Sed0017847.1 (mRNA) Chayote v1

Overview
NameSed0017847.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG08: 35589630 .. 35591080 (-)
Sequence length207
RNA-Seq ExpressionSed0017847.1
SyntenySed0017847.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTAAAAATGCTTCTAGAATTCAGAATTCTAAGGCAAAATCCTCTTGTAAAGCTGGTGGATTTGTACAAGAAGGCAAAGGTAGGCTATATATTTTTGGCAGATGTATTGCTATGCTGCTTTGCTGGCATGATTGAATAACCCTATTATTTGTGTCATAAACCTCATTCATATGTTTTTGTTAGAAATTTTGTTTTTATTTTCCTTCTCTTTTCCTGTGTAATCTGAAGATCAATCTGTACATTTTACTGTAGTCTTTTGATTGATATGAAGGCTTTTCAAATTTTTTTAATCACAGTTTGTCCAATTGAGAATGGAATTGATCTTCAATAATGTATATACAATTGGACTTTGAGGGTATGCTCCCTTTAAAGTTTTGGATTCGAGACTCACCTGTGACATGTTTTCGGTGCTTGGCCTGTTGACGGGGGAGGTTACCTTTGTTTCGAAAAAACAATAATGTAAATACAAGATTGTATTATTATTTGGACAATAATTGATATGATGAGAGAATTATTAGTGAAACTCATTTAAAATCTAAGTTGAAGAAGACTTCTTAAAGCCCCTTTGATGGTGATGTTAACATAATTGTTAGTTGAGGAAAGTTCAGCACTGAGTTGCAAATTTGCCTCTGAACCCTCTTAAATTTTGTCTCGTTGAAAACAATTAGTTTTTTTAAAAAAAAAATGATATTTAGTCTGCGTAGTTTGTAAAAATTTAATCTCTACGGTTAGATAGCTAAAAAATAGTTTATGTCGTTTGTACATTAACTTTATATATTTAATTCATCAATAATTATAATTATTTTATAGGTTTTATCAAACAGTTAATTTTGTATTTTATTTTCATTTTTATATTAATTTAACAAGAGAGTGAACACTTTTGATTACTAGGTTATACATTATACTACTAAAATTATATTTGCTAGGTTATACATTATTCTTTTAAAGTTATACTCTAATTGGTACAATAATTTTCTTTTTATAAGCACATATTTCTAGCAAATTGAGTATACTATTTTTGCCTTATTTTACCTGTTTTAGCTGCGATACTGTAATGACAATTATATTGGTTGCAATCTGTGAGCCTGGAATTTTTTGTTTGGGCCCAATATCATTTAGGCCCAAATGTAAGATGGCAAGGTTGAAGCACAACAGCTATGAGAACCCCATTTTTTCTGAATTTTGAATAAATGTAAATAAGGAAGATAATACTATTATGTGAGAGTTCTTTATCACTCCATTGATAAAAGTATTTAGTCTCAATCTAAAGATATTGGAATTTGATTTTCCCTCCCTATATTGTTTAACTAAAAAAATAAGAAGAGGTTCTACAAAAACTAAAAGATAAAAAGAAAAGAAAAAATCTATCAATATATAGATCAAGTAAATTAATTTTTTTTAGAATAGTAAATGGGGCTTTTGTATGTATATTACAAAATGGATAA

mRNA sequence

ATGGAGATTAAAAATGCTTCTAGAATTCAGAATTCTAAGGCAAAATCCTCTTGTAAAGCTGGTGGATTTGTACAAGAAGGCAAAGGTAGGCTATATATTTTTGGCAGATGTATTAAAAGAAAAAATCTATCAATATATAGATCAAGTAAATTAATTTTTTTTAGAATAGTAAATGGGGCTTTTGTATGTATATTACAAAATGGATAA

Coding sequence (CDS)

ATGGAGATTAAAAATGCTTCTAGAATTCAGAATTCTAAGGCAAAATCCTCTTGTAAAGCTGGTGGATTTGTACAAGAAGGCAAAGGTAGGCTATATATTTTTGGCAGATGTATTAAAAGAAAAAATCTATCAATATATAGATCAAGTAAATTAATTTTTTTTAGAATAGTAAATGGGGCTTTTGTATGTATATTACAAAATGGATAA

Protein sequence

MEIKNASRIQNSKAKSSCKAGGFVQEGKGRLYIFGRCIKRKNLSIYRSSKLIFFRIVNGAFVCILQNG
Homology
[Close]
BLAST of Sed0017847.1 vs. NCBI nr
Match: KAG7019956.1 (hypothetical protein SDJN02_18923, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-06
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1  MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
          M++K  SRI+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 53 MKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCV 91

[Close]
BLAST of Sed0017847.1 vs. NCBI nr
Match: XP_016899613.1 (PREDICTED: uncharacterized protein LOC103496621 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1   MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
           M+I++ S I+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 140 MKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCV 178

[Close]
BLAST of Sed0017847.1 vs. ExPASy TrEMBL
Match: A0A0A0LTM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042190 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1  MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
          M+I++ S I+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 13 MKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCV 51

[Close]
BLAST of Sed0017847.1 vs. ExPASy TrEMBL
Match: A0A1S4DUH1 (uncharacterized protein LOC103496621 OS=Cucumis melo OX=3656 GN=LOC103496621 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1   MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
           M+I++ S I+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 140 MKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCV 178

The following BLAST results are available for this feature:
BLAST of Sed0017847.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019956.15.1e-0676.92hypothetical protein SDJN02_18923, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_016899613.11.1e-0574.36PREDICTED: uncharacterized protein LOC103496621 [Cucumis melo][more]
BLAST of Sed0017847.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0017847.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTM05.5e-0674.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042190 PE=4 SV=1[more]
A0A1S4DUH15.5e-0674.36uncharacterized protein LOC103496621 OS=Cucumis melo OX=3656 GN=LOC103496621 PE=... [more]
BLAST of Sed0017847.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 26..38
e-value: 4.8E-4
score: 19.9

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0017847Sed0017847gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0017847.1-cdsSed0017847.1-cds-LG08:35589630..35589722CDS
Sed0017847.1-cdsSed0017847.1-cds-LG08:35590967..35591080CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0017847.1-exonSed0017847.1-exon-LG08:35589630..35589722exon
Sed0017847.1-exonSed0017847.1-exon-LG08:35590967..35591080exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0017847.1Sed0017847.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008285 negative regulation of cell population proliferation
biological_process GO:0048367 shoot system development
cellular_component GO:0005886 plasma membrane