Sed0019911.1 (mRNA) Chayote v1

Overview


Name	Sed0019911.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	calmodulin-like
Location	LG11: 24132222 .. 24132909 (+)
Sequence length	688
RNA-Seq Expression	Sed0019911.1
Synteny	Sed0019911.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAAGATAGGCATAAACCAACAAAATGGAACAAATTAAGCTATGAGAACTAAGCTCCCTTTAATAGTTCATCCACACCTCAACTTTACTTCACAATAATTCCTCAATTTCACACAGCTTCAGGGAATCAAATGTCTGGTAAATGCGAAAAGTCGAAGAGTTTTGGCCACCAGTTGACAAGGGAGGAAATGAAAGAAATTTTTAGGGAGTACGACCTCAATGGCGACGGCCGATTGAGCTTCGAAGAATTGTCGAGAGCATTTGGGACGTTTGGTGCATTTCTTCCTTACTATCGTGCAGCCCGTGGCTTATGTATTGCCGATGCCGATGGAGATGGATCGATCACTGAGAAAGAACTGGATAAGGTGGTAGATTATGCTATCAAGTGTAAGTATAACATGATATAGTTCTCTTCCATCCTGCCATGCAGGAAAGTTTCCTTTGAGGTGTGTTGTTTATAAATAAAACAGAACGTAATGTGTTCAAGAAACATTTGCTTTATTGTAACAGCATTTGCTAATGCAAGGAATGAAAAAAAATTCCAATAAATACAAAATGTATGGATGTAGAAGCAGAAAATGATTCGGTTTGGGTCGATCAGACAGATCGGTTCAGTTTTTTAGAGAAAAAAATTAATCCAACTCGAACTAAAATTGGTTGTGGTGGAGTAAATTTATTAGTTTGGCT

mRNA sequence

AATCAAGATAGGCATAAACCAACAAAATGGAACAAATTAAGCTATGAGAACTAAGCTCCCTTTAATAGTTCATCCACACCTCAACTTTACTTCACAATAATTCCTCAATTTCACACAGCTTCAGGGAATCAAATGTCTGGTAAATGCGAAAAGTCGAAGAGTTTTGGCCACCAGTTGACAAGGGAGGAAATGAAAGAAATTTTTAGGGAGTACGACCTCAATGGCGACGGCCGATTGAGCTTCGAAGAATTGTCGAGAGCATTTGGGACGTTTGGTGCATTTCTTCCTTACTATCGTGCAGCCCGTGGCTTATGTATTGCCGATGCCGATGGAGATGGATCGATCACTGAGAAAGAACTGGATAAGGTGGTAGATTATGCTATCAAGTGTAAGTATAACATGATATAGTTCTCTTCCATCCTGCCATGCAGGAAAGTTTCCTTTGAGGTGTGTTGTTTATAAATAAAACAGAACGTAATGTGTTCAAGAAACATTTGCTTTATTGTAACAGCATTTGCTAATGCAAGGAATGAAAAAAAATTCCAATAAATACAAAATGTATGGATGTAGAAGCAGAAAATGATTCGGTTTGGGTCGATCAGACAGATCGGTTCAGTTTTTTAGAGAAAAAAATTAATCCAACTCGAACTAAAATTGGTTGTGGTGGAGTAAATTTATTAGTTTGGCT

Coding sequence (CDS)

ATGTCTGGTAAATGCGAAAAGTCGAAGAGTTTTGGCCACCAGTTGACAAGGGAGGAAATGAAAGAAATTTTTAGGGAGTACGACCTCAATGGCGACGGCCGATTGAGCTTCGAAGAATTGTCGAGAGCATTTGGGACGTTTGGTGCATTTCTTCCTTACTATCGTGCAGCCCGTGGCTTATGTATTGCCGATGCCGATGGAGATGGATCGATCACTGAGAAAGAACTGGATAAGGTGGTAGATTATGCTATCAAGTGTAAGTATAACATGATATAG

Protein sequence

MSGKCEKSKSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITEKELDKVVDYAIKCKYNMI

Homology

[Close]

BLAST of Sed0019911.1 vs. NCBI nr
Match: KGN62515.1 (hypothetical protein Csa_022644 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-26
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MSGKCEKSKSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGL 60
          M+ +    K  G++L +EEMKE+FRE+D NGDGRLS +ELSRAFG FGAF P YRAA GL
Sbjct: 1  MTRQLYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGL 60

Query: 61 CIADADGDGSITEKELDKVVDYAIKCKYNMI 92
           +AD DGDG I+E+ELDKVVDYAIKCKYN++
Sbjct: 61 FLADDDGDGFISEQELDKVVDYAIKCKYNLL 91

[Close]

BLAST of Sed0019911.1 vs. NCBI nr
Match: KAA0060893.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-26
Identity = 61/86 (70.93%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 6  EKSKSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADA 65
          +K KS G++L +EEMK+IFRE+D NGDGRLS +ELSRAFG+FGAF P YRAA GL +AD 
Sbjct: 7  DKKKS-GYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADD 66

Query: 66 DGDGSITEKELDKVVDYAIKCKYNMI 92
          DGDG I+E+EL+KVVDYAIKCKYN++
Sbjct: 67 DGDGFISEQELEKVVDYAIKCKYNLL 91

[Close]

BLAST of Sed0019911.1 vs. NCBI nr
Match: KAG6585660.1 (Calmodulin-like protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.0 bits (310), Expect = 6.6e-25
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 14 QLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITE 73
          +L REE+K IFRE+D+NGDGRLS +ELSRAFG FGAFLP YRAAR +  ADA+GDG ITE
Sbjct: 14 RLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITE 73

Query: 74 KELDKVVDYAIKCKYNMI 92
          +ELDKVVDYAIKCKYN+I
Sbjct: 74 QELDKVVDYAIKCKYNII 91

[Close]

BLAST of Sed0019911.1 vs. NCBI nr
Match: KAG6585659.1 (hypothetical protein SDJN03_18392, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 9  KSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGD 68
          K+    L REE+K IF+E+D NGDGRLS +ELSRAFG  GAFLP YRA RG+ IAD +GD
Sbjct: 8  KNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGD 67

Query: 69 GSITEKELDKVVDYAIKCKYNMI 92
          G ITE ELDKVVDYAIKCKYN+I
Sbjct: 68 GYITEHELDKVVDYAIKCKYNII 90

[Close]

BLAST of Sed0019911.1 vs. NCBI nr
Match: XP_004152805.1 (probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MSGKCEKSKSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGL 60
          M+ +    K  G++L +EEMKE+FRE+D NGDGRLS +ELSRAFG FGAF P YRAA GL
Sbjct: 1  MTRQLYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGL 60

Query: 61 CIADADGDGSITEKELDKVVDYAIK 86
           +AD DGDG I+E+ELDKVVDYAIK
Sbjct: 61 FLADDDGDGFISEQELDKVVDYAIK 85

[Close]

BLAST of Sed0019911.1 vs. ExPASy Swiss-Prot
Match: Q8RZB5 (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 GN=CML10 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 18 EEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITEKE 76
          EEM+ +FR++D NGDGR+S  EL   F + G        AR +  ADADGDG I+  E
Sbjct: 39 EEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDE 96

[Close]

BLAST of Sed0019911.1 vs. ExPASy Swiss-Prot
Match: Q8L3R2 (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 13  HQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSI 72
           HQ ++EE++++F  +D +GDG++S  EL   FG+ G ++ +  A   +   D D DGS+
Sbjct: 58  HQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSL 116

[Close]

BLAST of Sed0019911.1 vs. ExPASy Swiss-Prot
Match: Q2QVI1 (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica OX=39947 GN=CML28 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.0e-05
Identity = 21/57 (36.84%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 19 EMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITEKE 76
          E++++F+ +D NGDGR++ +EL  +F  FG F+P       +   DA+GDG +  +E
Sbjct: 5  ELRKVFKMFDKNGDGRITKKELGESFKNFGIFIPDDELDATMDKIDANGDGCVDVEE 61

[Close]

BLAST of Sed0019911.1 vs. ExPASy Swiss-Prot
Match: Q6L5F4 (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 24/68 (35.29%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 13  HQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSIT 72
           H + + ++ E+FR +D +G+G +S  EL+R+    G  L +    R +  AD DGDG I+
Sbjct: 95  HLVDQAQLLEVFRAFDRDGNGFISAAELARSMARLGQPLTFEELTRMMRDADTDGDGVIS 154

Query: 73  EKELDKVV 81
            KE   V+
Sbjct: 155 FKEFAAVM 162

[Close]

BLAST of Sed0019911.1 vs. ExPASy Swiss-Prot
Match: Q6L4D4 (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica OX=39947 GN=CML15 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 18  EEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSIT 73
           +E + +FR++D NGDGR+S  EL+  F + G  +     AR +  AD+DGDG I+
Sbjct: 54  DETERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYIS 108

[Close]

BLAST of Sed0019911.1 vs. ExPASy TrEMBL
Match: A0A0A0LKW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MSGKCEKSKSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGL 60
          M+ +    K  G++L +EEMKE+FRE+D NGDGRLS +ELSRAFG FGAF P YRAA GL
Sbjct: 1  MTRQLYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGL 60

Query: 61 CIADADGDGSITEKELDKVVDYAIKCKYNMI 92
           +AD DGDG I+E+ELDKVVDYAIKCKYN++
Sbjct: 61 FLADDDGDGFISEQELDKVVDYAIKCKYNLL 91

[Close]

BLAST of Sed0019911.1 vs. ExPASy TrEMBL
Match: A0A5A7UY46 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00260 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 61/86 (70.93%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 6  EKSKSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADA 65
          +K KS G++L +EEMK+IFRE+D NGDGRLS +ELSRAFG+FGAF P YRAA GL +AD 
Sbjct: 7  DKKKS-GYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADD 66

Query: 66 DGDGSITEKELDKVVDYAIKCKYNMI 92
          DGDG I+E+EL+KVVDYAIKCKYN++
Sbjct: 67 DGDGFISEQELEKVVDYAIKCKYNLL 91

[Close]

BLAST of Sed0019911.1 vs. ExPASy TrEMBL
Match: A0A6J1CS20 (calmodulin-like protein 5 OS=Momordica charantia OX=3673 GN=LOC111014054 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MSGKCEKSKSFGHQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGL 60
          M+ KC K K    +L REE+K IFR +D+NGDG LS +ELSRAFG+ GA LP YRA  G+
Sbjct: 1  MTHKCVKKKP-SIKLLREEVKAIFRAHDINGDGHLSIKELSRAFGSLGALLPLYRAVCGI 60

Query: 61 CIADADGDGSITEKELDKVVDYAIKCKYNMI 92
            ADADGDG IT++EL+KVVDYA+KCKY++I
Sbjct: 61 LAADADGDGLITDEELEKVVDYAVKCKYDII 90

[Close]

BLAST of Sed0019911.1 vs. ExPASy TrEMBL
Match: A0A0A0LRC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.1e-17
Identity = 44/75 (58.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 14 QLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITE 73
          QL+RE++KEIFRE+D++GDGRLS  E+ +AFG FG+ LP+Y+A  G+  AD +GDG I E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFIEE 68

Query: 74 KELDKVVDYAIKCKY 89
          +ELDK+VDYA K ++
Sbjct: 69 EELDKLVDYAQKFQH 83

[Close]

BLAST of Sed0019911.1 vs. ExPASy TrEMBL
Match: A0A5A7UYC0 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00250 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.3e-17
Identity = 44/75 (58.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 14 QLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITE 73
          QL+RE++KEIFRE+D++GDGRLS  E+ +AFG FG+ LP+Y+A  G+  AD +GDG I E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGYIEE 68

Query: 74 KELDKVVDYAIKCKY 89
          +ELDK+VDYA K ++
Sbjct: 69 EELDKLVDYAEKFQH 83

[Close]

BLAST of Sed0019911.1 vs. TAIR 10
Match: AT3G50770.1 (calmodulin-like 41 )

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 13  HQLTREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSI 72
           HQ ++EE++++F  +D +GDG++S  EL   FG+ G ++ +  A   +   D D DGS+
Sbjct: 58  HQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSL 116

[Close]

BLAST of Sed0019911.1 vs. TAIR 10
Match: AT2G43290.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.8e-05
Identity = 21/71 (29.58%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 19  EMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITEKELDK 78
           E+K +F+ +D NGDGR++ EEL+ +    G ++P     + +   DA+GDG +   E + 
Sbjct: 65  ELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFES 124

Query: 79  VVDYAIKCKYN 90
           +    +   +N
Sbjct: 125 LYSSIVDEHHN 135

[Close]

BLAST of Sed0019911.1 vs. TAIR 10
Match: AT3G59440.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 20/61 (32.79%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 19  EMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITEKELDK 78
           ++K +F+ +D NGDGR++ EEL+ +    G F+P     + +   DA+GDG +   E + 
Sbjct: 51  DLKRVFQMFDKNGDGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFES 110

Query: 79  V 80
           +
Sbjct: 111 L 111

[Close]

BLAST of Sed0019911.1 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 22/60 (36.67%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 16 TREEMKEIFREYDLNGDGRLSFEELSRAFGTFGAFLPYYRAARGLCIADADGDGSITEKE 75
          T  E+K++F ++D NGDG++S  EL   F + G         R L   D D DG I ++E
Sbjct: 17 TDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEE 76

The following BLAST results are available for this feature:

BLAST of Sed0019911.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62515.1	4.5e-26	67.03	hypothetical protein Csa_022644 [Cucumis sativus]	[more]
KAA0060893.1	7.7e-26	70.93	putative calcium-binding protein CML10 [Cucumis melo var. makuwa]	[more]
KAG6585660.1	6.6e-25	76.92	Calmodulin-like protein 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6585659.1	1.5e-24	71.08	hypothetical protein SDJN03_18392, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004152805.1	2.3e-22	67.06	probable calcium-binding protein CML10 [Cucumis sativus]	[more]

BLAST of Sed0019911.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RZB5	4.2e-06	46.55	Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q8L3R2	4.2e-06	35.59	Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ...	[more]
Q2QVI1	6.0e-05	36.84	Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q6L5F4	1.3e-04	35.29	Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q6L4D4	1.7e-04	41.82	Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Sed0019911.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKW4	2.2e-26	67.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1	[more]
A0A5A7UY46	3.8e-26	70.93	Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1CS20	1.1e-22	62.64	calmodulin-like protein 5 OS=Momordica charantia OX=3673 GN=LOC111014054 PE=4 SV...	[more]
A0A0A0LRC1	7.1e-17	58.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1	[more]
A0A5A7UYC0	9.3e-17	58.67	Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Sed0019911.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50770.1	3.0e-07	35.59	calmodulin-like 41	[more]
AT2G43290.1	2.8e-05	29.58	Calcium-binding EF-hand family protein	[more]
AT3G59440.1	4.7e-05	32.79	Calcium-binding EF-hand family protein	[more]
AT1G73630.1	1.8e-04	36.67	EF hand calcium-binding protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00450	RECOVERIN	coord: 69..87 score: 27.53 coord: 23..44 score: 42.13
None	No IPR available	GENE3D	1.10.238.10		coord: 9..86 e-value: 5.9E-15 score: 56.6
None	No IPR available	PANTHER	PTHR10891:SF911	SUBFAMILY NOT NAMED	coord: 8..85
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 8..85
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 19..47 e-value: 4.7E-7 score: 39.4 coord: 55..83 e-value: 130.0 score: 0.8
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 63..80 e-value: 0.0038 score: 16.7
IPR002048	EF-hand domain	PFAM	PF00036	EF-hand_1	coord: 19..44 e-value: 7.2E-9 score: 34.6
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 15..50 score: 15.740803
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 19..80 e-value: 4.47058E-10 score: 48.6981
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 28..40
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 64..76
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 16..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0019911	Sed0019911	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019911.1-five_prime_utr	Sed0019911.1-five_prime_utr-LG11:24132222..24132353	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019911.1-exon	Sed0019911.1-exon-LG11:24132222..24132909	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019911.1-cds	Sed0019911.1-cds-LG11:24132354..24132629	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019911.1-three_prime_utr	Sed0019911.1-three_prime_utr-LG11:24132630..24132909	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0019911.1	Sed0019911.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding