Sed0018809 (gene) Chayote v1

Overview


Name	Sed0018809
Type	gene
Organism	Sechium edule (Chayote v1)
Description	glycine-rich RNA-binding protein-like
Location	LG01: 2316684 .. 2318264 (-)
RNA-Seq Expression	Sed0018809
Synteny	Sed0018809

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTGCTCATTCCAGAGGTGTGGATCTTCGTTTATCCCCCTCTCTCTAAACTTTCCTTTTCGTTTTAGCCCTTTCTAGGGTTAGGGTTTCTCTGAATTCCATGGCCTCTTCCTCCGATGAGTTCCGGTGTTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCAAGCCTTAGAGAAGGCTTTCTCTTCCTATGGCGACATCGTTGAAGCCAAGGTCCGTTTGTGTTGTCGTCATCGTCGAGATCTGGATTTGTTCCATCCATTTTCTGATCTGTGACTCTGTGACTGTGTTTTGTGTTACTTTACTGCGATTACGTTCTTGATATGTTGATTTTATTACTCGATCTTGATCGGTACGTTCACCTTCATCTTGGTTACAGAGACGAGGAAACGATCGGTGTTTTTTGTTTTGTTTTCTGTTTTGATCTGCTGATTTTGTGTCTGATCTGCTTTTTTCGTTTGATTTCGATCCAGATCGTGAACGATCGTGAAACTGGAAGATCTAGGGGATTTGGATTCGTGACGTTTGCTGATGAGGAGTCCATGAGAAGCGCGATCGAAGCGATGAACGGTCAGAATCTTGACGGACGTAGCATCACCGTCAACGAGGCTCAGCAACGAGGCGGCGGCGGCGGCGGTGGAGGATACAGCCGTGGCGGAGGCGGAGGAGGTGGATACGGTGGACGCCGTGAAGGAGGCGGCGGCGGTGGATACAACCGTGGAGGCGGTGGCTATGGAGGTGGTGGAGGTGGATACGGAGGAGGCGGTGGTGGTTACGGTGGTGGACGTGACCGTGGCTACGGGGGCGGTGGTGGAGGATACGGTGGACGTCGTGAAGGAGGCGGCGGCGGTGGATCTGAAGGAGGAGGATGGAGAAGTTAAAAATCTGATTGCTATGGATCTTTGTTTCTTAGTATTAGTGTGATGAAAAAAAAGTCTTAGTAGTTTAATTTCGTTAAAGTTCATCTGGATTTGGATCTGTTCTTGTTTTGAGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCTTGTTATGCCGCTGAAAAAAAGTTCACATAAGAAAATGAAGTAGTTCTTCAGCTCTTCGTTCTCACATATTTCATCTATTTTTCTCACCTTTTCTCCTTTATATTTTGACCCTAATAATTATATTTGTATGTTATGAAAGGTGAATTGCTTTAGGGTTTTTTTTGTCGTTCTTATCTTGTTTACAGGTAGACAGAAAATATCTCTTGAGATTCGAGATATTTTTAATGCAATGTTGTCAGATACTTTTGCAATGATTCGGTTTTCTTTATTGGGCCCTCGTGGGTCTGCCATCTCGGGTTTCGTAGCGGACAAGTTGCCGTGGAATCTGATTTTTTTCATTTTGGAATATTCGGTTTTTGGGATATAGTTTGTCGTTTTCTTTGAGCGGCATAACTATTGGGCCTGGGCTGGAATTTCACGCATGGGCCTGTTTGCCTTTTTCTATAATTTGATGAGTGATTTGCAAGTTGTTAATTGTAAAGCATGTGGGTCTACTAATAATTGTTTTTACTTTATAAAAGATATTATGCCTTGTTTGGTGATTCA

mRNA sequence

TTGTGCTCATTCCAGAGGTGTGGATCTTCGTTTATCCCCCTCTCTCTAAACTTTCCTTTTCGTTTTAGCCCTTTCTAGGGTTAGGGTTTCTCTGAATTCCATGGCCTCTTCCTCCGATGAGTTCCGGTGTTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCAAGCCTTAGAGAAGGCTTTCTCTTCCTATGGCGACATCGTTGAAGCCAAGATCGTGAACGATCGTGAAACTGGAAGATCTAGGGGATTTGGATTCGTGACGTTTGCTGATGAGGAGTCCATGAGAAGCGCGATCGAAGCGATGAACGGTCAGAATCTTGACGGACGTAGCATCACCGTCAACGAGGCTCAGCAACGAGGCGGCGGCGGCGGCGGTGGAGGATACAGCCGTGGCGGAGGCGGAGGAGGTGGATACGGTGGACGCCGTGAAGGAGGCGGCGGCGGTGGATACAACCGTGGAGGCGGTGGCTATGGAGGTGGTGGAGGTGGATACGGAGGAGGCGGTGGTGGTTACGGTGGTGGACGTGACCGTGGCTACGGGGGCGGTGGTGGAGGATACGGTGGACGTCGTGAAGGAGGCGGCGGCGGTGGATCTGAAGGAGGAGGATGGAGAAGTTAAAAATCTGATTGCTATGGATCTTTGTTTCTTAGTATTAGTGTGATGAAAAAAAAGTCTTAGTAGTTTAATTTCGTTAAAGTTCATCTGGATTTGGATCTGTTCTTGTTTTGAGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCTTGTTATGCCGCTGAAAAAAAGTTCACATAAGAAAATGAAGTAGTTCTTCAGCTCTTCGTTCTCACATATTTCATCTATTTTTCTCACCTTTTCTCCTTTATATTTTGACCCTAATAATTATATTTGTATGTTATGAAAGGTGAATTGCTTTAGGGTTTTTTTTGTCGTTCTTATCTTGTTTACAGGTAGACAGAAAATATCTCTTGAGATTCGAGATATTTTTAATGCAATGTTGTCAGATACTTTTGCAATGATTCGGTTTTCTTTATTGGGCCCTCGTGGGTCTGCCATCTCGGGTTTCGTAGCGGACAAGTTGCCGTGGAATCTGATTTTTTTCATTTTGGAATATTCGGTTTTTGGGATATAGTTTGTCGTTTTCTTTGAGCGGCATAACTATTGGGCCTGGGCTGGAATTTCACGCATGGGCCTGTTTGCCTTTTTCTATAATTTGATGAGTGATTTGCAAGTTGTTAATTGTAAAGCATGTGGGTCTACTAATAATTGTTTTTACTTTATAAAAGATATTATGCCTTGTTTGGTGATTCA

Coding sequence (CDS)

ATGGCCTCTTCCTCCGATGAGTTCCGGTGTTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCAAGCCTTAGAGAAGGCTTTCTCTTCCTATGGCGACATCGTTGAAGCCAAGATCGTGAACGATCGTGAAACTGGAAGATCTAGGGGATTTGGATTCGTGACGTTTGCTGATGAGGAGTCCATGAGAAGCGCGATCGAAGCGATGAACGGTCAGAATCTTGACGGACGTAGCATCACCGTCAACGAGGCTCAGCAACGAGGCGGCGGCGGCGGCGGTGGAGGATACAGCCGTGGCGGAGGCGGAGGAGGTGGATACGGTGGACGCCGTGAAGGAGGCGGCGGCGGTGGATACAACCGTGGAGGCGGTGGCTATGGAGGTGGTGGAGGTGGATACGGAGGAGGCGGTGGTGGTTACGGTGGTGGACGTGACCGTGGCTACGGGGGCGGTGGTGGAGGATACGGTGGACGTCGTGAAGGAGGCGGCGGCGGTGGATCTGAAGGAGGAGGATGGAGAAGTTAA

Protein sequence

MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNRGGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGWRS

Homology

[Close]

BLAST of Sed0018809 vs. NCBI nr
Match: XP_023006868.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-55
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYSRGGGGGGGYGGRREGGGGGGYN 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGGY+RGGGGGGGYGGRREGGGGGGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGR-REGGGGGGSEGGGWRS 174
           RGGGGYGGGGGGY GGGGGYGGGRDRGYGGGGGG GGR + GGGGGG   GGWR+
Sbjct: 121 RGGGGYGGGGGGY-GGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of Sed0018809 vs. NCBI nr
Match: XP_022947194.1 (glycine-rich RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 6.8e-55
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRRE GGGGGYNR
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGR-REGGGGGGSEGGGWRS 174
           GGGGYGGGGGGY  GGGGYGGGRDRGYGGGGGG GGR + GGGGGG   GGWR+
Sbjct: 121 GGGGYGGGGGGY--GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of Sed0018809 vs. NCBI nr
Match: XP_023533100.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533101.1 glycine-rich RNA-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.7 bits (561), Expect = 9.8e-54
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRRE GGGGGYNR
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGWRS 174
           GGGGYGGGGGGY  GGGGYGGGRDRGYGGGGG  G  + GGGGGG   GGWR+
Sbjct: 121 GGGGYGGGGGGY--GGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGSEGGWRN 170

[Close]

BLAST of Sed0018809 vs. NCBI nr
Match: KAG6605080.1 (hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.4 bits (555), Expect = 4.9e-53
Identity = 155/175 (88.57%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRRE GGGGGYNR
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGR--REGGGGGGSEGGGWRS 174
           GGGGYGGGGGGY  GGGGYGGGRDRGYGGGGG  GGR  R GGGGGG   GGWR+
Sbjct: 121 GGGGYGGGGGGY--GGGGYGGGRDRGYGGGGGD-GGRYQRGGGGGGGGSEGGWRN 171

[Close]

BLAST of Sed0018809 vs. NCBI nr
Match: XP_038901242.1 (glycine-rich RNA-binding protein-like [Benincasa hispida])

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-51
Identity = 149/173 (86.13%), Postives = 154/173 (89.02%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS EFRCFVGGLAWATDN ALEKAFS +GDIVEAKIVNDRETGRSRGFGFVTFA+EE
Sbjct: 1   MASSSVEFRCFVGGLAWATDNIALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRREGGGGGGYNR
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGWRS 174
           G GGYGGG    G GGGGYGGGRDR YGGGGG  G R   GGGGG   GGWR+
Sbjct: 121 GSGGYGGG----GYGGGGYGGGRDRSYGGGGGDGGSRYSRGGGGGGSEGGWRN 169

[Close]

BLAST of Sed0018809 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.3e-36
Identity = 115/155 (74.19%), Postives = 128/155 (82.58%), Query Frame = 0


Query: 7   EFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMRSAI 66
           E+RCFVGGLAWAT++++LE+AFS +GDI ++KI+NDRETGRSRGFGFVTF DE+SMR AI
Sbjct: 5   EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64

Query: 67  EAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGG---GGGGGYGGRREGGGGGGYNRGGG 126
           E MNGQ LDGR+ITVNEAQ RG GGGGG    GG   GGGGGYGGRREGGGGGGY   GG
Sbjct: 65  EGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGY---GG 124

Query: 127 GYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRR 159
              GGGGGYGGGGGGYGG R+ G GG GGG GG R
Sbjct: 125 RREGGGGGYGGGGGGYGGRREGGDGGYGGGGGGSR 156

[Close]

BLAST of Sed0018809 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 123/177 (69.49%), Postives = 136/177 (76.84%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AFS YG+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG    G GGGGGY      GGGGGY  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG----GRGGGGGY----RSGGGGGYGG 120

Query: 121 GGGGYGGGG--GGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGG----SEGGGW 172
           GGGGYGGGG  GGY GGGGGY     RG GGGG G GGRR+GG GGG      GGGW
Sbjct: 121 GGGGYGGGGREGGYSGGGGGYS---SRGGGGGGYGGGGRRDGGEGGGYGGSGGGGGW 166

[Close]

BLAST of Sed0018809 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 122/180 (67.78%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AF+ YGD++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGG-----GGGGGY-GGRREGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG    GG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY---GGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGW 172
           GGG   GGGGY GGGGGY   GGGGG YGGGR      GGGGYGG   GG GG   GGGW
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE----GGGGYGGGEGGGYGGSGGGGGW 176

[Close]

BLAST of Sed0018809 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.0e-34
Identity = 124/176 (70.45%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD ++LE AFS +G++V++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGG--GGGGYGGRREGGGGGGY 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG G GGGG   GGG  GGGGYGG   GGG GG 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGG--GGGGYGGG 120

Query: 121 NRGGGGYGGGGGGY---GGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGW 172
            R GGGY GGGGGY   GGGGGGYGGG  R     GGGYGG  EGGG GG  GGGW
Sbjct: 121 RREGGGYSGGGGGYSSRGGGGGGYGGGGRR----DGGGYGG-GEGGGYGGGGGGGW 169

[Close]

BLAST of Sed0018809 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-33
Identity = 114/173 (65.90%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MA++  E+RCFVGGLAWAT N++LE AF+SYG+I+++K++ DRETGRSRGFGFVTF+ E 
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           SM  AIE MNG+ LDGR+ITVN+AQ RGGGGGGGGY  G GGGG  GGRR+GG GGG   
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGYGGG--- 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGG-GSEGGGWR 173
                GG GG   GGGGGY         GGGGGYGGRREGGGGG G  GGGWR
Sbjct: 121 -----GGYGGRREGGGGGY---------GGGGGYGGRREGGGGGYGGGGGGWR 156

[Close]

BLAST of Sed0018809 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.5e-55
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYSRGGGGGGGYGGRREGGGGGGYN 120
           +MRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGGY+RGGGGGGGYGGRREGGGGGGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGR-REGGGGGGSEGGGWRS 174
           RGGGGYGGGGGGY GGGGGYGGGRDRGYGGGGGG GGR + GGGGGG   GGWR+
Sbjct: 121 RGGGGYGGGGGGY-GGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of Sed0018809 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.3e-55
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF DEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGY+RGGGGGGGYGGRRE GGGGGYNR
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGR-REGGGGGGSEGGGWRS 174
           GGGGYGGGGGGY  GGGGYGGGRDRGYGGGGGG GGR + GGGGGG   GGWR+
Sbjct: 121 GGGGYGGGGGGY--GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of Sed0018809 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.4e-50
Identity = 149/175 (85.14%), Postives = 155/175 (88.57%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF +E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG    GGGGGGGYGGRREGGGGGGYNR
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEG--GGWRS 174
           GGGGYGGGGGGY  GGGGYGGGRDRGYGGGG G      GGGGGG  G  GGWR+
Sbjct: 121 GGGGYGGGGGGY--GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of Sed0018809 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.7e-48
Identity = 150/176 (85.23%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATDN ALEKAFSS+G+IVEAKIVNDRETGRSRGFGFVTF +E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSR---GGGGGGGYGGRREGGGGGG 120
           SMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGY+R   GGGGGGGYGGRRE GGGGG
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYNRGGGGGGGGGGYGGRRE-GGGGG 120

Query: 121 YNRGGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGWRS 174
           YNRGGGGYG GGGG G GGGGYGGGRDRGYGGG G  G R   GGGGGSE GGWR+
Sbjct: 121 YNRGGGGYGSGGGGGGYGGGGYGGGRDRGYGGGDG--GSRYNRGGGGGSE-GGWRN 171

[Close]

BLAST of Sed0018809 vs. ExPASy TrEMBL
Match: A0A1S3CE16 (glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.5e-47
Identity = 143/173 (82.66%), Postives = 156/173 (90.17%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MASSS E+RCFVGGLAWATD+ ALEKAFS +GDIVEAKIV+DRETGRSRGFGFVTF++E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVSDRETGRSRGFGFVTFSEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGGG  R GGGGGGYGGRR+GGGGGG++R
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGGGYR-GGGGGGYGGRRDGGGGGGFSR 120

Query: 121 GGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGWRS 174
           GGGGYGGGGGGY GGGGGYGGGRDRGYGGGGG  GGR   GGGGG   GGWR+
Sbjct: 121 GGGGYGGGGGGY-GGGGGYGGGRDRGYGGGGGYGGGRDNRGGGGGGSEGGWRN 171

[Close]

BLAST of Sed0018809 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-36
Identity = 118/174 (67.82%), Postives = 131/174 (75.29%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AF+ YGD++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNR 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG   RGGG  GG GGRRE         
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG--HRGGGSYGGGGGRRE--------- 120

Query: 121 GGGGYGGGGGGY---GGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGW 172
           GGGGY GGGGGY   GGGGG YGGGR      GGGGYGG   GG GG   GGGW
Sbjct: 121 GGGGYSGGGGGYSSRGGGGGSYGGGRRE----GGGGYGGGEGGGYGGSGGGGGW 159

[Close]

BLAST of Sed0018809 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 147.9 bits (372), Expect = 7.5e-36
Identity = 122/180 (67.78%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 1   MASSSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEE 60
           MAS   E+RCFVGGLAWATD++ALE AF+ YGD++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGG-----GGGGGY-GGRREGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG    GG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY---GGGGGGYGGGRDRGYGGGGGGYGGRREGGGGGGSEGGGW 172
           GGG   GGGGY GGGGGY   GGGGG YGGGR      GGGGYGG   GG GG   GGGW
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE----GGGGYGGGEGGGYGGSGGGGGW 176

[Close]

BLAST of Sed0018809 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-30
Identity = 110/170 (64.71%), Postives = 126/170 (74.12%), Query Frame = 0


Query: 4   SSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMR 63
           S  E+RCFVGGLAWAT+++ L++ FS +GD++++KI+NDRE+GRSRGFGFVTF DE++MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGG-------GGGYSRGGGGG--GGYGGRREGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGG       GGGY  GGGGG  GG GG   GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYNRGGGGYGGGGGGYGGGGGGYGGGRDRGYGGGGGGYGGRREGGGGG 165
           GGGY R  GGYG GG   GGGG GYGGG  R  GG GGG GG   GGGGG
Sbjct: 122 GGGYERRSGGYGSGG---GGGGRGYGGGGRREGGGYGGGDGGSYGGGGGG 168

[Close]

BLAST of Sed0018809 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-29
Identity = 89/137 (64.96%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 4   SSDEFRCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMR 63
           S  E+RCFVGGLAWAT+++ L++ FS +GD++++KI+NDRE+GRSRGFGFVTF DE++MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNRGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGGG    GG GGGY      GGGGGY+    
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGG---RGGSGGGY----RSGGGGGYS---- 121

Query: 124 GYGGGGGGYGGGGGGYG 141
             GGGGGGY GGGGG G
Sbjct: 122 --GGGGGGYSGGGGGGG 125

[Close]

BLAST of Sed0018809 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 97/169 (57.40%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 9   RCFVGGLAWATDNQALEKAFSSYGDIVEAKIVNDRETGRSRGFGFVTFADEESMRSAIEA 68
           + F+GG+A++ D  +L +AF+ YG++V+ +++ DRETGRSRGFGFVTF   E+  SAI+A
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRSITVNEAQQR--GGGGGGGGYSRGGGGGGGYGGRREGGGGGGYNRGGGGYG 128
           ++G++L GR + VN A  R  GGG GGGGY  GGGG GG GG   GGG GGY  G GGYG
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGGSGG--YGGGAGGYG-GSGGYG 160

Query: 129 GGGGGYGG-GGGGYGGGRDRGYGG-GGGGYGGRREG----GGGGGSEGG 170
           GG GGYGG  GGGYGG    GYGG G GGYGG   G    GGG GS GG
Sbjct: 161 GGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGG 206

The following BLAST results are available for this feature:

BLAST of Sed0018809 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006868.1	3.0e-55	89.71	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022947194.1	6.8e-55	89.08	glycine-rich RNA-binding protein 1-like [Cucurbita moschata]	[more]
XP_023533100.1	9.8e-54	87.86	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
KAG6605080.1	4.9e-53	88.57	hypothetical protein SDJN03_02397, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038901242.1	3.5e-51	86.13	glycine-rich RNA-binding protein-like [Benincasa hispida]	[more]

BLAST of Sed0018809 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03878	7.3e-36	74.19	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
P49310	1.1e-34	69.49	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03250	1.1e-34	67.78	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
P49311	9.0e-34	70.45	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
P10979	2.0e-33	65.90	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]

BLAST of Sed0018809 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L652	1.5e-55	89.71	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G631	3.3e-55	89.08	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1FRL7	2.4e-50	85.14	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1JGK0	8.7e-48	85.23	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]
A0A1S3CE16	1.5e-47	82.66	glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 ...	[more]

BLAST of Sed0018809 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.2	1.5e-36	67.82	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.1	7.5e-36	67.78	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	4.7e-30	64.71	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	3.1e-29	64.96	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	1.6e-17	57.40	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 2.9E-29 score: 113.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 6.9E-25 score: 86.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 20.115877
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..122 e-value: 6.3E-35 score: 122.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..125
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..122
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..122
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018809.1	Sed0018809.1	mRNA
Sed0018809.2	Sed0018809.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding