Sed0017376 (gene) Chayote v1

Overview


Name	Sed0017376
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 39787917 .. 39790554 (-)
RNA-Seq Expression	Sed0017376
Synteny	Sed0017376

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAACCCTAGAAAGCCATTTTTTCTCATCAAACGGGTTCGAGGCTCTCCAAGTCTCATGGGTTCATCTTAGGCAATTAACGATAACTTCATCTCTGCAGGTGTCTATGTTCTCATCGTTGCTTTGGGTCCTATTCTATTTGACTTCACGGTAACTACCTGTTCTATCTTGTTCTTAAATATTTAAGAGAATTTGTTGCTAGTGACTGAGAGGAATTTGTTGGTGAATTTCTTACTGGATTGGATAGTTTTTAGTTTGTGTCGATTGAACCCTTACAGATACTAGGATCATGGTAGTTCGAAGATTTATCAAGTTGTTGCGAGAGAATTAATTTTAAACTAGGAAGATTTTGATTTAGAAGCAGATTGATATTCTTTTAATCTCGCTGGAGTGCTTTATCTTTCTGTAGAGAATTATTCGAGGTTTGCATACAGAAATATATAGACATTTACACTTGCTTTTAATTTCATGTATATTTTGTTCGTTGGATTGCATTTGTGGAATGATCACCCATATCAAAATTTGTTACAGTCCTAATATTTTATTGAAATGTTAGGTTTGTACTTTGTAGAAATTTACAACTTCTATAGTAAATTTTCTTTAGTTTGTATTACTTTTTTTCTACTCATTCTTTATTCAATGGAAGAACACACTAATATATTTCAATTGCTAATGGCTCTGTTAATTAGTACAAGCTAAAGAAGTTGAACAAAAAATGCTGCACCATTGTGTCCTATTTAATCGGCCTATTATTATTAATAATTTTATTGAACAAACGAGCAACCTAAAGAATAGATGGAGAAATACATTTCAATTGCTAATGGTTCTATTAAGTTTTAAATTAGATTTCTGATTGTCGGTAACTCTAGAATTCATTGATTGTTTGATTCTGTTGAAGGTGCATTCAGAATAAGTATTGACTTTGCAGGGAGGGTATTCATCACGGACCCAATATGAAATTACTTGGGATCTTGAATTTATTGTCTCGGAGGTGCCTCAATGGTCTGCTCTTCTTTTTTTTCTTTTTTTCTTTTTTTCTCTCTTCATTCTACCTTTAACTTGATTTATGGAACAATATTCTTTATTTGGTTCTTTAAGCAATGTTGGTCCATATGGAGAACAAAGTGAAATTGAGACCCGATCCAAGATTCATTGGCCAAAGTAAGGCACATTTTTATCCATAGGTTTTGGGTGAAATTTCTATTTGGTCCTCATATTTCAAAATTAAGCACTTTTACTCTACTCAATTTTGATTCTTATGTGTCTAATGAGTTTTTTTTTTCACTTATTTTCTTTTAAAAGTAAAATCTAAGTCGGCCAAAATAGATACATTATCAATCTATTAGAATTTGAAGTATGCAAGTATGTCTAGTTAACATTTTGTTATGTCATTAACAGTTATATTGTCTTTAAAGACTAAAATTGAACACTATTGAAATGTGAGGGGTAAAAGTATTTGATTTTGAAAGTATGACATTTCTTTAGTACTTGGTTGTTAGTGGAACGATCTTAGTCATGCGGTATCCATATATGTTTAGTACAAGCTGAGTATTATTAGATTCTACTTGTTTTAAACGAGGGGCAATACTAGTTCCGGAGGATTCTGCTAATGGTCAAAGCCTTCTATGGTTAAACTTCTTTTAATATTTACATTAGGAAGATAGAATTGGACTTACTTTCTTTCTTTATTCTTTCTTTTACTCTTTCCTTTTTTACCAGTTGCTTTAATCCAAGTTATTTAGGCCCCGTTTCATAATCATTTGGTTTTTTTTTTTTGGTTTTTTAAAATTAAACTTATTTTACTCAAGTTTCCTACAATGTGCTTTCATCTTTCATACAATGTATCCATCATTCTTAGATAGGTGGGCATTGAAAATTGACGATCTCACATTGAAAAAGTAAAAAACATTTATTAGATAGGTGGACAACTCCTCTCATTGACCAATTGATTTTGAGATAAAACTCATACTATCTAATAGTTATACTATCCTTTCATAAACTACTCAAAGGGTCAAAGTTTTTTTTTTTATTTTTATTTTTTATGTTCCTATCATATTTGGTTCATTCTTAGGTTATCCAACCATTATTTGATTGTAGGTGTGTCAAGATAACTCAACAACTATTAAGCAAGGATAAATGTATGAAATACTTTCCCCAACTTGAAGAAGATTGCAAGAAAACAAGAAAGAAAGGTATTGTTTTCTACCTTAGTCATTATGTTAAGTACTTCAAATACATCTTTGAAAGTGATACATATAAATTTGTTGACTAAGGATTGTTATGTGGTTTAGGTACAAGTATGGAATAGGTTTAGTAACTTTCTATTTGTTGGTGTACGCAAAGTGTCAAAAAATGATTGGATTATTAATTTTGTAATGACTTAAAAGGGAATGTATGTAATGGGGCAACCACAATAGTTTTGGGGTTTAAATTTGTCTTTCACGATATTGTTGCACTGCAAAGGTGGTTTTGTGTGTATCATCTAAAATGATTTTGATTTAGTTTACTTGTTTTTGAAGTTTGAGGGCTACATTGGTTGGATTATGGAAACTGCCAATAATTCTTGAATTTTTCTACTCGTAAGCATTTCTTAGAGTTTTCTTCGAGGTTTGATACACTGCTTATAAATAATG

mRNA sequence

ATGGGAGGAACCCTAGAAAGCCATTTTTTCTCATCAAACGGGTTCGAGGCTCTCCAAGTCTCATGGGTTCATCTTAGGCAATTAACGATAACTTCATCTCTGCAGGTGTCTATGTTCTCATCGTTGCTTTGGGTCCTATTCTATTTGACTTCACGGGAGGGTATTCATCACGGACCCAATATGAAATTACTTGGGATCTTGAATTTATTGTCTCGGAGGTGTGTCAAGATAACTCAACAACTATTAAGCAAGGATAAATGTATGAAATACTTTCCCCAACTTGAAGAAGATTGCAAGAAAACAAGAAAGAAAGGTATTGTTTTCTACCTTAGTCATTATGTTAAGTACTTCAAATACATCTTTGAAAGTGATACATATAAATTTGTTGACTAAGGATTGTTATGTGGTTTAGGTACAAGTATGGAATAGGTTTAGTAACTTTCTATTTGTTGGTGTACGCAAAGTGTCAAAAAATGATTGGATTATTAATTTTGTAATGACTTAAAAGGGAATGTATGTAATGGGGCAACCACAATAGTTTTGGGGTTTAAATTTGTCTTTCACGATATTGTTGCACTGCAAAGGTGGTTTTGTGTGTATCATCTAAAATGATTTTGATTTAGTTTACTTGTTTTTGAAGTTTGAGGGCTACATTGGTTGGATTATGGAAACTGCCAATAATTCTTGAATTTTTCTACTCGTAAGCATTTCTTAGAGTTTTCTTCGAGGTTTGATACACTGCTTATAAATAATG

Coding sequence (CDS)

ATGGGAGGAACCCTAGAAAGCCATTTTTTCTCATCAAACGGGTTCGAGGCTCTCCAAGTCTCATGGGTTCATCTTAGGCAATTAACGATAACTTCATCTCTGCAGGTGTCTATGTTCTCATCGTTGCTTTGGGTCCTATTCTATTTGACTTCACGGGAGGGTATTCATCACGGACCCAATATGAAATTACTTGGGATCTTGAATTTATTGTCTCGGAGGTGTGTCAAGATAACTCAACAACTATTAAGCAAGGATAAATGTATGAAATACTTTCCCCAACTTGAAGAAGATTGCAAGAAAACAAGAAAGAAAGGTATTGTTTTCTACCTTAGTCATTATGTTAAGTACTTCAAATACATCTTTGAAAGTGATACATATAAATTTGTTGACTAA

Protein sequence

MGGTLESHFFSSNGFEALQVSWVHLRQLTITSSLQVSMFSSLLWVLFYLTSREGIHHGPNMKLLGILNLLSRRCVKITQQLLSKDKCMKYFPQLEEDCKKTRKKGIVFYLSHYVKYFKYIFESDTYKFVD

Homology

[Close]

BLAST of Sed0017376 vs. NCBI nr
Match: KAG6585828.1 (Sugar transporter ERD6-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 31 TSSLQVSMFSSLLWVLFYLTSREGIHHGPNMKLLGILNLLSR 73
          T SL + +FSSLLWVL  L SREGIHH PN +LLG L LLSR
Sbjct: 43 TPSLYLPVFSSLLWVLSSLASREGIHHRPNSQLLGTLGLLSR 84

The following BLAST results are available for this feature:

BLAST of Sed0017376 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585828.1	1.8e-04	69.05	Sugar transporter ERD6-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0017376 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017376 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017376 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017376.1	Sed0017376.1	mRNA