Sed0018809.2 (mRNA) Chayote v1

Overview


Name	Sed0018809.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	glycine-rich RNA-binding protein-like
Location	LG01: 2316684 .. 2318264 (-)
Sequence length	1177
RNA-Seq Expression	Sed0018809.2
Synteny	Sed0018809.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTGCTCATTCCAGAGGTGTGGATCTTCGTTTATCCCCCTCTCTCTAAACTTTCCTTTTCGTTTTAGCCCTTTCTAGGGTTAGGGTTTCTCTGAATTCCATGGCCTCTTCCTCCGATGAGTTCCGGTGTTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCAAGCCTTAGAGAAGGCTTTCTCTTCCTATGGCGACATCGTTGAAGCCAAGGTCCGTTTGTGTTGTCGTCATCGTCGAGATCTGGATTTGTTCCATCCATTTTCTGATCTGTGACTCTGTGACTGTGTTTTGTGTTACTTTACTGCGATTACGTTCTTGATATGTTGATTTTATTACTCGATCTTGATCGGTACGTTCACCTTCATCTTGGTTACAGAGACGAGGAAACGATCGGTGTTTTTTGTTTTGTTTTCTGTTTTGATCTGCTGATTTTGTGTCTGATCTGCTTTTTTCGTTTGATTTCGATCCAGATCGTGAACGATCGTGAAACTGGAAGATCTAGGGGATTTGGATTCGTGACGTTTGCTGATGAGGAGTCCATGAGAAGCGCGATCGAAGCGATGAACGGTCAGAATCTTGACGGACGTAGCATCACCGTCAACGAGGCTCAGCAACGAGGCGGCGGCGGCGGCGGTGGAGGATACAGCCGTGGCGGAGGCGGAGGAGGTGGATACGGTGGACGCCGTGAAGGAGGCGGCGGCGGTGGATACAACCGTGGAGGCGGTGGCTATGGAGGTGGTGGAGGTGGATACGGAGGAGGCGGTGGTGGTTACGGTGGTGGACGTGACCGTGGCTACGGGGGCGGTGGTGGAGGATACGGTGGACGTCGTGAAGGAGGCGGCGGCGGTGGATCTGAAGGAGGAGGATGGAGAAGTTAAAAATCTGATTGCTATGGATCTTTGTTTCTTAGTATTAGTGTGATGAAAAAAAAGTCTTAGTAGTTTAATTTCGTTAAAGTTCATCTGGATTTGGATCTGTTCTTGTTTTGAGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCTTGTTATGCCGCTGAAAAAAAGTTCACATAAGAAAATGAAGTAGTTCTTCAGCTCTTCGTTCTCACATATTTCATCTATTTTTCTCACCTTTTCTCCTTTATATTTTGACCCTAATAATTATATTTGTATGTTATGAAAGGTGAATTGCTTTAGGGTTTTTTTTGTCGTTCTTATCTTGTTTACAGGTAGACAGAAAATATCTCTTGAGATTCGAGATATTTTTAATGCAATGTTGTCAGATACTTTTGCAATGATTCGGTTTTCTTTATTGGGCCCTCGTGGGTCTGCCATCTCGGGTTTCGTAGCGGACAAGTTGCCGTGGAATCTGATTTTTTTCATTTTGGAATATTCGGTTTTTGGGATATAGTTTGTCGTTTTCTTTGAGCGGCATAACTATTGGGCCTGGGCTGGAATTTCACGCATGGGCCTGTTTGCCTTTTTCTATAATTTGATGAGTGATTTGCAAGTTGTTAATTGTAAAGCATGTGGGTCTACTAATAATTGTTTTTACTTTATAAAAGATATTATGCCTTGTTTGGTGATTCA

mRNA sequence

TTGTGCTCATTCCAGAGGTGTGGATCTTCGTTTATCCCCCTCTCTCTAAACTTTCCTTTTCGTTTTAGCCCTTTCTAGGGTTAGGGTTTCTCTGAATTCCATGGCCTCTTCCTCCGATGAGTTCCGGTGTTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCAAGCCTTAGAGAAGGCTTTCTCTTCCTATGGCGACATCGTTGAAGCCAAGATCGTGAACGATCGTGAAACTGGAAGATCTAGGGGATTTGGATTCGTGACGTTTGCTGATGAGGAGTCCATGAGAAGCGCGATCGAAGCGATGAACGGTCAGAATCTTGACGGACGTAGCATCACCGTCAACGAGGCTCAGCAACGAGGCGGCGGCGGCGGCGGTGGAGGATACAGCCGTGGCGGAGGCGGAGGAGGTGGATACGGTGGACGCCGTGAAGGAGGCGGCGGCGGTGGATCTGAAGGAGGAGGATGGAGAAGTTAAAAATCTGATTGCTATGGATCTTTGTTTCTTAGTATTAGTGTGATGAAAAAAAAGTCTTAGTAGTTTAATTTCGTTAAAGTTCATCTGGATTTGGATCTGTTCTTGTTTTGAGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCTTGTTATGCCGCTGAAAAAAAGTTCACATAAGAAAATGAAGTAGTTCTTCAGCTCTTCGTTCTCACATATTTCATCTATTTTTCTCACCTTTTCTCCTTTATATTTTGACCCTAATAATTATATTTGTATGTTATGAAAGGTGAATTGCTTTAGGGTTTTTTTTGTCGTTCTTATCTTGTTTACAGGTAGACAGAAAATATCTCTTGAGATTCGAGATATTTTTAATGCAATGTTGTCAGATACTTTTGCAATGATTCGGTTTTCTTTATTGGGCCCTCGTGGGTCTGCCATCTCGGGTTTCGTAGCGGACAAGTTGCCGTGGAATCTGATTTTTTTCATTTTGGAATATTCGGTTTTTGGGATATAGTTTGTCGTTTTCTTTGAGCGGCATAACTATTGGGCCTGGGCTGGAATTTCACGCATGGGCCTGTTTGCCTTTTTCTATAATTTGATGAGTGATTTGCAAGTTGTTAATTGTAAAGCATGTGGGTCTACTAATAATTGTTTTTACTTTATAAAAGATATTATGCCTTGTTTGGTGATTCA

Coding sequence (CDS)

ATGGCCTCTTCCTCCGATGAGTTCCGGTGTTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCAAGCCTTAGAGAAGGCTTTCTCTTCCTATGGCGACATCGTTGAAGCCAAGATCGTGAACGATCGTGAAACTGGAAGATCTAGGGGATTTGGATTCGTGACGTTTGCTGATGAGGAGTCCATGAGAAGCGCGATCGAAGCGATGAACGGTCAGAATCTTGACGGACGTAGCATCACCGTCAACGAGGCTCAGCAACGAGGCGGCGGCGGCGGCGGTGGAGGATACAGCCGTGGCGGAGGCGGAGGAGGTGGATACGGTGGACGCCGTGAAGGAGGCGGCGGCGGTGGATCTGAAGGAGGAGGATGGAGAAGTTAA

Protein sequence

MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEGGGWRS

Homology

[Close]

BLAST of Sed0018809.2 vs. NCBI nr
Match: KAG6605080.1 (hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRREGGGGG + G
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GG 123
           GG
Sbjct: 121 GG 122

[Close]

BLAST of Sed0018809.2 vs. NCBI nr
Match: XP_022947194.1 (glycine-rich RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRREGGGGG + G
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GG 123
           GG
Sbjct: 121 GG 122

[Close]

BLAST of Sed0018809.2 vs. NCBI nr
Match: XP_023533100.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533101.1 glycine-rich RNA-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRREGGGGG + G
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GG 123
           GG
Sbjct: 121 GG 122

[Close]

BLAST of Sed0018809.2 vs. NCBI nr
Match: XP_038901242.1 (glycine-rich RNA-binding protein-like [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-45
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS EFRCFVGGLAWATDN ALEKAFS +GDIVEAKIVNDRETGRSRGFGFVTFA+EE
Sbjct: 1   MASSSVEFRCFVGGLAWATDNIALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRREGGGGGG   
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 G 122
           G
Sbjct: 121 G 121

[Close]

BLAST of Sed0018809.2 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 5.1e-44
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTFA+EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           SMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGY+RGGGGGGGYGGRREGGGGG + G
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GG 123
           GG
Sbjct: 121 GG 121

[Close]

BLAST of Sed0018809.2 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-35
Identity = 91/125 (72.80%), Postives = 103/125 (82.40%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AFS YG+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGG----GGGGGYGGRREGGGGG 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGGG   GG    GGGGGYGG   G GGG
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGG 120

Query: 121 GSEGG 122
           G EGG
Sbjct: 121 GREGG 125

[Close]

BLAST of Sed0018809.2 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.6e-35
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 7   EFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMRSAI 66
           E+RCFVGGLAWAT++++LE+AFS +GDI ++KI+NDRETGRSRGFGFVTF DE+SMR AI
Sbjct: 5   EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64

Query: 67  EAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGG---GGGGGYGGRREGGGGGG----SE 123
           E MNGQ LDGR+ITVNEAQ RG GGGGG    GG   GGGGGYGGRREGGGGGG     E
Sbjct: 65  EGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGGRRE 124

[Close]

BLAST of Sed0018809.2 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-34
Identity = 92/140 (65.71%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AF+ YGD++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGG---------------GGGGGYSRGGGGGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG G               GGGGGYS GGG  GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 YGGRREGGGGGGSEGGGWRS 126
            GGRREGGGG    GGG+ S
Sbjct: 121 GGGRREGGGGYSGGGGGYSS 140

[Close]

BLAST of Sed0018809.2 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-34
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MA++  E+RCFVGGLAWAT N++LE AF+SYG+I+++K++ DRETGRSRGFGFVTF+ E 
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY--SRGG------------GGGGGY 120
           SM  AIE MNG+ LDGR+ITVN+AQ RGGGGGGGGY   RGG            GGGGGY
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGYGGGGGY 120

Query: 121 GGRREGGGGGGSEGGGW 124
           GGRREGGGGG   GGG+
Sbjct: 121 GGRREGGGGGYGGGGGY 137

[Close]

BLAST of Sed0018809.2 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.4e-34
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD ++LE AFS +G++V++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGG--GGGGYGGRREGGGGGGS 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG G GGGG   GGG  GGGGYGG   G GGG  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRR 120

Query: 121 EGGGW 124
           EGGG+
Sbjct: 121 EGGGY 125

[Close]

BLAST of Sed0018809.2 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRREGGGGG + G
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGYNRG 120

Query: 121 GG 123
           GG
Sbjct: 121 GG 122

[Close]

BLAST of Sed0018809.2 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.2e-44
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYSRGGGGGGGYGGRREGGGGGGSE 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGGY+RGGGGGGGYGGRREGGGGGG  
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 GGG 123
            GG
Sbjct: 121 RGG 123

[Close]

BLAST of Sed0018809.2 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.7e-42
Identity = 109/125 (87.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF +E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSR---GGGGGGGYGGRREGGGGGG 120
           SMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGY+R   GGGGGGGYGGRREGGGGG 
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGGGGYGGRREGGGGGY 120

Query: 121 SEGGG 123
           + GGG
Sbjct: 121 NRGGG 124

[Close]

BLAST of Sed0018809.2 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.7e-42
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF +E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG    GGGGGGGYGGRREGGGGGG   
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GG 123
           GG
Sbjct: 121 GG 122

[Close]

BLAST of Sed0018809.2 vs. ExPASy TrEMBL
Match: A0A6J1L3C8 (glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.7e-40
Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYSR-GGGGGGGYGGRREGGGGGGS 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGGY+R GGGGGGGYGG   G GGGG 
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGGYGGGGGGYGGGGG 120

Query: 121 EGGG 123
            GGG
Sbjct: 121 YGGG 124

[Close]

BLAST of Sed0018809.2 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-36
Identity = 90/125 (72.00%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AF+ YGD++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGSEG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG   RGGG  GG GGRREGGGG    G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG--HRGGGSYGGGGGRREGGGGYSGGG 120

Query: 121 GGWRS 126
           GG+ S
Sbjct: 121 GGYSS 123

[Close]

BLAST of Sed0018809.2 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 147.5 bits (371), Expect = 7.1e-36
Identity = 92/140 (65.71%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AF+ YGD++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGG---------------GGGGGYSRGGGGGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG G               GGGGGYS GGG  GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 YGGRREGGGGGGSEGGGWRS 126
            GGRREGGGG    GGG+ S
Sbjct: 121 GGGRREGGGGYSGGGGGYSS 140

[Close]

BLAST of Sed0018809.2 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-31
Identity = 62/90 (68.89%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 4  SSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMR 63
          S  E+RCFVGGLAWAT+++ L++ FS +GD++++KI+NDRE+GRSRGFGFVTF DE++MR
Sbjct: 2  SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64 SAIEAMNGQNLDGRSITVNEAQQRGGGGGG 94
           AIE MNG+ LDGR ITVNEAQ RG GGGG
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of Sed0018809.2 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 131.0 bits (328), Expect = 6.9e-31
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 4   SSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMR 63
           S  E+RCFVGGLAWAT+++ L++ FS +GD++++KI+NDRE+GRSRGFGFVTF DE++MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGG---GYGGRREGGGGGGSEG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGGG  RGG GGG   G GG   GGGGGG  G
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGG--RGGSGGGYRSGGGGGYSGGGGGGYSG 121

[Close]

BLAST of Sed0018809.2 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 131.0 bits (328), Expect = 6.9e-31
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 4   SSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMR 63
           S  E+RCFVGGLAWAT+++ L++ FS +GD++++KI+NDRE+GRSRGFGFVTF DE++MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGG---GYGGRREGGGGGGSEG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGGG  RGG GGG   G GG   GGGGGG  G
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGG--RGGSGGGYRSGGGGGYSGGGGGGYSG 121

The following BLAST results are available for this feature:

BLAST of Sed0018809.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605080.1	2.1e-45	90.98	hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022947194.1	2.1e-45	90.98	glycine-rich RNA-binding protein 1-like [Cucurbita moschata]	[more]
XP_023533100.1	2.1e-45	90.98	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
XP_038901242.1	7.8e-45	91.74	glycine-rich RNA-binding protein-like [Benincasa hispida]	[more]
XP_023512522.1	5.1e-44	90.98	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0018809.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49310	2.0e-35	72.80	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03878	7.6e-35	73.98	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
Q03250	1.0e-34	65.71	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
P10979	2.9e-34	65.69	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]
P49311	8.4e-34	71.20	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Sed0018809.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G631	1.0e-45	90.98	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1L652	4.2e-44	90.24	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1JGK0	6.7e-42	87.20	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]
A0A6J1FRL7	6.7e-42	87.70	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1L3C8	3.7e-40	87.10	glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X2 OS=Cuc...	[more]

BLAST of Sed0018809.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.2	1.9e-36	72.00	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.1	7.1e-36	65.71	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.3	3.1e-31	68.89	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.1	6.9e-31	67.21	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	6.9e-31	67.21	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 2.9E-29 score: 113.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 6.9E-25 score: 86.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 20.115877
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..122 e-value: 6.3E-35 score: 122.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..125
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..122
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..122
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0018809	Sed0018809	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018809.2-exon	Sed0018809.2-exon-LG01:2316684..2317423	exon
Sed0018809.2-exon	Sed0018809.2-exon-LG01:2317568..2317790	exon
Sed0018809.2-exon	Sed0018809.2-exon-LG01:2318051..2318264	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018809.2-three_prime_utr	Sed0018809.2-three_prime_utr-LG01:2316684..2317382	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018809.2-cds	Sed0018809.2-cds-LG01:2317383..2317423	CDS
Sed0018809.2-cds	Sed0018809.2-cds-LG01:2317568..2317790	CDS
Sed0018809.2-cds	Sed0018809.2-cds-LG01:2318051..2318164	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018809.2-five_prime_utr	Sed0018809.2-five_prime_utr-LG01:2318165..2318264	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0018809.2	Sed0018809.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005198	structural molecule activity