Sed0010982 (gene) Chayote v1

Overview
NameSed0010982
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCLAVATA3/ESR-related protein
LocationLG04: 34937376 .. 34938250 (+)
RNA-Seq ExpressionSed0010982
SyntenySed0010982
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAATTAGTCTCTCATTGACAGATGCAAAAGCAAAGTGGCCAATAATTTCATCTTCCCAATGCCAATAAAACTCTCACTGTTCTCTCAAACAGTTCCTTTTTTTCTTATAAACCACACCTTTTTCTCCTCTTCCTCCTCAAAACCTAACCGCTCACCTTTTTCATGGATATTGATCTCTCCTTCGGCTTCTCGGGGGACGTCGCCATTACCGATCATCGTCATCGTCATCATCAGCTTCTTTCCACTCCCATTGATTCATGGCTAGACTAGAAAATTATTGTTATTTCTTAACTAATTCAGCAACAAAGTCTCAAGCTTGCTTGATCTTCCTCTTCCTACTCGTTCTCCTCCCGGTTGTTGTTCCTCGTCGTTTGTCGCCCTCAACGAGTACTCCTCGACCCCGTCCTCGTTCTTCCCCCGTGGTCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCTAGTGAGAGAACATTTCAGCAATTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAAGATTGAAAAAACAATGAAAGAGAGTTATATTAATGAAGGATTATTTGTATGGAATATTTTTATATACTTTTTTTTTCATTTTGGGTTTTGTTTTGTTATATTTTTAGTTTTGTTGTTGGAAATGGTTTATTGGGTATGTACATAGTAAGCAATAGTGTCCTATTTATGGATTATTTTTTCTGAACTTGCAAGATGTTATCACATGTGCTATATTATTAGATCACTTTCTGCTTCATCTTTAATTTCTTCTTGTTTTGGTAGAAAAATCTTGATCTCTGTTTCTAAATTGAACTTTGTGCTGTTTAGTTTAGAGGCTTTATGAGCCTTTTGTGGAGAC

mRNA sequence

GCCAATTAGTCTCTCATTGACAGATGCAAAAGCAAAGTGGCCAATAATTTCATCTTCCCAATGCCAATAAAACTCTCACTGTTCTCTCAAACAGTTCCTTTTTTTCTTATAAACCACACCTTTTTCTCCTCTTCCTCCTCAAAACCTAACCGCTCACCTTTTTCATGGATATTGATCTCTCCTTCGGCTTCTCGGGGGACGTCGCCATTACCGATCATCGTCATCGTCATCATCAGCTTCTTTCCACTCCCATTGATTCATGGCTAGACTAGAAAATTATTGTTATTTCTTAACTAATTCAGCAACAAAGTCTCAAGCTTGCTTGATCTTCCTCTTCCTACTCGTTCTCCTCCCGGTTGTTGTTCCTCGTCGTTTGTCGCCCTCAACGAGTACTCCTCGACCCCGTCCTCGTTCTTCCCCCGTGGTCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCTAGTGAGAGAACATTTCAGCAATTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAAGATTGAAAAAACAATGAAAGAGAGTTATATTAATGAAGGATTATTTGTATGGAATATTTTTATATACTTTTTTTTTCATTTTGGGTTTTGTTTTGTTATATTTTTAGTTTTGTTGTTGGAAATGGTTTATTGGGTATGTACATAGTAAGCAATAGTGTCCTATTTATGGATTATTTTTTCTGAACTTGCAAGATGTTATCACATGTGCTATATTATTAGATCACTTTCTGCTTCATCTTTAATTTCTTCTTGTTTTGGTAGAAAAATCTTGATCTCTGTTTCTAAATTGAACTTTGTGCTGTTTAGTTTAGAGGCTTTATGAGCCTTTTGTGGAGAC

Coding sequence (CDS)

ATGGCTAGACTAGAAAATTATTGTTATTTCTTAACTAATTCAGCAACAAAGTCTCAAGCTTGCTTGATCTTCCTCTTCCTACTCGTTCTCCTCCCGGTTGTTGTTCCTCGTCGTTTGTCGCCCTCAACGAGTACTCCTCGACCCCGTCCTCGTTCTTCCCCCGTGGTCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCTAGTGAGAGAACATTTCAGCAATTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

Protein sequence

MARLENYCYFLTNSATKSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQAFSSPYSSERTFQQFEAAMHEVPSGPNPTSNK
Homology
BLAST of Sed0010982 vs. NCBI nr
Match: KAG6593788.1 (hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 1  MARLENYCYFLTNSATKSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQ 60
          MARL+ + +  + ++TKS+AC  FLFLL+L         S S STP  RP SS + MEEQ
Sbjct: 1  MARLKEHYFSTSLTSTKSRAC-FFLFLLLLPYNFSTLPSSASASTP-SRPPSSSLAMEEQ 60

Query: 61 AFSSPYSSERTFQQFEAAMHEVPSGPNPTSNK 93
          AFSSPYSS+RT QQFEAAMHEVPSGPNPT+NK
Sbjct: 61 AFSSPYSSQRTLQQFEAAMHEVPSGPNPTTNK 90

BLAST of Sed0010982 vs. NCBI nr
Match: KAG6574868.1 (CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 52/97 (53.61%), Postives = 57/97 (58.76%), Query Frame = 0

Query: 1  MARLE-NYCYFLTNSATKSQACLIFLFLLVLLPVVVPRRLSPS----TSTPRPRPRSSPV 60
          MA+ E NY      ++TKSQAC  FLFLLVLL + VP R S S     ST  P    S  
Sbjct: 1  MAKFEDNYFSTSLTTSTKSQAC-FFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSK 60

Query: 61 VMEEQAFSSPYSSERTFQQFEAAMHEVPSGPNPTSNK 93
           M EQAF  P        QFEA+MHEVPSGPNPTSNK
Sbjct: 61 AMAEQAFPRP--------QFEASMHEVPSGPNPTSNK 88

BLAST of Sed0010982 vs. NCBI nr
Match: KGN61461.1 (hypothetical protein Csa_006135 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 42/76 (55.26%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 17 KSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQAFSSPYSSERTFQQFE 76
          KSQAC  FLFLLVLL +VVP R S   +TP  RP S+ + M                 FE
Sbjct: 10 KSQAC-FFLFLLVLLLLVVPHRCSTVPNTP-SRPPSNFMAM-----------------FE 66

Query: 77 AAMHEVPSGPNPTSNK 93
          AAMHEVPSGPNPTSNK
Sbjct: 70 AAMHEVPSGPNPTSNK 66

BLAST of Sed0010982 vs. ExPASy TrEMBL
Match: A0A0A0LNB8 (CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.4e-06
Identity = 42/76 (55.26%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 17 KSQACLIFLFLLVLLPVVVPRRLSPSTSTPRPRPRSSPVVMEEQAFSSPYSSERTFQQFE 76
          KSQAC  FLFLLVLL +VVP R S   +TP  RP S+ + M                 FE
Sbjct: 10 KSQAC-FFLFLLVLLLLVVPHRCSTVPNTP-SRPPSNFMAM-----------------FE 66

Query: 77 AAMHEVPSGPNPTSNK 93
          AAMHEVPSGPNPTSNK
Sbjct: 70 AAMHEVPSGPNPTSNK 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6593788.15.6e-1661.96hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6574868.13.9e-0953.61CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. ... [more]
KGN61461.11.5e-0555.26hypothetical protein Csa_006135 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LNB87.4e-0655.26CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010982.1Sed0010982.1mRNA