Sed0008652.1 (mRNA) Chayote v1

Overview


Name	Sed0008652.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	F-box family protein
Location	LG13: 22884601 .. 22885715 (-)
Sequence length	1115
RNA-Seq Expression	Sed0008652.1
Synteny	Sed0008652.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGCGCAATACCAGGGTGGGGTTTTCACATTCCTCGAAAACAAACAGACCAAAAAAAAAAAAAAAAAAAAGTGTGATAATCAGAAGAAGACACAACGAGAAGACAGAGTTGGTCAATTGGGAGAAAAAAGCATGGAAGCGCATTCAATTCTCATCTCGTCGTCTTCGTAAACCTTCAAAAATTTATGCCATAAACTCTTAACCACTCCCAATTTCATACCCAATTTTCCAATTCCCCCAAAATTTCTCCCCAAATCGCCGATCTGAGATTTGCAGTTTCTGGGATTTTTCGAAGATGAAGCGCGGCGGCGACGGCGGAGGCGACGGGGATCGGAAGAAACAGAGGGCGGCGGAGGGTGAAATCAATTATGGGTTTGTGAATTTAGACGATGATTTGTTATTCGAGGTTTTGAAACATGTGGATGCAAGGACTCTGGCTATGGCGGGTTGTGTGAGCAAGCAATGGCACAAAACGGCGGAGGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCCAACACCGGCTGCGCCAACCAACAGCTCCGATCTGTCGTTCTAGCCCTCGGCGGCTTCCGCCGGCTCCACTCCCTCTTCATCTGGCCTCTGACCAAGTCCTCCTCGTCGGCGCTGGCGCCGTCTTGGTCTCCGTTTCCGGCCATGATCGGCTCCAAGCCGCCGGCGCGGTGGGGGAAGGACGAGGTTCATTTGTCGTTGTCGCTTCTCTCAATTCGTTACTATGAGAAGATGAATTTCAGTAACAGGGGAAGATGAGTGCTCTGTTTTGGATCGTCAAATTTTCATTTCTGGATTTGATTTTTCGACGTTGTTTTTTTTTTTTTTTTTTGGTTTTGTTTTGTTTAATTAGATGTGTATTTGATTTGGGGTTTGTATTTTATATAAATTTCTAACTTGTGTATTGTGATTATATGTTATATATATGAAGGGGAAGCAAAAGATTTAAGTGGGTTTTTGTTGAAATTTTGATGGCCAATAAATGTAAAAGGGAAGAGAAAGACAGATGTAAAAATGGGTGGGTTCGAGAATTTGAGGGCTAAAAATGGAATTATGGAAATGGAAATGAAAATGCCCCATAAGCTTGAAGACA

mRNA sequence

GAAGAAGCGCAATACCAGGGTGGGGTTTTCACATTCCTCGAAAACAAACAGACCAAAAAAAAAAAAAAAAAAAAGTGTGATAATCAGAAGAAGACACAACGAGAAGACAGAGTTGGTCAATTGGGAGAAAAAAGCATGGAAGCGCATTCAATTCTCATCTCGTCGTCTTCGTAAACCTTCAAAAATTTATGCCATAAACTCTTAACCACTCCCAATTTCATACCCAATTTTCCAATTCCCCCAAAATTTCTCCCCAAATCGCCGATCTGAGATTTGCAGTTTCTGGGATTTTTCGAAGATGAAGCGCGGCGGCGACGGCGGAGGCGACGGGGATCGGAAGAAACAGAGGGCGGCGGAGGGTGAAATCAATTATGGGTTTGTGAATTTAGACGATGATTTGTTATTCGAGGTTTTGAAACATGTGGATGCAAGGACTCTGGCTATGGCGGGTTGTGTGAGCAAGCAATGGCACAAAACGGCGGAGGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCCAACACCGGCTGCGCCAACCAACAGCTCCGATCTGTCGTTCTAGCCCTCGGCGGCTTCCGCCGGCTCCACTCCCTCTTCATCTGGCCTCTGACCAAGTCCTCCTCGTCGGCGCTGGCGCCGTCTTGGTCTCCGTTTCCGGCCATGATCGGCTCCAAGCCGCCGGCGCGGTGGGGGAAGGACGAGGTTCATTTGTCGTTGTCGCTTCTCTCAATTCGTTACTATGAGAAGATGAATTTCAGTAACAGGGGAAGATGAGTGCTCTGTTTTGGATCGTCAAATTTTCATTTCTGGATTTGATTTTTCGACGTTGTTTTTTTTTTTTTTTTTTGGTTTTGTTTTGTTTAATTAGATGTGTATTTGATTTGGGGTTTGTATTTTATATAAATTTCTAACTTGTGTATTGTGATTATATGTTATATATATGAAGGGGAAGCAAAAGATTTAAGTGGGTTTTTGTTGAAATTTTGATGGCCAATAAATGTAAAAGGGAAGAGAAAGACAGATGTAAAAATGGGTGGGTTCGAGAATTTGAGGGCTAAAAATGGAATTATGGAAATGGAAATGAAAATGCCCCATAAGCTTGAAGACA

Coding sequence (CDS)

ATGAAGCGCGGCGGCGACGGCGGAGGCGACGGGGATCGGAAGAAACAGAGGGCGGCGGAGGGTGAAATCAATTATGGGTTTGTGAATTTAGACGATGATTTGTTATTCGAGGTTTTGAAACATGTGGATGCAAGGACTCTGGCTATGGCGGGTTGTGTGAGCAAGCAATGGCACAAAACGGCGGAGGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCCAACACCGGCTGCGCCAACCAACAGCTCCGATCTGTCGTTCTAGCCCTCGGCGGCTTCCGCCGGCTCCACTCCCTCTTCATCTGGCCTCTGACCAAGTCCTCCTCGTCGGCGCTGGCGCCGTCTTGGTCTCCGTTTCCGGCCATGATCGGCTCCAAGCCGCCGGCGCGGTGGGGGAAGGACGAGGTTCATTTGTCGTTGTCGCTTCTCTCAATTCGTTACTATGAGAAGATGAATTTCAGTAACAGGGGAAGATGA

Protein sequence

MKRGGDGGGDGDRKKQRAAEGEINYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTKSSSSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Homology

[Close]

BLAST of Sed0008652.1 vs. NCBI nr
Match: XP_022151668.1 (F-box protein GID2 [Momordica charantia])

HSP 1 Score: 277.3 bits (708), Expect = 8.2e-71
Identity = 139/170 (81.76%), Postives = 142/170 (83.53%), Query Frame = 0


Query: 5   GDGGGDGDRKKQRAAEGEI-------NYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQW 64
           GDG GDGDRK  + +  E          GFVNLDD+LLFEVLKHVDARTLAMA CVSKQW
Sbjct: 8   GDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQW 67

Query: 65  HKTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTKSSSSALAP- 124
           HKTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK  SSA AP 
Sbjct: 68  HKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS 127

Query: 125 ------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 161
                 SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Sbjct: 128 SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 177

[Close]

BLAST of Sed0008652.1 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 131/174 (75.29%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 9   GDGDRKKQRAAEGEI-----------NYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQW 68
           GDGDRK  +    E              GF+NLDD+LLFEV KHVDARTLAMA CVSKQW
Sbjct: 8   GDGDRKTGKKPRAETQDCAGGGDPSDRTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQW 67

Query: 69  HKTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK--------- 128
           HKTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK         
Sbjct: 68  HKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSS 127

Query: 129 ---SSSSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG 160
              S+SS+ + SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Sbjct: 128 TSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG 181

[Close]

BLAST of Sed0008652.1 vs. NCBI nr
Match: XP_022937325.1 (F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 257.7 bits (657), Expect = 6.7e-65
Identity = 131/170 (77.06%), Postives = 139/170 (81.76%), Query Frame = 0


Query: 9   GDGDR---KKQRAAEGEIN-------YGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWH 68
           G GDR   KK RA   + +        GF+NLDD+LLFEV KHVDARTLAMA CVSKQWH
Sbjct: 8   GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWH 67

Query: 69  KTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK--------SS 128
           KTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK        SS
Sbjct: 68  KTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSTSS 127

Query: 129 SSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 161
           S++ +  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Sbjct: 128 SASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR 177

[Close]

BLAST of Sed0008652.1 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 131/183 (71.58%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 9   GDGDRKKQRAAEGEI-------------NYGFVNLDDDLLFEVLKHVDARTLAMAGCVSK 68
           G GDRK  +  + E                GF+NLDD+LLFEV KHVDARTLAMA CVSK
Sbjct: 8   GVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSK 67

Query: 69  QWHKTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK------- 128
           QWHKTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK       
Sbjct: 68  QWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSS 127

Query: 129 -----------SSSSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 161
                      S+SS+ + SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN
Sbjct: 128 SSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 187

[Close]

BLAST of Sed0008652.1 vs. NCBI nr
Match: XP_022977120.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 255.0 bits (650), Expect = 4.3e-64
Identity = 130/173 (75.14%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 9   GDGDR---KKQRAAEGEIN-------YGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWH 68
           G GDR   KK RA   + +        GF+NLDD+LLFEV KHVDARTLAMA CVSKQWH
Sbjct: 8   GKGDRKTEKKPRAVSHDCDGGGVSDKTGFLNLDDNLLFEVFKHVDARTLAMAACVSKQWH 67

Query: 69  KTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK---------- 128
           KTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK          
Sbjct: 68  KTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSS 127

Query: 129 -SSSSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 161
            SSS++ +  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Sbjct: 128 TSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFGSRGR 180

[Close]

BLAST of Sed0008652.1 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.5e-46
Identity = 93/154 (60.39%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 5   GDGGGDGDRKKQRAAEGEINYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWHKTAEDE 64
           GD   + ++K +   E EI  GF NLD++L++EVLKHVDA+TLAM+ CVSK WHKTA+DE
Sbjct: 12  GDAHNETNKKMKSTEEEEI--GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDE 71

Query: 65  RLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTKSSSSALAPSWSPFPAM 124
           RLWELICTRHW N GC   QLRSVVLALGGFRRLHSL++WPL+K +              
Sbjct: 72  RLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKPN-------------- 131

Query: 125 IGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 159
               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 132 ----PRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Sed0008652.1 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 78/183 (42.62%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 5   GDGGGDGDR--KKQR-------------------------------AAEGEINYGFVNLD 64
           GDGGG GD   K+QR                               A EGE      +L 
Sbjct: 19  GDGGGGGDEPAKRQRTDPSSSSSQGEASSSSQPPPQQQQEEQPPEDAGEGE-QPRVPDLG 78

Query: 65  DDLLFEVLKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCANQQLRSVVLA 124
           +DL+FEVL+  +ARTLA A CVS+ W + AEDERLWE  C R WAN G + +QLR+VVL+
Sbjct: 79  EDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLS 138

Query: 125 LGGFRRLHSLFIWPLTKSSSSALAPSWSPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYY 154
           LGGFRRLH+++I PL    +          P   G + PP R G+D+V LSLSL SI ++
Sbjct: 139 LGGFRRLHAVYIRPLQWRGAGV--------PRQQGRRQPPVRLGRDQVQLSLSLFSIGFF 192

[Close]

BLAST of Sed0008652.1 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 12  DRKKQRAAEGEINYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWHKTAEDERLWELIC 71
           + K+QR    ++    +N   D+L E+L+ +D  +L  A CV + W   A ++ +WE +C
Sbjct: 14  NNKRQRV--NQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELC 73

Query: 72  TRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTKSSSSALAPSWSPFPAMIGSKPPA 131
            R  +     +  LRSVV ALGG+R L+ L I P                  ++   P  
Sbjct: 74  FRQVSPR--PSLSLRSVVSALGGYRCLYFLCIRP------------------VLARLPKL 133

Query: 132 RWGKDEVHLSLSLLSIRYYEKM 154
            W +D++ LSLSL  + YYE++
Sbjct: 134 LWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Sed0008652.1 vs. ExPASy TrEMBL
Match: A0A6J1DCV3 (F-box protein GID2 OS=Momordica charantia OX=3673 GN=LOC111019550 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.9e-71
Identity = 139/170 (81.76%), Postives = 142/170 (83.53%), Query Frame = 0


Query: 5   GDGGGDGDRKKQRAAEGEI-------NYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQW 64
           GDG GDGDRK  + +  E          GFVNLDD+LLFEVLKHVDARTLAMA CVSKQW
Sbjct: 8   GDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQW 67

Query: 65  HKTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTKSSSSALAP- 124
           HKTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK  SSA AP 
Sbjct: 68  HKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS 127

Query: 125 ------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 161
                 SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Sbjct: 128 SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 177

[Close]

BLAST of Sed0008652.1 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.2e-65
Identity = 131/170 (77.06%), Postives = 139/170 (81.76%), Query Frame = 0


Query: 9   GDGDR---KKQRAAEGEIN-------YGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWH 68
           G GDR   KK RA   + +        GF+NLDD+LLFEV KHVDARTLAMA CVSKQWH
Sbjct: 8   GKGDRKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWH 67

Query: 69  KTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK--------SS 128
           KTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK        SS
Sbjct: 68  KTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSTSS 127

Query: 129 SSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 161
           S++ +  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Sbjct: 128 SASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRGR 177

[Close]

BLAST of Sed0008652.1 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 131/183 (71.58%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 9   GDGDRKKQRAAEGEI-------------NYGFVNLDDDLLFEVLKHVDARTLAMAGCVSK 68
           G GDRK  +  + E                GF+NLDD+LLFEV KHVDARTLAMA CVSK
Sbjct: 8   GVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSK 67

Query: 69  QWHKTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK------- 128
           QWHKTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK       
Sbjct: 68  QWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSS 127

Query: 129 -----------SSSSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 161
                      S+SS+ + SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN
Sbjct: 128 SSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 187

[Close]

BLAST of Sed0008652.1 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 131/183 (71.58%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 9   GDGDRKKQRAAEGEI-------------NYGFVNLDDDLLFEVLKHVDARTLAMAGCVSK 68
           G GDRK  +  + E                GF+NLDD+LLFEV KHVDARTLAMA CVSK
Sbjct: 8   GVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSK 67

Query: 69  QWHKTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK------- 128
           QWHKTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK       
Sbjct: 68  QWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSS 127

Query: 129 -----------SSSSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 161
                      S+SS+ + SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN
Sbjct: 128 SSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 187

[Close]

BLAST of Sed0008652.1 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 130/173 (75.14%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 9   GDGDR---KKQRAAEGEIN-------YGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWH 68
           G GDR   KK RA   + +        GF+NLDD+LLFEV KHVDARTLAMA CVSKQWH
Sbjct: 8   GKGDRKTEKKPRAVSHDCDGGGVSDKTGFLNLDDNLLFEVFKHVDARTLAMAACVSKQWH 67

Query: 69  KTAEDERLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTK---------- 128
           KTAEDERLWELICTRHWANTGC NQQLRSVVLALGGFRRLHSLFIWPLTK          
Sbjct: 68  KTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSS 127

Query: 129 -SSSSALAPSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 161
            SSS++ +  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Sbjct: 128 TSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFGSRGR 180

[Close]

BLAST of Sed0008652.1 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 185.3 bits (469), Expect = 3.9e-47
Identity = 93/154 (60.39%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 5   GDGGGDGDRKKQRAAEGEINYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWHKTAEDE 64
           GD   + ++K +   E EI  GF NLD++L++EVLKHVDA+TLAM+ CVSK WHKTA+DE
Sbjct: 12  GDAHNETNKKMKSTEEEEI--GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDE 71

Query: 65  RLWELICTRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTKSSSSALAPSWSPFPAM 124
           RLWELICTRHW N GC   QLRSVVLALGGFRRLHSL++WPL+K +              
Sbjct: 72  RLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKPN-------------- 131

Query: 125 IGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 159
               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 132 ----PRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Sed0008652.1 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 74.3 bits (181), Expect = 9.8e-14
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 12  DRKKQRAAEGEINYGFVNLDDDLLFEVLKHVDARTLAMAGCVSKQWHKTAEDERLWELIC 71
           + K+QR    ++    +N   D+L E+L+ +D  +L  A CV + W   A ++ +WE +C
Sbjct: 14  NNKRQRV--NQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELC 73

Query: 72  TRHWANTGCANQQLRSVVLALGGFRRLHSLFIWPLTKSSSSALAPSWSPFPAMIGSKPPA 131
            R  +     +  LRSVV ALGG+R L+ L I P                  ++   P  
Sbjct: 74  FRQVSPR--PSLSLRSVVSALGGYRCLYFLCIRP------------------VLARLPKL 133

Query: 132 RWGKDEVHLSLSLLSIRYYEKM 154
            W +D++ LSLSL  + YYE++
Sbjct: 134 LWTRDQLQLSLSLYCVHYYERL 133

The following BLAST results are available for this feature:

BLAST of Sed0008652.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151668.1	8.2e-71	81.76	F-box protein GID2 [Momordica charantia]	[more]
XP_038900230.1	1.3e-65	75.29	F-box protein GID2 [Benincasa hispida]	[more]
XP_022937325.1	6.7e-65	77.06	F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-...	[more]
XP_008452610.1	2.5e-64	71.58	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]
XP_022977120.1	4.3e-64	75.14	F-box protein GID2-like [Cucurbita maxima]	[more]

BLAST of Sed0008652.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	5.5e-46	60.39	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	4.0e-28	42.62	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	1.4e-12	30.99	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Sed0008652.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCV3	3.9e-71	81.76	F-box protein GID2 OS=Momordica charantia OX=3673 GN=LOC111019550 PE=4 SV=1	[more]
A0A6J1FA22	3.2e-65	77.06	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]
A0A5A7VFE5	1.2e-64	71.58	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	1.2e-64	71.58	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A6J1ILD7	2.1e-64	75.14	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]

BLAST of Sed0008652.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	3.9e-47	60.39	F-box family protein	[more]
AT5G48170.1	9.8e-14	30.99	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 30..70 e-value: 0.0035 score: 26.6
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 29..71 e-value: 1.9E-7 score: 30.8
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 24..70 score: 9.497469
None	No IPR available	GENE3D	1.20.1280.50		coord: 20..118 e-value: 2.7E-11 score: 45.2
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 9..155
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 9..155
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 27..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0008652	Sed0008652	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008652.1-three_prime_utr	Sed0008652.1-three_prime_utr-LG13:22884601..22884934	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008652.1-exon	Sed0008652.1-exon-LG13:22884601..22885715	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008652.1-cds	Sed0008652.1-cds-LG13:22884935..22885417	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008652.1-five_prime_utr	Sed0008652.1-five_prime_utr-LG13:22885418..22885715	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0008652.1	Sed0008652.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding