Sed0014302.1 (mRNA) Chayote v1

Overview


Name	Sed0014302.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	LG08: 919284 .. 919926 (+)
Sequence length	643
RNA-Seq Expression	Sed0014302.1
Synteny	Sed0014302.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATTTGTACAAAAATAATGATAAATAAATATAGTTTATAGAATTTTCGTCGGAGCCCCGATCCATTTGGTATAGGCAACTGTTGGGATATTTCGTTTCCCCTACAACAAGGCAAAGCCAAAATTGTGTGACGGCCAATTCACACGCCACATTTTGGCGCTCAAATAAAACCCATTTCGTCTCAGAAATTTTCCACAATTTTCCTCTCTTCACCTTTCGATCAGATTCTTGATCTCAAATCTTCACCGCCGCCTAAACCTCACTGGAATCAATCGATCCATCCATGGCCGGAACCGGCTCCTACGATTGGGCGGACCAGTGGGACTACACCGACTCCAACGACGTCGCCGCCGCAGACAACAAGAAGAAGAGCAGCGGCGCCACCGCCGGCAACAGCTCGGCGAAGTACAAGCAGAAGGTCGGCGAAGGCCTTGGTAAGACCAAAGCTGCGGCCTCTAATGGCGTCAAAAAGGTCAAAGAAGGAACCTCTCTCGGTTTTCAATGGATCAAAGATAAATACAACAAATCCGCTCGTAAGAATTAGATTTTTCCTTCGTATTCAATTTCTCTCTCGCTCTCTGTTTTCATTGTAGAATTCAATTTCTTTTGTTTTTCTTCTGTTGATTATATAGATCGTTACAT

mRNA sequence

CACATTTGTACAAAAATAATGATAAATAAATATAGTTTATAGAATTTTCGTCGGAGCCCCGATCCATTTGGTATAGGCAACTGTTGGGATATTTCGTTTCCCCTACAACAAGGCAAAGCCAAAATTGTGTGACGGCCAATTCACACGCCACATTTTGGCGCTCAAATAAAACCCATTTCGTCTCAGAAATTTTCCACAATTTTCCTCTCTTCACCTTTCGATCAGATTCTTGATCTCAAATCTTCACCGCCGCCTAAACCTCACTGGAATCAATCGATCCATCCATGGCCGGAACCGGCTCCTACGATTGGGCGGACCAGTGGGACTACACCGACTCCAACGACGTCGCCGCCGCAGACAACAAGAAGAAGAGCAGCGGCGCCACCGCCGGCAACAGCTCGGCGAAGTACAAGCAGAAGGTCGGCGAAGGCCTTGGTAAGACCAAAGCTGCGGCCTCTAATGGCGTCAAAAAGGTCAAAGAAGGAACCTCTCTCGGTTTTCAATGGATCAAAGATAAATACAACAAATCCGCTCGTAAGAATTAGATTTTTCCTTCGTATTCAATTTCTCTCTCGCTCTCTGTTTTCATTGTAGAATTCAATTTCTTTTGTTTTTCTTCTGTTGATTATATAGATCGTTACAT

Coding sequence (CDS)

ATGGCCGGAACCGGCTCCTACGATTGGGCGGACCAGTGGGACTACACCGACTCCAACGACGTCGCCGCCGCAGACAACAAGAAGAAGAGCAGCGGCGCCACCGCCGGCAACAGCTCGGCGAAGTACAAGCAGAAGGTCGGCGAAGGCCTTGGTAAGACCAAAGCTGCGGCCTCTAATGGCGTCAAAAAGGTCAAAGAAGGAACCTCTCTCGGTTTTCAATGGATCAAAGATAAATACAACAAATCCGCTCGTAAGAATTAG

Protein sequence

MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNGVKKVKEGTSLGFQWIKDKYNKSARKN

Homology

[Close]

BLAST of Sed0014302.1 vs. NCBI nr
Match: XP_023516550.1 (uncharacterized protein LOC111780400 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1   MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNG 60
           MAG+GSYDWADQWDY+DS DV   +NKKKS G   GN++ KYKQKVGEGLGKTKA ASNG
Sbjct: 39  MAGSGSYDWADQWDYSDSKDV-VTENKKKSGG---GNTTTKYKQKVGEGLGKTKAVASNG 98

Query: 61  VKKVKEGTSLGFQWIKDKYNKSARK 86
           VKKVKEGTSLGFQWIKDKYNK+A K
Sbjct: 99  VKKVKEGTSLGFQWIKDKYNKTAHK 119

[Close]

BLAST of Sed0014302.1 vs. NCBI nr
Match: XP_038879790.1 (uncharacterized protein LOC120071534 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 4.3e-26
Identity = 68/85 (80.00%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNG 60
          MA  GSYDWADQWDY DS DV   +NKKKS G   GNS+AKYKQKVGEGLGKTKA ASNG
Sbjct: 1  MAANGSYDWADQWDYNDSTDV-VTENKKKSGG---GNSTAKYKQKVGEGLGKTKAVASNG 60

Query: 61 VKKVKEGTSLGFQWIKDKYNKSARK 86
          VK+VKEGTSLGFQWIKDKYNK+A K
Sbjct: 61 VKRVKEGTSLGFQWIKDKYNKTAHK 81

[Close]

BLAST of Sed0014302.1 vs. NCBI nr
Match: XP_022988421.1 (uncharacterized protein LOC111485668 [Cucurbita maxima] >XP_022988422.1 uncharacterized protein LOC111485668 [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 7.3e-26
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNG 60
           MAG GSYDWADQWDY+DS DV   + KKKS G   GN++ KYKQKVGEGLGKTKA ASNG
Sbjct: 39  MAGNGSYDWADQWDYSDSKDV-VTETKKKSGG--GGNTTTKYKQKVGEGLGKTKAVASNG 98

Query: 61  VKKVKEGTSLGFQWIKDKYNKSARK 86
           VKKVKEGTSLGFQWIKDKYNK+A K
Sbjct: 99  VKKVKEGTSLGFQWIKDKYNKTAHK 120

[Close]

BLAST of Sed0014302.1 vs. NCBI nr
Match: KAG6589470.1 (Alpha-N-acetylglucosaminidase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 9.6e-26
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNG 60
           MAG GSYDWADQWDY+DS DV   +N KKS G   GN++ KYKQKVGEGLGKTKA ASNG
Sbjct: 82  MAGNGSYDWADQWDYSDSKDV-VTENTKKSGG---GNTTTKYKQKVGEGLGKTKAVASNG 141

Query: 61  VKKVKEGTSLGFQWIKDKYNKSARK 86
           VKKVKEGTSLGFQWIKDKYNK+A K
Sbjct: 142 VKKVKEGTSLGFQWIKDKYNKTAHK 162

[Close]

BLAST of Sed0014302.1 vs. NCBI nr
Match: XP_022921775.1 (uncharacterized protein LOC111429929 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 66/85 (77.65%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNG 60
          MAG GSYDWADQWDY+DS DV   +N KKS G   GN++ KYKQKVGEGLGKTKA ASNG
Sbjct: 1  MAGNGSYDWADQWDYSDSKDV-VTENTKKSGG---GNTTTKYKQKVGEGLGKTKAVASNG 60

Query: 61 VKKVKEGTSLGFQWIKDKYNKSARK 86
          VKKVK+GTSLGFQWIKDKYNK+A K
Sbjct: 61 VKKVKQGTSLGFQWIKDKYNKTAHK 81

[Close]

BLAST of Sed0014302.1 vs. ExPASy TrEMBL
Match: A0A6J1JCZ5 (uncharacterized protein LOC111485668 OS=Cucurbita maxima OX=3661 GN=LOC111485668 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNG 60
           MAG GSYDWADQWDY+DS DV   + KKKS G   GN++ KYKQKVGEGLGKTKA ASNG
Sbjct: 39  MAGNGSYDWADQWDYSDSKDV-VTETKKKSGG--GGNTTTKYKQKVGEGLGKTKAVASNG 98

Query: 61  VKKVKEGTSLGFQWIKDKYNKSARK 86
           VKKVKEGTSLGFQWIKDKYNK+A K
Sbjct: 99  VKKVKEGTSLGFQWIKDKYNKTAHK 120

[Close]

BLAST of Sed0014302.1 vs. ExPASy TrEMBL
Match: A0A6J1E6S2 (uncharacterized protein LOC111429929 OS=Cucurbita moschata OX=3662 GN=LOC111429929 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 66/85 (77.65%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MAGTGSYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNG 60
          MAG GSYDWADQWDY+DS DV   +N KKS G   GN++ KYKQKVGEGLGKTKA ASNG
Sbjct: 1  MAGNGSYDWADQWDYSDSKDV-VTENTKKSGG---GNTTTKYKQKVGEGLGKTKAVASNG 60

Query: 61 VKKVKEGTSLGFQWIKDKYNKSARK 86
          VKKVK+GTSLGFQWIKDKYNK+A K
Sbjct: 61 VKKVKQGTSLGFQWIKDKYNKTAHK 81

[Close]

BLAST of Sed0014302.1 vs. ExPASy TrEMBL
Match: A0A5A7UUQ6 (Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002040 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 67/80 (83.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 6  SYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNGVKKVK 65
          SYDWADQWDY DS DV   +NKKK SG + GNSSAKYKQKVGEGLGKTKA ASNGVKKVK
Sbjct: 8  SYDWADQWDYNDSADV-VTNNKKKISG-SGGNSSAKYKQKVGEGLGKTKAVASNGVKKVK 67

Query: 66 EGTSLGFQWIKDKYNKSARK 86
          EGTSLGFQWIKDKYNK+A K
Sbjct: 68 EGTSLGFQWIKDKYNKTAHK 85

[Close]

BLAST of Sed0014302.1 vs. ExPASy TrEMBL
Match: A0A1S3BW93 (uncharacterized protein LOC103493940 OS=Cucumis melo OX=3656 GN=LOC103493940 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 67/80 (83.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 6  SYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNGVKKVK 65
          SYDWADQWDY DS DV   +NKKK SG + GNSSAKYKQKVGEGLGKTKA ASNGVKKVK
Sbjct: 8  SYDWADQWDYNDSADV-VTNNKKKISG-SGGNSSAKYKQKVGEGLGKTKAVASNGVKKVK 67

Query: 66 EGTSLGFQWIKDKYNKSARK 86
          EGTSLGFQWIKDKYNK+A K
Sbjct: 68 EGTSLGFQWIKDKYNKTAHK 85

[Close]

BLAST of Sed0014302.1 vs. ExPASy TrEMBL
Match: A0A0A0LUC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005770 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.7e-25
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 6  SYDWADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNGVKKVK 65
          SYDWADQWDY+DS DV  +DNKKK+ G   GNSSAKYKQKVGEGLGKTK+ ASNGVKKVK
Sbjct: 8  SYDWADQWDYSDSTDV-VSDNKKKTGG---GNSSAKYKQKVGEGLGKTKSVASNGVKKVK 67

Query: 66 EGTSLGFQWIKDKYNKSARK 86
          EGTSLGFQWIK+KYNK+A K
Sbjct: 68 EGTSLGFQWIKEKYNKTAHK 83

[Close]

BLAST of Sed0014302.1 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 8.7e-17
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 9  WADQWDYTDSNDVAAADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNGVKKVKEGT 68
          WA+QW   DSN  ++    K + G   G +S+KYK+KVG GLGKTKAAAS+G+KKVK GT
Sbjct: 6  WAEQW---DSNQQSSG---KTTHGGEGGGASSKYKEKVGAGLGKTKAAASSGLKKVKIGT 65

Query: 69 SLGFQWIKDKYNKSARKN 87
          SLG  W+KDKYNK+  KN
Sbjct: 66 SLGLNWVKDKYNKTTTKN 77

[Close]

BLAST of Sed0014302.1 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 9  WADQWDYTDSNDVA-----AADNKKKSSGATAGNSSAKYKQKVGEGLGKTKAAASNGVKK 68
          WADQWD  +S D A      +    +SSG+ A +++ KYK+K+G+GL KTKA AS+G KK
Sbjct: 6  WADQWD--NSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGFKK 65

Query: 69 VKEGTSLGFQWIKDKYNKSARK 86
          +K G+++GF+W+KDKY+K+  K
Sbjct: 66 LKTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:

BLAST of Sed0014302.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516550.1	1.5e-26	80.00	uncharacterized protein LOC111780400 [Cucurbita pepo subsp. pepo]	[more]
XP_038879790.1	4.3e-26	80.00	uncharacterized protein LOC120071534 [Benincasa hispida]	[more]
XP_022988421.1	7.3e-26	78.82	uncharacterized protein LOC111485668 [Cucurbita maxima] >XP_022988422.1 uncharac...	[more]
KAG6589470.1	9.6e-26	78.82	Alpha-N-acetylglucosaminidase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022921775.1	2.1e-25	77.65	uncharacterized protein LOC111429929 [Cucurbita moschata]	[more]

BLAST of Sed0014302.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014302.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JCZ5	3.5e-26	78.82	uncharacterized protein LOC111485668 OS=Cucurbita maxima OX=3661 GN=LOC111485668...	[more]
A0A6J1E6S2	1.0e-25	77.65	uncharacterized protein LOC111429929 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A5A7UUQ6	3.9e-25	83.75	Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=C...	[more]
A0A1S3BW93	3.9e-25	83.75	uncharacterized protein LOC103493940 OS=Cucumis melo OX=3656 GN=LOC103493940 PE=...	[more]
A0A0A0LUC7	6.7e-25	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005770 PE=4 SV=1	[more]

BLAST of Sed0014302.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	8.7e-17	58.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	2.0e-13	48.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..47
None	No IPR available	PANTHER	PTHR33386:SF5	OS02G0740600 PROTEIN	coord: 7..84
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 7..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0014302	Sed0014302	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014302.1-five_prime_utr	Sed0014302.1-five_prime_utr-LG08:919284..919567	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014302.1-exon	Sed0014302.1-exon-LG08:919284..919926	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014302.1-cds	Sed0014302.1-cds-LG08:919568..919828	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014302.1-three_prime_utr	Sed0014302.1-three_prime_utr-LG08:919829..919926	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0014302.1	Sed0014302.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030639	polyketide biosynthetic process
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups