Sed0010982.1 (mRNA) Chayote v1

Overview


Name	Sed0010982.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	CLAVATA3/ESR-related protein
Location	LG04: 34937376 .. 34938250 (+)
Sequence length	875
RNA-Seq Expression	Sed0010982.1
Synteny	Sed0010982.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAATTAGTCTCTCATTGACAGATGCAAAAGCAAAGTGGCCAATAATTTCATCTTCCCAATGCCAATAAAACTCTCACTGTTCTCTCAAACAGTTCCTTTTTTTCTTATAAACCACACCTTTTTCTCCTCTTCCTCCTCAAAACCTAACCGCTCACCTTTTTCATGGATATTGATCTCTCCTTCGGCTTCTCGGGGGACGTCGCCATTACCGATCATCGTCATCGTCATCATCAGCTTCTTTCCACTCCCATTGATTCATGGCTAGACTAGAAAATTATTGTTATTTCTTAACTAATTCAGCAACAAAGTCTCAAGCTTGCTTGATCTTCCTCTTCCTACTCGTTCTCCTCCCGGTTGTTGTTCCTCGTCGTTTGTCGCCCTCAACGAGTACTCCTCGACCCCGTCCTCGTTCTTCCCCCGTGGTCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCTAGTGAGAGAACATTTCAGCAATTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAAGATTGAAAAAACAATGAAAGAGAGTTATATTAATGAAGGATTATTTGTATGGAATATTTTTATATACTTTTTTTTTCATTTTGGGTTTTGTTTTGTTATATTTTTAGTTTTGTTGTTGGAAATGGTTTATTGGGTATGTACATAGTAAGCAATAGTGTCCTATTTATGGATTATTTTTTCTGAACTTGCAAGATGTTATCACATGTGCTATATTATTAGATCACTTTCTGCTTCATCTTTAATTTCTTCTTGTTTTGGTAGAAAAATCTTGATCTCTGTTTCTAAATTGAACTTTGTGCTGTTTAGTTTAGAGGCTTTATGAGCCTTTTGTGGAGAC

mRNA sequence

GCCAATTAGTCTCTCATTGACAGATGCAAAAGCAAAGTGGCCAATAATTTCATCTTCCCAATGCCAATAAAACTCTCACTGTTCTCTCAAACAGTTCCTTTTTTTCTTATAAACCACACCTTTTTCTCCTCTTCCTCCTCAAAACCTAACCGCTCACCTTTTTCATGGATATTGATCTCTCCTTCGGCTTCTCGGGGGACGTCGCCATTACCGATCATCGTCATCGTCATCATCAGCTTCTTTCCACTCCCATTGATTCATGGCTAGACTAGAAAATTATTGTTATTTCTTAACTAATTCAGCAACAAAGTCTCAAGCTTGCTTGATCTTCCTCTTCCTACTCGTTCTCCTCCCGGTTGTTGTTCCTCGTCGTTTGTCGCCCTCAACGAGTACTCCTCGACCCCGTCCTCGTTCTTCCCCCGTGGTCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCTAGTGAGAGAACATTTCAGCAATTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAAGATTGAAAAAACAATGAAAGAGAGTTATATTAATGAAGGATTATTTGTATGGAATATTTTTATATACTTTTTTTTTCATTTTGGGTTTTGTTTTGTTATATTTTTAGTTTTGTTGTTGGAAATGGTTTATTGGGTATGTACATAGTAAGCAATAGTGTCCTATTTATGGATTATTTTTTCTGAACTTGCAAGATGTTATCACATGTGCTATATTATTAGATCACTTTCTGCTTCATCTTTAATTTCTTCTTGTTTTGGTAGAAAAATCTTGATCTCTGTTTCTAAATTGAACTTTGTGCTGTTTAGTTTAGAGGCTTTATGAGCCTTTTGTGGAGAC

Coding sequence (CDS)

ATGGCTAGACTAGAAAATTATTGTTATTTCTTAACTAATTCAGCAACAAAGTCTCAAGCTTGCTTGATCTTCCTCTTCCTACTCGTTCTCCTCCCGGTTGTTGTTCCTCGTCGTTTGTCGCCCTCAACGAGTACTCCTCGACCCCGTCCTCGTTCTTCCCCCGTGGTCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCTAGTGAGAGAACATTTCAGCAATTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

Protein sequence

MARLENYCYFLTNSATKSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQAFSSPYSSERTFQQFEAAMHEVPSGPNPTSNK

Homology

[Close]

BLAST of Sed0010982.1 vs. NCBI nr
Match: KAG6593788.1 (hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MARLENYCYFLTNSATKSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQ 60
          MARL+ + +  + ++TKS+AC  FLFLL+L         S S STP  RP SS + MEEQ
Sbjct: 1  MARLKEHYFSTSLTSTKSRAC-FFLFLLLLPYNFSTLPSSASASTP-SRPPSSSLAMEEQ 60

Query: 61 AFSSPYSSERTFQQFEAAMHEVPSGPNPTSNK 93
          AFSSPYSS+RT QQFEAAMHEVPSGPNPT+NK
Sbjct: 61 AFSSPYSSQRTLQQFEAAMHEVPSGPNPTTNK 90

[Close]

BLAST of Sed0010982.1 vs. NCBI nr
Match: KAG6574868.1 (CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 52/97 (53.61%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MARLE-NYCYFLTNSATKSQACLIFLFLLVLLPVVVPRRLSPS----TSTPRPRPRSSPV 60
          MA+ E NY      ++TKSQAC  FLFLLVLL + VP R S S     ST  P    S  
Sbjct: 1  MAKFEDNYFSTSLTTSTKSQAC-FFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSK 60

Query: 61 VMEEQAFSSPYSSERTFQQFEAAMHEVPSGPNPTSNK 93
           M EQAF  P        QFEA+MHEVPSGPNPTSNK
Sbjct: 61 AMAEQAFPRP--------QFEASMHEVPSGPNPTSNK 88

[Close]

BLAST of Sed0010982.1 vs. NCBI nr
Match: KGN61461.1 (hypothetical protein Csa_006135 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 42/76 (55.26%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 17 KSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQAFSSPYSSERTFQQFE 76
          KSQAC  FLFLLVLL +VVP R S   +TP  RP S+ + M                 FE
Sbjct: 10 KSQAC-FFLFLLVLLLLVVPHRCSTVPNTP-SRPPSNFMAM-----------------FE 66

Query: 77 AAMHEVPSGPNPTSNK 93
          AAMHEVPSGPNPTSNK
Sbjct: 70 AAMHEVPSGPNPTSNK 66

[Close]

BLAST of Sed0010982.1 vs. ExPASy TrEMBL
Match: A0A0A0LNB8 (CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.4e-06
Identity = 42/76 (55.26%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 17 KSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQAFSSPYSSERTFQQFE 76
          KSQAC  FLFLLVLL +VVP R S   +TP  RP S+ + M                 FE
Sbjct: 10 KSQAC-FFLFLLVLLLLVVPHRCSTVPNTP-SRPPSNFMAM-----------------FE 66

Query: 77 AAMHEVPSGPNPTSNK 93
          AAMHEVPSGPNPTSNK
Sbjct: 70 AAMHEVPSGPNPTSNK 66

The following BLAST results are available for this feature:

BLAST of Sed0010982.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593788.1	5.6e-16	61.96	hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6574868.1	3.9e-09	53.61	CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. ...	[more]
KGN61461.1	1.5e-05	55.26	hypothetical protein Csa_006135 [Cucumis sativus]	[more]

BLAST of Sed0010982.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010982.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNB8	7.4e-06	55.26	CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=...	[more]

BLAST of Sed0010982.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0010982	Sed0010982	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010982.1-five_prime_utr	Sed0010982.1-five_prime_utr-LG04:34937376..34937634	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010982.1-exon	Sed0010982.1-exon-LG04:34937376..34938250	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010982.1-cds	Sed0010982.1-cds-LG04:34937635..34937913	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010982.1-three_prime_utr	Sed0010982.1-three_prime_utr-LG04:34937914..34938250	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0010982.1	Sed0010982.1-protein	polypeptide