Sed0017376.1 (mRNA) Chayote v1

Overview


Name	Sed0017376.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 39787917 .. 39790554 (-)
Sequence length	754
RNA-Seq Expression	Sed0017376.1
Synteny	Sed0017376.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAACCCTAGAAAGCCATTTTTTCTCATCAAACGGGTTCGAGGCTCTCCAAGTCTCATGGGTTCATCTTAGGCAATTAACGATAACTTCATCTCTGCAGGTGTCTATGTTCTCATCGTTGCTTTGGGTCCTATTCTATTTGACTTCACGGTAACTACCTGTTCTATCTTGTTCTTAAATATTTAAGAGAATTTGTTGCTAGTGACTGAGAGGAATTTGTTGGTGAATTTCTTACTGGATTGGATAGTTTTTAGTTTGTGTCGATTGAACCCTTACAGATACTAGGATCATGGTAGTTCGAAGATTTATCAAGTTGTTGCGAGAGAATTAATTTTAAACTAGGAAGATTTTGATTTAGAAGCAGATTGATATTCTTTTAATCTCGCTGGAGTGCTTTATCTTTCTGTAGAGAATTATTCGAGGTTTGCATACAGAAATATATAGACATTTACACTTGCTTTTAATTTCATGTATATTTTGTTCGTTGGATTGCATTTGTGGAATGATCACCCATATCAAAATTTGTTACAGTCCTAATATTTTATTGAAATGTTAGGTTTGTACTTTGTAGAAATTTACAACTTCTATAGTAAATTTTCTTTAGTTTGTATTACTTTTTTTCTACTCATTCTTTATTCAATGGAAGAACACACTAATATATTTCAATTGCTAATGGCTCTGTTAATTAGTACAAGCTAAAGAAGTTGAACAAAAAATGCTGCACCATTGTGTCCTATTTAATCGGCCTATTATTATTAATAATTTTATTGAACAAACGAGCAACCTAAAGAATAGATGGAGAAATACATTTCAATTGCTAATGGTTCTATTAAGTTTTAAATTAGATTTCTGATTGTCGGTAACTCTAGAATTCATTGATTGTTTGATTCTGTTGAAGGTGCATTCAGAATAAGTATTGACTTTGCAGGGAGGGTATTCATCACGGACCCAATATGAAATTACTTGGGATCTTGAATTTATTGTCTCGGAGGTGCCTCAATGGTCTGCTCTTCTTTTTTTTCTTTTTTTCTTTTTTTCTCTCTTCATTCTACCTTTAACTTGATTTATGGAACAATATTCTTTATTTGGTTCTTTAAGCAATGTTGGTCCATATGGAGAACAAAGTGAAATTGAGACCCGATCCAAGATTCATTGGCCAAAGTAAGGCACATTTTTATCCATAGGTTTTGGGTGAAATTTCTATTTGGTCCTCATATTTCAAAATTAAGCACTTTTACTCTACTCAATTTTGATTCTTATGTGTCTAATGAGTTTTTTTTTTCACTTATTTTCTTTTAAAAGTAAAATCTAAGTCGGCCAAAATAGATACATTATCAATCTATTAGAATTTGAAGTATGCAAGTATGTCTAGTTAACATTTTGTTATGTCATTAACAGTTATATTGTCTTTAAAGACTAAAATTGAACACTATTGAAATGTGAGGGGTAAAAGTATTTGATTTTGAAAGTATGACATTTCTTTAGTACTTGGTTGTTAGTGGAACGATCTTAGTCATGCGGTATCCATATATGTTTAGTACAAGCTGAGTATTATTAGATTCTACTTGTTTTAAACGAGGGGCAATACTAGTTCCGGAGGATTCTGCTAATGGTCAAAGCCTTCTATGGTTAAACTTCTTTTAATATTTACATTAGGAAGATAGAATTGGACTTACTTTCTTTCTTTATTCTTTCTTTTACTCTTTCCTTTTTTACCAGTTGCTTTAATCCAAGTTATTTAGGCCCCGTTTCATAATCATTTGGTTTTTTTTTTTTGGTTTTTTAAAATTAAACTTATTTTACTCAAGTTTCCTACAATGTGCTTTCATCTTTCATACAATGTATCCATCATTCTTAGATAGGTGGGCATTGAAAATTGACGATCTCACATTGAAAAAGTAAAAAACATTTATTAGATAGGTGGACAACTCCTCTCATTGACCAATTGATTTTGAGATAAAACTCATACTATCTAATAGTTATACTATCCTTTCATAAACTACTCAAAGGGTCAAAGTTTTTTTTTTTATTTTTATTTTTTATGTTCCTATCATATTTGGTTCATTCTTAGGTTATCCAACCATTATTTGATTGTAGGTGTGTCAAGATAACTCAACAACTATTAAGCAAGGATAAATGTATGAAATACTTTCCCCAACTTGAAGAAGATTGCAAGAAAACAAGAAAGAAAGGTATTGTTTTCTACCTTAGTCATTATGTTAAGTACTTCAAATACATCTTTGAAAGTGATACATATAAATTTGTTGACTAAGGATTGTTATGTGGTTTAGGTACAAGTATGGAATAGGTTTAGTAACTTTCTATTTGTTGGTGTACGCAAAGTGTCAAAAAATGATTGGATTATTAATTTTGTAATGACTTAAAAGGGAATGTATGTAATGGGGCAACCACAATAGTTTTGGGGTTTAAATTTGTCTTTCACGATATTGTTGCACTGCAAAGGTGGTTTTGTGTGTATCATCTAAAATGATTTTGATTTAGTTTACTTGTTTTTGAAGTTTGAGGGCTACATTGGTTGGATTATGGAAACTGCCAATAATTCTTGAATTTTTCTACTCGTAAGCATTTCTTAGAGTTTTCTTCGAGGTTTGATACACTGCTTATAAATAATG

mRNA sequence

ATGGGAGGAACCCTAGAAAGCCATTTTTTCTCATCAAACGGGTTCGAGGCTCTCCAAGTCTCATGGGTTCATCTTAGGCAATTAACGATAACTTCATCTCTGCAGGTGTCTATGTTCTCATCGTTGCTTTGGGTCCTATTCTATTTGACTTCACGGGAGGGTATTCATCACGGACCCAATATGAAATTACTTGGGATCTTGAATTTATTGTCTCGGAGGTGTGTCAAGATAACTCAACAACTATTAAGCAAGGATAAATGTATGAAATACTTTCCCCAACTTGAAGAAGATTGCAAGAAAACAAGAAAGAAAGGTATTGTTTTCTACCTTAGTCATTATGTTAAGTACTTCAAATACATCTTTGAAAGTGATACATATAAATTTGTTGACTAAGGATTGTTATGTGGTTTAGGTACAAGTATGGAATAGGTTTAGTAACTTTCTATTTGTTGGTGTACGCAAAGTGTCAAAAAATGATTGGATTATTAATTTTGTAATGACTTAAAAGGGAATGTATGTAATGGGGCAACCACAATAGTTTTGGGGTTTAAATTTGTCTTTCACGATATTGTTGCACTGCAAAGGTGGTTTTGTGTGTATCATCTAAAATGATTTTGATTTAGTTTACTTGTTTTTGAAGTTTGAGGGCTACATTGGTTGGATTATGGAAACTGCCAATAATTCTTGAATTTTTCTACTCGTAAGCATTTCTTAGAGTTTTCTTCGAGGTTTGATACACTGCTTATAAATAATG

Coding sequence (CDS)

ATGGGAGGAACCCTAGAAAGCCATTTTTTCTCATCAAACGGGTTCGAGGCTCTCCAAGTCTCATGGGTTCATCTTAGGCAATTAACGATAACTTCATCTCTGCAGGTGTCTATGTTCTCATCGTTGCTTTGGGTCCTATTCTATTTGACTTCACGGGAGGGTATTCATCACGGACCCAATATGAAATTACTTGGGATCTTGAATTTATTGTCTCGGAGGTGTGTCAAGATAACTCAACAACTATTAAGCAAGGATAAATGTATGAAATACTTTCCCCAACTTGAAGAAGATTGCAAGAAAACAAGAAAGAAAGGTATTGTTTTCTACCTTAGTCATTATGTTAAGTACTTCAAATACATCTTTGAAAGTGATACATATAAATTTGTTGACTAA

Protein sequence

MGGTLESHFFSSNGFEALQVSWVHLRQLTITSSLQVSMFSSLLWVLFYLTSREGIHHGPNMKLLGILNLLSRRCVKITQQLLSKDKCMKYFPQLEEDCKKTRKKGIVFYLSHYVKYFKYIFESDTYKFVD

Homology

[Close]

BLAST of Sed0017376.1 vs. NCBI nr
Match: KAG6585828.1 (Sugar transporter ERD6-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 31 TSSLQVSMFSSLLWVLFYLTSREGIHHGPNMKLLGILNLLSR 73
          T SL + +FSSLLWVL  L SREGIHH PN +LLG L LLSR
Sbjct: 43 TPSLYLPVFSSLLWVLSSLASREGIHHRPNSQLLGTLGLLSR 84

The following BLAST results are available for this feature:

BLAST of Sed0017376.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585828.1	1.8e-04	69.05	Sugar transporter ERD6-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0017376.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017376.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017376.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0017376	Sed0017376	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017376.1-three_prime_utr	Sed0017376.1-three_prime_utr-LG05:39787917..39788277	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017376.1-exon	Sed0017376.1-exon-LG05:39787917..39788452	exon
Sed0017376.1-exon	Sed0017376.1-exon-LG05:39789559..39789621	exon
Sed0017376.1-exon	Sed0017376.1-exon-LG05:39790400..39790554	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017376.1-cds	Sed0017376.1-cds-LG05:39788278..39788452	CDS
Sed0017376.1-cds	Sed0017376.1-cds-LG05:39789559..39789621	CDS
Sed0017376.1-cds	Sed0017376.1-cds-LG05:39790400..39790554	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0017376.1	Sed0017376.1-protein	polypeptide