Sed0017847 (gene) Chayote v1

Overview


Name	Sed0017847
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 35589630 .. 35591080 (-)
RNA-Seq Expression	Sed0017847
Synteny	Sed0017847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTAAAAATGCTTCTAGAATTCAGAATTCTAAGGCAAAATCCTCTTGTAAAGCTGGTGGATTTGTACAAGAAGGCAAAGGTAGGCTATATATTTTTGGCAGATGTATTGCTATGCTGCTTTGCTGGCATGATTGAATAACCCTATTATTTGTGTCATAAACCTCATTCATATGTTTTTGTTAGAAATTTTGTTTTTATTTTCCTTCTCTTTTCCTGTGTAATCTGAAGATCAATCTGTACATTTTACTGTAGTCTTTTGATTGATATGAAGGCTTTTCAAATTTTTTTAATCACAGTTTGTCCAATTGAGAATGGAATTGATCTTCAATAATGTATATACAATTGGACTTTGAGGGTATGCTCCCTTTAAAGTTTTGGATTCGAGACTCACCTGTGACATGTTTTCGGTGCTTGGCCTGTTGACGGGGGAGGTTACCTTTGTTTCGAAAAAACAATAATGTAAATACAAGATTGTATTATTATTTGGACAATAATTGATATGATGAGAGAATTATTAGTGAAACTCATTTAAAATCTAAGTTGAAGAAGACTTCTTAAAGCCCCTTTGATGGTGATGTTAACATAATTGTTAGTTGAGGAAAGTTCAGCACTGAGTTGCAAATTTGCCTCTGAACCCTCTTAAATTTTGTCTCGTTGAAAACAATTAGTTTTTTTAAAAAAAAAATGATATTTAGTCTGCGTAGTTTGTAAAAATTTAATCTCTACGGTTAGATAGCTAAAAAATAGTTTATGTCGTTTGTACATTAACTTTATATATTTAATTCATCAATAATTATAATTATTTTATAGGTTTTATCAAACAGTTAATTTTGTATTTTATTTTCATTTTTATATTAATTTAACAAGAGAGTGAACACTTTTGATTACTAGGTTATACATTATACTACTAAAATTATATTTGCTAGGTTATACATTATTCTTTTAAAGTTATACTCTAATTGGTACAATAATTTTCTTTTTATAAGCACATATTTCTAGCAAATTGAGTATACTATTTTTGCCTTATTTTACCTGTTTTAGCTGCGATACTGTAATGACAATTATATTGGTTGCAATCTGTGAGCCTGGAATTTTTTGTTTGGGCCCAATATCATTTAGGCCCAAATGTAAGATGGCAAGGTTGAAGCACAACAGCTATGAGAACCCCATTTTTTCTGAATTTTGAATAAATGTAAATAAGGAAGATAATACTATTATGTGAGAGTTCTTTATCACTCCATTGATAAAAGTATTTAGTCTCAATCTAAAGATATTGGAATTTGATTTTCCCTCCCTATATTGTTTAACTAAAAAAATAAGAAGAGGTTCTACAAAAACTAAAAGATAAAAAGAAAAGAAAAAATCTATCAATATATAGATCAAGTAAATTAATTTTTTTTAGAATAGTAAATGGGGCTTTTGTATGTATATTACAAAATGGATAA

mRNA sequence

ATGGAGATTAAAAATGCTTCTAGAATTCAGAATTCTAAGGCAAAATCCTCTTGTAAAGCTGGTGGATTTGTACAAGAAGGCAAAGGTAGGCTATATATTTTTGGCAGATGTATTAAAAGAAAAAATCTATCAATATATAGATCAAGTAAATTAATTTTTTTTAGAATAGTAAATGGGGCTTTTGTATGTATATTACAAAATGGATAA

Coding sequence (CDS)

ATGGAGATTAAAAATGCTTCTAGAATTCAGAATTCTAAGGCAAAATCCTCTTGTAAAGCTGGTGGATTTGTACAAGAAGGCAAAGGTAGGCTATATATTTTTGGCAGATGTATTAAAAGAAAAAATCTATCAATATATAGATCAAGTAAATTAATTTTTTTTAGAATAGTAAATGGGGCTTTTGTATGTATATTACAAAATGGATAA

Protein sequence

MEIKNASRIQNSKAKSSCKAGGFVQEGKGRLYIFGRCIKRKNLSIYRSSKLIFFRIVNGAFVCILQNG

Homology

[Close]

BLAST of Sed0017847 vs. NCBI nr
Match: KAG7019956.1 (hypothetical protein SDJN02_18923, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-06
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
          M++K  SRI+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 53 MKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCV 91

[Close]

BLAST of Sed0017847 vs. NCBI nr
Match: XP_016899613.1 (PREDICTED: uncharacterized protein LOC103496621 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
           M+I++ S I+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 140 MKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCV 178

[Close]

BLAST of Sed0017847 vs. ExPASy TrEMBL
Match: A0A0A0LTM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042190 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
          M+I++ S I+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 13 MKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCV 51

[Close]

BLAST of Sed0017847 vs. ExPASy TrEMBL
Match: A0A1S4DUH1 (uncharacterized protein LOC103496621 OS=Cucumis melo OX=3656 GN=LOC103496621 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MEIKNASRIQNSKAKSSCK-AGGFVQEGKGRLYIFGRCI 39
           M+I++ S I+NSK KSSCK A GFVQEGKGRLYIFGRC+
Sbjct: 140 MKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCV 178

The following BLAST results are available for this feature:

BLAST of Sed0017847 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019956.1	5.1e-06	76.92	hypothetical protein SDJN02_18923, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_016899613.1	1.1e-05	74.36	PREDICTED: uncharacterized protein LOC103496621 [Cucumis melo]	[more]

BLAST of Sed0017847 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM0	5.5e-06	74.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042190 PE=4 SV=1	[more]
A0A1S4DUH1	5.5e-06	74.36	uncharacterized protein LOC103496621 OS=Cucumis melo OX=3656 GN=LOC103496621 PE=...	[more]

BLAST of Sed0017847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 26..38 e-value: 4.8E-4 score: 19.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017847.1	Sed0017847.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane