAATTTGTAGACACCTCCCGTGTCCCCATTCCTTCGATGTCTCCTGGTGCCTGGCCTAAGAACGGACGTGGTTATCTTGGGTATAGTGGAGCAAAACTCCAATTTCCTGGTTTAAAAAGAAAAATGGCATTTTGTCTGTTATATTTGGTATGCAAGGATACTGTATGTTGACTATTGATAAAAAAAATCCATTTCTTTATGTTTACTCTTTTACTAGGAGCAACTTAGGTTAGACTAGTGGTTAAAAGGGAGTTCAATCCATGATATTTAGCAATTTATTTTCTATAAATTTCCTTGACACCAAATGTAGTAGGGTTAGATAATAATAGTCAAGGTGCATGCAAGCTTTTCTGGACACTCACAAATATGAAATATAGAGCAACTTAATTGGAGACTCTTCTTGTAAGTTGTTTTCTTTGTTTGAGCTATTTTTTTGTATGCTCCTTTGTATGTTCTTTCATTCTTTTCTTGATGAAAGTTTGGATCATTATAAAAAAGAGCCACTTAGGGAGTACTTAGGGAGTTAAATACATTAGCATTTTCTTCTAAATTCAATTGAAATGCTACGAGAGTTATTGATTTCAACCCCATAAGCCTAAAGCCTTACAATAAGTTTTGAAAAAGATCCTTGCGAAATTTCTTATTGGAGGGTTGAAAAGTTTCCTTCCTGAAATTGACCTTTTGTAGCTGAAAGCCAAATCATAGATCCCGTTCCAATTGCAAATGAAGCTATTGACGAGTGTAGAATAAGTTTAAGTAAGGGGTAATATTCTCACTTGACTTTGGAAAGACTTGAGGCTGTTTGGTATTTTTTAGACCATTCTATAGAAATCAAAGCACTACGATCTGATTCAGATGCTCTGTGGACATTCCTTTAGAAGGAAAGAAAAACTGTGGATTGAGTTGCTTAGCAAGAGGGGAAGGGGTTGGAAATTTGGAATGAGGTTCTTTCATTTCCTCTTCTTAGCATAACTTTCAAATTCCTATTTTTTTGGTTAAAACTCCTGTAGGAAGAATGATTCACGTACAGAATATCATTCTTGCTAGGAAAAATAATATTTTGTATACCGTAGGTCCGTAGAGAAGGTGGATTTGCGCTTTAGAGGTAGATGAAGAGATCTGCAATCCCCTTTTCCCTTTCTAAGTCATCATTTCCATCCATTCCCTTTATCATCATCTCCATCCATCGCAGCTGTATTTTGGAAAGTGTTGGAGTTGAGTTTGGTATGGGGTGTAAAGCTCACCAGCTTTTTTTACATATTGCTTGAAGGAATTCCGCATCCCACTCCCCTGTTGATCTCATATAATTCAAGGTTTCCTTTCTTCAAAGAAATATGGTCTTTCTGACTGTTGTCAGCACATTCCAAGGGTTCATTGTTACTTTTTCGTGCTAATTTCCCTTTCTTCTTTGGTTTGTTCATTTATTATTCGTATATTATTATTGTAACTCCTTGTGTCTCTTAGTCTTGTGCATTTTAAAATTTTATTTTATTATCCTTTGATTGGCTTTTCCTATTTAGTTAGTCGTTTAATCTGTTAAAATGTTTCTTTATTGCTTTTATTTCAATTTAAATAGAAAAGACCATGGAACCTTGGAAGTACAAGATATAGCTATTTTTTTATTCCATCTTGTTCATTTTCTATTTGTATTGATTATCTTCTGTCATCTGATTTTTTTCTATTTTATTTGTATCTACAGGACCTAGGGAATTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGAATTTTTCTGCAAGAAGTCACTTCCATTATCAATTTCAGACACACATTATCTTCATAACGTGATTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTCGACCAAGATATTCTCATAGAAGCCTTCCAATTGAGGGAAACTGGTCCTGTTGAGCTACCTTCTGTAAGAATTCTATTACTAAATTTGTTAACGTGAGCCGCTTTCTTTAACTTTCTTCTATCAGTATCAGCTGGAACTTTTATGTCACCAGGGCAACGGGTCTGATTACCAGTGTTTCTCATTCTGATTGTTTTCTCAGCAAGTGATGCTCCTTTGTTTTCTTTGGCTAGGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCATAAAGATAGGGATAAGGACAAGGATAGAGAACATAAGAAGCACAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGGCCATCAAGAATCTGGTGCAGACCATTCGAAGAAGCATCATGAAAAGGTTGGAAAGCCCTTACCTTACTCTTTTCCAGCTCCTTTGTAAAATACCAGGATTAGATAACAATGGGAATGAGATGGTTAGGGAGTAGATCGTCATTAAAATTTGATTAACATTATGGATTTTTTAGTTTATCCCAATTCCTAGTTTGTTGTTACAAGATGATCACTTCGTGAAGTGTATCCCTTTCATTGATTTTTTTCTTCATTTGGCCTAGATCATTGACCCCTTAGCATGCCCTAAAGACGGGGTATTGAAAACTTAATTGGCGTGTAACTTATTTTCTATGCTAAAAATTACGGATTAAGTAATCTTTTTGTGTCTTGCATATAGCTCAAATGAGCTGTTTCTTGATTTCTATCTTCATTTAATTTTCAGAAAAGGAAGCACGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAGGTAATACGAAGTCGACATTTTTCCAACTCTAGATTGTTCGCTTACTGAAAAGAATAATCATCCGGGTTCACTTTTATCTGCATAACCCATGTTTTGATTTTGAAATTGATTGTTTTCCAACTAAAAGTCTTCTGATTTATATATGCAGCATAAGACTGCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCAGGCTGACATTGTGGAATACTCTAGGTCATTTATTTCCTCGTATGGTTGTGTAGAAAGATTGGTGGAATTTTCACTTAATATTGTCAAAAAATACTTGAGGTATATTCATATCTTTCAAGTATCTTCTATATTCAATTGTTCTTCATTTGATTACATTCTTTTTCATTCCCGGTATTTTTTCCTTTCAAACCAAATTTTCATTGATATTTCATATTTGAAAAATCTTATGGCATAAAACTGTACCCATCATATAACTTAAAACAGTAAAATAGAAATTGTTAGAGTCTACAAAAAGACATCTCAACTGTATTTCACTACATTATGAGTATAACTTCACTAAGTGCTAGACTAGGTACTGAGGAGGCTCGGAACATAGAAGAATTAGGCTGTTAGCAATTCCCTTTGTAGGATTAGGATGTTAGCAAAATGTGAGAGATTCCATGTGCTATCTTTTGTATTGTAGAAATTAAGTTGTTCTTCTCTAGTTTATTTAGGGTTCCTCGGCAAGTTCGTAGAAAATACTATTTTTACATTAGATTGCGTCAGAGTTTGTTTTTTGGTGGAGTATAGTCTAGTATAGCTTTTGCAGGAAGATTTCACTCTCAAACTTCTTTCTCTTGGAGGATTTTTTATTCAAATGAGTCCAAGAAAGATTGTATAAGTTATCATTTAATCAAGTCACTACCATGTGGAAAACCATGGTGTTGAGAGTTAAAACCTTCCTTTTTTTTTATTGGAAACATACTTTTGTTCTCTTTTTGATAGGAAACAAATAATTTCATTGATATAAAGAATGTGTTACAAAAACCATTACAACCAAGTTAGGTCCCCTCTAATATCGGAAGATGACCAAAAACAGTTAGAACAAAACAAATCGAGGGGGTTTTGAGGACCAATTTTGGAGGAGCCAGGGGCAGAATAAACAAAACCATAGTGCAAGATGATCGATGCAATGAGGTAGATGAGCTTTGAACCGATACTAGGATGATATCTAAAATCGATCGGCTAAAAACCAGTATGGATAAGACATATTGGATCAGTGCAGTGGAACCGACCGATCCAATCTTGGATGGACCGAAGCATGCTATTACCAAAGTGGTTTGTAGGAAGAGCCGACCCACAAACTAGGGTTTTTCCATCTTTCTCATCCTCGATCCGTCTTTGCCGCCATCTGAATCGGAATCAGTGGGGAGAAGCTATTTGTGTGTGAGGTAGAAGATACCCTTGGCTATACCAAGGACATCATGAGCAAGAAGATTGAAGTAGATGTAGAGTCAGGCGCATGACTCTGTGAGGATAGTCTAAGTGTACATAACGTGATTCAAACACTTACGACAAAATAAAATAATAATTAAAAAAAAAAAACCTGTTGTGGTTGTCTGAAGTATGCCAATACTAATTGAGTATGCCAGGTTCTTCTCAAACTTTTATACTTTTATTTGTGGGAAGCTAAATCCATCTCAGTTGGCTGAGCCATGCAGAAATTGCCCGTTGTATAGTATCTTTAGTTCCATTGGTATAATGAATGACTTAGAGATAGTAGTTTAATCATTTTCTTATGCTCTTGTTTTCTCATATTTGGCTTCTCCTGGACCCTTTGATGATTGTTGTTTTTCTTTCTTCGTGCAGAGCAGCTTCTGAGGAGGGCAAATTTATCGATTTTAGGCTATGTGGAAGCAAATGTAAAAAAAAATGGGTGGAATGA

mRNA sequence

ATGGAATCTGAAGATAAGAAGTTCGGTCTAGGACCTAGGGAATTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGAATTTTTCTGCAAGAAGTCACTTCCATTATCAATTTCAGACACACATTATCTTCATAACGTGATTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTCGACCAAGATATTCTCATAGAAGCCTTCCAATTGAGGGAAACTGGTCCTGTTGAGCTACCTTCTGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCATAAAGATAGGGATAAGGACAAGGATAGAGAACATAAGAAGCACAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGGCCATCAAGAATCTGGTGCAGACCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCACGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACTGCAAAAATTGAAGAAATGGGAGTGATAAAGGAGGGCAAATTTATCGATTTTAGGCTATGTGGAAGCAAATGTAAAAAAAAATGGGTGGAATGA

Coding sequence (CDS)

ATGGAATCTGAAGATAAGAAGTTCGGTCTAGGACCTAGGGAATTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTACCTCACCATGAATTTTTCTGCAAGAAGTCACTTCCATTATCAATTTCAGACACACATTATCTTCATAACGTGATTGGAGACACAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATCCTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTCGACCAAGATATTCTCATAGAAGCCTTCCAATTGAGGGAAACTGGTCCTGTTGAGCTACCTTCTGCCGAGAAGGGTGTTCCTACTATTCCAGGGAAGTCAAAAAGCGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCATAAAGATAGGGATAAGGACAAGGATAGAGAACATAAGAAGCACAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGACAAAAGTGGCCATCAAGAATCTGGTGCAGACCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCACGATGGAGAAGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACTGCAAAAATTGAAGAAATGGGAGTGATAAAGGAGGGCAAATTTATCGATTTTAGGCTATGTGGAAGCAAATGTAAAAAAAAATGGGTGGAATGA

Protein sequence

MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRKGEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSKSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKHHEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIKEGKFIDFRLCGSKCKKKWVE

Homology

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BLAST of Sed0020139.1 vs. NCBI nr
Match: XP_022959852.1 (mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita moschata] >KAG6593062.1 Mediator of RNA polymerase II transcription subunit 19a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400.6 bits (1028), Expect = 9.4e-108
Identity = 209/216 (96.76%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKS HQ+SGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHK AKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. NCBI nr
Match: XP_023513830.1 (mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.8 bits (1026), Expect = 1.6e-107
Identity = 209/216 (96.76%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKS HQ+SGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSTHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHK AKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. NCBI nr
Match: KAG7025472.1 (Mediator of RNA polymerase II transcription subunit 19a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.4 bits (1025), Expect = 2.1e-107
Identity = 208/216 (96.30%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQNPSYPRETNARIQPFD+DILIEAFQLRETGPVELP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNPSYPRETNARIQPFDEDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKS HQ+SGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHK AKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. NCBI nr
Match: XP_016900359.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 6.1e-107
Identity = 207/216 (95.83%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKKDKSGHQ+SGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHK +KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. NCBI nr
Match: XP_023004820.1 (mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita maxima])

HSP 1 Score: 396.7 bits (1018), Expect = 1.4e-106
Identity = 206/216 (95.37%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ+PSYPRETNARIQPFDQDILIEAFQLRETGPVELP AEKGVPT+PGKSK
Sbjct: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
            ESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKS HQ+SGADHSKKH
Sbjct: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHK AKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. ExPASy Swiss-Prot
Match: Q9FMP0 (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana OX=3702 GN=MED19A PE=1 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-81
Identity = 164/220 (74.55%), Postives = 191/220 (86.82%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNV+GDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PVELP AEKG PTIP KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSGHQESGADH 180
           SESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+GH +SG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK++K++E+G I+
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIR 218

[Close]

BLAST of Sed0020139.1 vs. ExPASy Swiss-Prot
Match: Q6NQD9 (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana OX=3702 GN=MED19B PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 9.0e-69
Identity = 149/216 (68.98%), Postives = 177/216 (81.94%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN++GDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKS 120
           GEGMQL+QLI N S   R+TNARIQPF  D L EAF+L +T PVELP AEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   ++SG      
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKK-KEKSG------ 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK++K++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of Sed0020139.1 vs. ExPASy TrEMBL
Match: A0A6J1H5Q1 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita moschata OX=3662 GN=LOC111460791 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.6e-108
Identity = 209/216 (96.76%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKS HQ+SGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHK AKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. ExPASy TrEMBL
Match: A0A1S4DWJ4 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=3656 GN=LOC103489709 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.0e-107
Identity = 207/216 (95.83%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKKDKSGHQ+SGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHK +KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. ExPASy TrEMBL
Match: A0A6J1KVN1 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita maxima OX=3661 GN=LOC111498006 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.6e-107
Identity = 206/216 (95.37%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGQGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQ+PSYPRETNARIQPFDQDILIEAFQLRETGPVELP AEKGVPT+PGKSK
Sbjct: 61  GEGMQLNQLIQSPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTVPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
            ESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKS HQ+SGADHSKKH
Sbjct: 121 GESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKK+KHK AKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKNKHKAAKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. ExPASy TrEMBL
Match: A0A0A0K716 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.6e-107
Identity = 206/216 (95.37%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LPSAEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDKDRKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKKK+KSGHQ+SGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHK +KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. ExPASy TrEMBL
Match: A0A6J1CP39 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013422 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 7.3e-106
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESEDKKFG GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNV+GDTEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQLNQLIQN SYPRETNARIQPFDQDILIEAFQLRETGPV+LP AEKGVPTIPGKSK
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKKH 180
           SESKDK+RKHKKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKK+DKS H ESGADHSKKH
Sbjct: 121 SESKDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHKT+KIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK 216

[Close]

BLAST of Sed0020139.1 vs. TAIR 10
Match: AT5G12230.1 (MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-82
Identity = 164/220 (74.55%), Postives = 191/220 (86.82%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNV+GDTEIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKSK 120
           GEGMQL+QLI++ S  RETN RIQPFD D L E+FQL +  PVELP AEKG PTIP KSK
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDK----KKDKSGHQESGADH 180
           SESKD+DRKHKKHKDRDKDKDREHKKHKH+HKDRSKDKDKDK    KKDK+GH +SG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVIK 217
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK++K++E+G I+
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIR 218

[Close]

BLAST of Sed0020139.1 vs. TAIR 10
Match: AT5G19480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 261.5 bits (667), Expect = 6.4e-70
Identity = 149/216 (68.98%), Postives = 177/216 (81.94%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN++GDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKS 120
           GEGMQL+QLI N S   R+TNARIQPF  D L EAF+L +T PVELP AEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   ++SG      
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKK-KEKSG------ 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK++K++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of Sed0020139.1 vs. TAIR 10
Match: AT5G19480.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 15754 Blast hits to 7644 proteins in 441 species: Archae - 6; Bacteria - 451; Metazoa - 7628; Fungi - 1448; Plants - 1196; Viruses - 38; Other Eukaryotes - 4987 (source: NCBI BLink). )

HSP 1 Score: 261.5 bits (667), Expect = 6.4e-70
Identity = 149/216 (68.98%), Postives = 177/216 (81.94%), Query Frame = 0


Query: 1   MESEDKKFGLGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVIGDTEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN++GDTEIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNPSY-PRETNARIQPFDQDILIEAFQLRETGPVELPSAEKGVPTIPGKS 120
           GEGMQL+QLI N S   R+TNARIQPF  D L EAF+L +T PVELP AEKG PT   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 KSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQESGADHSKK 180
           KSESKDKDRKH+KHKD+ K+KDREHKKHKH+HKDR KDKDKDK +DK   ++SG      
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKK-KEKSG------ 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTAKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK++K++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

The following BLAST results are available for this feature:

BLAST of Sed0020139.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959852.1	9.4e-108	96.76	mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita moschata...	[more]
XP_023513830.1	1.6e-107	96.76	mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita pepo sub...	[more]
KAG7025472.1	2.1e-107	96.30	Mediator of RNA polymerase II transcription subunit 19a, partial [Cucurbita argy...	[more]
XP_016900359.1	6.1e-107	95.83	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]
XP_023004820.1	1.4e-106	95.37	mediator of RNA polymerase II transcription subunit 19a-like [Cucurbita maxima]	[more]

BLAST of Sed0020139.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMP0	1.6e-81	74.55	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
Q6NQD9	9.0e-69	68.98	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of Sed0020139.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5Q1	4.6e-108	96.76	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita moscha...	[more]
A0A1S4DWJ4	3.0e-107	95.83	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=...	[more]
A0A6J1KVN1	6.6e-107	95.37	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita maxima...	[more]
A0A0A0K716	8.6e-107	95.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1	[more]
A0A6J1CP39	7.3e-106	94.91	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momor...	[more]

BLAST of Sed0020139.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12230.1	1.1e-82	74.55	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19...	[more]
AT5G19480.1	6.4e-70	68.98	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G19480.2	6.4e-70	68.98	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019403	Mediator complex, subunit Med19, metazoa	PFAM	PF10278	Med19	coord: 12..171 e-value: 1.8E-7 score: 31.2
IPR019403	Mediator complex, subunit Med19, metazoa	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 1..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..157
None	No IPR available	PANTHER	PTHR22536:SF4	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 19A-LIKE ISOFORM X1	coord: 1..216

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0020139	Sed0020139	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020139.1-exon	Sed0020139.1-exon-LG07:3879334..3879364	exon
Sed0020139.1-exon	Sed0020139.1-exon-LG07:3881328..3881617	exon
Sed0020139.1-exon	Sed0020139.1-exon-LG07:3881785..3882012	exon
Sed0020139.1-exon	Sed0020139.1-exon-LG07:3882388..3882447	exon
Sed0020139.1-exon	Sed0020139.1-exon-LG07:3882596..3882634	exon
Sed0020139.1-exon	Sed0020139.1-exon-LG07:3884283..3884345	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020139.1-cds	Sed0020139.1-cds-LG07:3879334..3879364	CDS
Sed0020139.1-cds	Sed0020139.1-cds-LG07:3881328..3881617	CDS
Sed0020139.1-cds	Sed0020139.1-cds-LG07:3881785..3882012	CDS
Sed0020139.1-cds	Sed0020139.1-cds-LG07:3882388..3882447	CDS
Sed0020139.1-cds	Sed0020139.1-cds-LG07:3882596..3882634	CDS
Sed0020139.1-cds	Sed0020139.1-cds-LG07:3884283..3884345	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0020139.1	Sed0020139.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006777	Mo-molybdopterin cofactor biosynthetic process
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0019008	molybdopterin synthase complex
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0061798	GTP 3',8'-cyclase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046872	metal ion binding