Sed0007887.4 (mRNA) Chayote v1

Overview


Name	Sed0007887.4
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	LG05: 34495313 .. 34500955 (+)
Sequence length	1293
RNA-Seq Expression	Sed0007887.4
Synteny	Sed0007887.4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGTTTAGGCATTAATCATCAATTTGGGAGTAAATCTGGAAGTAGAACTACTGGAAAAGGGTTTAGGGTTTTAAGCAAAAGAGGAAGAGAGAGAAAAGGGAGGAAACGAATTCCCCTGCCCTTTCATCGCCGCTCTCCATCGCCGCGGGTTCGCCTTTTCGCCGCCATTGCTTGATTCCGACGCCGACGAAGGTTTTTGGGGCAGAATCACCAATTAGATCAATCCATATATTTTTTTATATTTAATCCTGAAATCTTCTCAAAGTTCCTCGCAAATAGTGTTCGTTTGGGGTTGTTTCGCGATTTTCAGCAAAGACACTTAATTTTGGACTTCCAAATCACTCCGACTCGTGTTTGCCACCCAGGTTTGGCTTGAATTCAAGTATCCATCGGCTGTTGAGTTCATACTGGCGATTTTGCAACAAATCAAACACTTTCCAGCCAAGAGTGGAGTCCGTTTGACGAACTTTGGTGGTAAAACTTCGATTAGACCTCTGCGAATACTTTTCAAGTACCTTAGCATAGTTCTTTTATACTTCTGGAATCCCTATGCTTTAGGATCTGAATTGGTTTTGGAGTGTTCTGACTGATTTTAAGATGATTTTGGTTAATAACAACCTTTCTAAACACTCTTTAAATTTTGGTTAAGTTCTTCATGCCCAATTCTAATTTTAGACCATGTTTAGTTCTTGAAGGTAGTGATGTGATTTTGACTACAAGCTTGGTGATGATGGTTGTGGGGAGGCTCGATTGACCCTTTAGTTGCCCCTTTTGTTATTTTTTTTTTGAAACAAGGGTAACCACGCCCGTTCCTAGGCCAGGCACTAAAGACATCGAAAGAGTAATGTCACGGGTGAACATTGAACCTGGGAGTCTGGGACCTTGAGGGGAGCATACCTTCAAAGCCCAAGTCTTCAACCATTGTGCCACTCCATGGGGACGGCCCTTTTTTTTATTTTACTCACAAACTTTTGGTAGTTAGCTTACTTTCCTTGCTTGGATTTTTATTTTATTTTATTTATTTTTTTTAGGAAACAAACCCTTTCATTGATATATGAAAAAGTTACAAAGAAGAAAGATAAGAGAAGAATGAATACGATGTAGAAAAGAAATAGAGGAAGGAGATGCCAACTACATTGACAAAAATTAAAGTAGGGTCAATAACAAAGAAGATTAAACCAAAATACAAACAAATGCACCAAAAAATAAGAGTTGAATTTTGCTTTAGTCATGTTTGTCGATGTCGGGAAGTAGTTAGCTTACTTTCCTTGCTTGGGTTGATCCTTGGTCAAGAGAGATAGTTGCTATTTGTTTTTTTTTTCTAGACGTTTAGAGTTGTACTTTTGCCTTTTGGTTTAGTTGTTTAATTGCTTTTGTGAGTTGAGACCTTGATGCTCAAGAATTTAAGTTCGGTTTTGTTCTAGAGTAATGAGTACAACTTATCGTTTTACTTGAGTTAAGTTAAATGAGAAGTTTTAGTAATTTGCCAATTTAGTTTGAAATTTGCAGGTTTTAGCAAAGCAACCTTAAATTCCTATCTATGGAGGCTATGGTGAAAAAGTATCAGCAAAAATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGAGTTTCAAGTTCTCTTGATTTCACATTTCACAAATGCTTCCTCTATCATCGGGAGATTGCAGGTCAGTCACAGTTGTCATTTTATTAGGCTAATAGATAGTTGTTTTTAGTTTCAATTTTAAAAAAAAAAACTCGAAAATCAGAGCTTCACTCAACTATTCCCGGCTATGAAGCACGGACACGGGACACGGATTCAGACAAGACGATACCCCATATTCTTAACAACTAAGAGTTGTTTTTTTTTTAATAAATTTTTTATATTAAATCTTTAAATTTAGCACAAAATACTAAATGTACTTTACTAAAAAGCATAGAATGTCAAATTAATTACAATGGATTTTGGTTGAGCATGCCATGTGGGAGGTGGCGGCAAACGAGTATTTTAGAAGATGTCGATGGGGTTTTTTTTTAGGGAGAAGAGGTAATGGTGGTTGGTTTTTTGTGACAAATGAGAAAGATGACTTTTTTGTTTTGCCTTTTCCTTTTTCATTATTTAGTTAACTATAATTAAATTATTTTGGGTTTGAGCTTTTAACATTTTAACTCAAAGTCCACACATGTTTACAAGATGTGTCCAATTATTACAGTATAATTAAAAATATGGACACGTAAAATGGCGTGTTGGACACGTGTCTGAGAAGTGTCTAGAAGAATGTGTGTCCGATACGTGTCCAACACAGATTCTTTCCCTATTTTGAAGTATCCGTACTTCATAGATTCCTGGGAGCACCTATGCCCGTCCCAAGACCCGGACCTGGGAGATAACAAGAGATTTTATAATTAAGCTCTCTTATGGAGCTCGAACCTGAGACCTCTTGAAAGCCCCAAGCCTCAATCAACGAGGCTGCCCTTTGTAGACGTTTTCAGTTTCAAAATTAGAATATTTTAAAAATTATTGTCAGGTGATTCAAGACCCTAAGAATTATGGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGCAACTTAGTTACACATCTATTAGAAATACAATGTAAGTTTGTTTTTGTTCAATTTCTTTTTATGCTTCTGCTTGTGATTCATAATCTCACCCGATAATCTAGACTTAGAAGAAAAAATCAGAAGCAAAAATAAAAATTGATGATGAAATTGCCATGAGCCTAACCTTAACTTAACTGATTAAGGCAAATATCTTTGACCAAGAGGTTGGAGGTTTGAATCTCCATCTCCTCATTCTCCTCATTCTCCTCATGTTGTTGAACAAAAAAAAAAAAATACTGCTCATGAAATTCGTCCAACTGGCCCATTAACTTTTTTCTGCTATATTGTTTACATCAATGAAGAATCTGAATAAATATCTTAGGGAAGAACTTGGGAATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGATCAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACCCAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTAAGAATTTCTTTTATCTCTTTATGTAAAGTATATGCAATATCTTTTTGAATGCTTAATTTATATTCTGATTGAAGCTTATGTTATGGTACCTATAATTATGGTGCACCGTGTACGACCACAGACTCACTTGTAAATCTATGTTTTATTGTTTTTAACCATTATAGTAGCTTTATCTCATATGCCAAGTTTTTTACTGGATGGTTAATTTGCCTTCTTAATGAACTTGTTTCAATTTCTGTAGGTATCATCTTAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAACCCGGGTAATTTCTTTTTGTCAGTTGAGGAATTTAAGGTCTTAATGAACTTCTGGTTGTAACTAGAGGATTGATGAAGTTGGTGAAGTAAAAAAAAAACATTTAGCCCCGTTGGATAACCATTTGGTTTTTGAAATTTAAGCTTATTTTCACTTCAATTGTCTACAATGGTTTCATCTTCCCGTTAGGGGGTGTTTGGGGGAAGGGAAACAAGAATGATTATGGGGGAATGAGAATTAGGGGGAGAATAGGAAAGAAAATAATTATGGGGAGAATGATTATTTGGGTTTGAGGGGAGATGAATTATTATGAGGAAAATGATTATTTGTGTTTGGAGTGAAGAGAATGAATGCGAGTGAAAAATAATGAGGAGAATGTAATTATGGGGAGAATGTAATCAAGGTCCCTGGTTCGAGACTCAACTGTGACATTACTCCTTTGATGTCTCCCGGTGCTTGACCTAGGGACGGGTGTGGTTACCCTTGTTTCACAAAAAAAAAAAATAACATGGATAAAATGTAGATATCAATGTAATAAAACTAGAAGTCGGAGTAGTTGTTGTAGCTTAATTTTCAAAATCCAAAAACAAAATGGTTTTCAAACAATGCTTTAATTTTGGAGTTTTAATTTGCTTTTGATAGTTGCTATGAAATATCCTTTTCTTCTAATGTGCCCATATGGGTTTTTAGATTATTTCCTTTTATCATCTTGTTTGTCTTTTTCGTTCCAAAATATGTAACTACTGTGGTTTATTTTCCTCCCTCTTACAGTATGCATCTTGAATTTTTAGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTCCGAAAGAGGAAGGTTAGTCGATTTCAGCACATCGTATAATGAACTTTTGTGATAAATATGTTATTTGCAAGTTTAGAAGCACTAAATTTGTGAATCAAAAGAACCATGTTTATATTTTTTGGTAGGAAACCAAGTCAAGATATAAATGAAACATATGTACAAGGGCAAGCAAAAAACAAGCCCACAAATAAAGTATCCGAACCCTAACTTCAAAACAAACCCTAACTCAAGAGGATGAAATCAAGCGCATAATTTCTTAAACGCCAGGTAATAGGGCCATAAGGATGCATTAAACCTAGCTTTAACTAAAACCTCCTCCCACAATCTCTCAACCTCTCTAAAATATTCTGACGTTCTTCTTGAGCCAAATTTCCCTCAATAAGACAGGCATTGCCTGCCACTGTGTTTTTGAAACAAGAAACTAACATTTTCATTGAATCAAAGCCTGCCACTATTTGAAAGAAAGGTAATTGTCTGGCTCATGTTCATGGTTGACTGTCCATTTCATTCTTTTGGGTGCAAAGTTTGCTTTTACTTTCACCATGTAACGCGTTTCATTGTTATGGACCATTTTTGACTTTATCCTATTTGTAATGAAGCACTATCTTGAACTTGAATTAGTTGCCTTGTCCTTGCTTTCAAGTGTTCGAATCTTGCCCTGCTGTTTTCTTTTTTTGAAGCAAAGGTAACCACGCCCGTCCTTAAGCCAGACACTGGAGACATTGAAGGAGTAATGTCAGCCATGCTGTTTCTATAGTGGCTTTTATTTAAGCTTGCCAGTCTGGATGGCTTTAATGTCTTATTTCATCATTCTGCACTTGCCCCTCGATACATGACGAGTATGTTAAGCATAAGATAGAATAATTGAGATGCACACAAGCAAACATGAACACTCATGTTAAGACTAATGTCTAGAAAATCCGCTTAGTTTGGCCATCAAGTGGCCATGTGTTGTCGGAGGCGTAAAACTAAAATTTTGTTGGCTTTGCATTCATTTGATGCTTGGATTAAGTTCCGAAATACTGTTTGTTGCCTGTATTGATATGTTGTGGCATCTTGACATTGCAAAATGGGTTGATTTATATCCTATTTTGTTGCAGTTGAACTCATCTATGATATTATACTGGTTCCAGAAGCCTAAATTGATATGGAGATATTCAAAACAGTTCAAGAACTTTTGATTGCATCTACAAGCTTTCTTCCAAGCAGAGACTTGTATTTTTGCAATGTTGAGTATTGGAAGAGATATTTACGAAGGTAAAGCTTAATGGATATTTATCTGTATATCCCCCTGTTTCCACAGTTCTAGGAAGTAGTCTGGCAACTAATTTTTATTTTTGTTTTAGAGGAAAGA

mRNA sequence

TGAGTTTAGGCATTAATCATCAATTTGGGAGTAAATCTGGAAGTAGAACTACTGGAAAAGGGTTTAGGGTTTTAAGCAAAAGAGGAAGAGAGAGAAAAGGGAGGAAACGAATTCCCCTGCCCTTTCATCGCCGCTCTCCATCGCCGCGGGTTCGCCTTTTCGCCGCCATTGCTTGATTCCGACGCCGACGAAGGTTTTTGGGGCAGAATCACCAATTAGATCAATCCATATATTTTTTTATATTTAATCCTGAAATCTTCTCAAAGTTCCTCGCAAATAGTGTTCGTTTGGGGTTGTTTCGCGATTTTCAGCAAAGACACTTAATTTTGGACTTCCAAATCACTCCGACTCGTGTTTGCCACCCAGGTTTGGCTTGAATTCAAGTATCCATCGGCTGTTGAGTTCATACTGGCGATTTTGCAACAAATCAAACACTTTCCAGCCAAGAGTGGAGTCCGTTTGACGAACTTTGGTGGTTTTAGCAAAGCAACCTTAAATTCCTATCTATGGAGGCTATGGTGAAAAAGTATCAGCAAAAATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGAGTTTCAAGTTCTCTTGATTTCACATTTCACAAATGCTTCCTCTATCATCGGGAGATTGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGCAACTTAGTTACACATCTATTAGAAATACAATGGAAGAACTTGGGAATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGATCAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACCCAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTATCATCTTAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAACCCGGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTCCGAAAGAGGAAGTTGAACTCATCTATGATATTATACTGGTTCCAGAAGCCTAAATTGATATGGAGATATTCAAAACAGTTCAAGAACTTTTGATTGCATCTACAAGCTTTCTTCCAAGCAGAGACTTGTATTTTTGCAATGTTGAGTATTGGAAGAGATATTTACGAAGGTAAAGCTTAATGGATATTTATCTGTATATCCCCCTGTTTCCACAGTTCTAGGAAGTAGTCTGGCAACTAATTTTTATTTTTGTTTTAGAGGAAAGA

Coding sequence (CDS)

ATGCTTCCTCTATCATCGGGAGATTGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGCAACTTAGTTACACATCTATTAGAAATACAATGGAAGAACTTGGGAATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGATCAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACCCAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTATCATCTTAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAACCCGGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTCCGAAAGAGGAAGTTGAACTCATCTATGATATTATACTGGTTCCAGAAGCCTAA

Protein sequence

MLPLSSGDCSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

Homology

[Close]

BLAST of Sed0007887.4 vs. NCBI nr
Match: XP_022928127.1 (uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 5.9e-58
Identity = 119/147 (80.95%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           SLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS
Sbjct: 54  SLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPS 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
            KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSL
Sbjct: 114 TKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPEA 157
           QQLL+DQPNI KEEVE I+D ILVPEA
Sbjct: 174 QQLLVDQPNIRKEEVEFIFDTILVPEA 200

[Close]

BLAST of Sed0007887.4 vs. NCBI nr
Match: XP_022989465.1 (uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 117/147 (79.59%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           SLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS
Sbjct: 54  SLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPS 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
            KQLQQRVG+KPS+E C++GL+LLCDMHRSEY+LKES+VSAL +LFWKP NH AQDLSSL
Sbjct: 114 TKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPEA 157
           QQLL+DQPNI KEEVE ++DIILVPEA
Sbjct: 174 QQLLVDQPNIRKEEVEFMFDIILVPEA 200

[Close]

BLAST of Sed0007887.4 vs. NCBI nr
Match: XP_022136277.1 (uncharacterized protein At5g43822 isoform X1 [Momordica charantia])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 116/156 (74.36%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 1   MLPLSSGDCSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQL 60
           ML  S    SLSG+DGI DA+LAKQ+ SLQL+++SI  TMEELGN+ RSMEKIYRDGKQL
Sbjct: 45  MLQDSKNYGSLSGIDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRDGKQL 104

Query: 61  IKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGN 120
           +K GS+QPS KQLQQRVG+KPSIE C++GL LLCDMHR+EYHLKES+VSAL +LFWK  N
Sbjct: 105 VKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRTEYHLKESVVSALPKLFWKASN 164

Query: 121 HRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA 157
           H AQDLSSLQQLLIDQPNI KEEVE ++D ILV EA
Sbjct: 165 HSAQDLSSLQQLLIDQPNIQKEEVEFVFDTILVVEA 200

[Close]

BLAST of Sed0007887.4 vs. NCBI nr
Match: XP_023529794.1 (uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529796.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.7 bits (561), Expect = 8.8e-54
Identity = 111/143 (77.62%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 14  MDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQL 73
           + GI DA+LAKQ+ SLQL ++SI  TM ELGNI RSMEKIYRDGKQLIK GS+QPS KQL
Sbjct: 55  LSGIVDALLAKQMESLQLVFSSIIKTMVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQL 114

Query: 74  QQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLL 133
           QQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VS+L ELFWKP NH AQDLSSLQQLL
Sbjct: 115 QQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLL 174

Query: 134 IDQPNIPKEEVELIYDIILVPEA 157
           +DQPNI KEEVE I+D ILVPEA
Sbjct: 175 VDQPNIRKEEVEFIFDTILVPEA 197

[Close]

BLAST of Sed0007887.4 vs. NCBI nr
Match: XP_004144893.1 (uncharacterized protein At5g43822 isoform X2 [Cucumis sativus] >KGN43347.1 hypothetical protein Csa_020516 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 4.4e-53
Identity = 111/147 (75.51%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           SLSGMDGI +A+LAKQ+ SLQLS++SI+ TMEELGNI  SMEKIYRDGKQL+K GS+QPS
Sbjct: 54  SLSGMDGIVEALLAKQMESLQLSFSSIKKTMEELGNIVNSMEKIYRDGKQLVKGGSNQPS 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
            KQLQQ+VG+KPS+E C++GL LLC MHRSEY+LKESIVSAL ELFWK  NH AQDLSSL
Sbjct: 114 IKQLQQKVGLKPSLEDCLNGLMLLCHMHRSEYNLKESIVSALPELFWKARNHGAQDLSSL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPEA 157
            QLL+DQPNI KEEVE ++D ILV EA
Sbjct: 174 HQLLVDQPNIKKEEVEFVFDTILVLEA 200

[Close]

BLAST of Sed0007887.4 vs. ExPASy Swiss-Prot
Match: Q6NPG7 (Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-28
Identity = 68/146 (46.58%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           +L  + GIEDAV+ +Q+G L+    S++N MEE      + EK++RDG QL +  S   S
Sbjct: 54  ALRCLKGIEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQLREIES---S 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
           K+++++R+G+KP I  C+ GL +L DMH+SEYHLK SI+S L  L  KP      DL++L
Sbjct: 114 KRRVEERIGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKPS---PGDLNAL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPE 156
           Q L++DQPNIPK+EV+ I+D+I   E
Sbjct: 174 QYLVVDQPNIPKDEVQHIFDVIFAEE 193

[Close]

BLAST of Sed0007887.4 vs. ExPASy TrEMBL
Match: A0A6J1EJ12 (uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 119/147 (80.95%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           SLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS
Sbjct: 54  SLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPS 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
            KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSL
Sbjct: 114 TKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPEA 157
           QQLL+DQPNI KEEVE I+D ILVPEA
Sbjct: 174 QQLLVDQPNIRKEEVEFIFDTILVPEA 200

[Close]

BLAST of Sed0007887.4 vs. ExPASy TrEMBL
Match: A0A6J1JMF9 (uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486514 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57
Identity = 117/147 (79.59%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           SLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS
Sbjct: 54  SLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPS 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
            KQLQQRVG+KPS+E C++GL+LLCDMHRSEY+LKES+VSAL +LFWKP NH AQDLSSL
Sbjct: 114 TKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPEA 157
           QQLL+DQPNI KEEVE ++DIILVPEA
Sbjct: 174 QQLLVDQPNIRKEEVEFMFDIILVPEA 200

[Close]

BLAST of Sed0007887.4 vs. ExPASy TrEMBL
Match: A0A6J1C552 (uncharacterized protein At5g43822 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008010 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.0e-56
Identity = 116/156 (74.36%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 1   MLPLSSGDCSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQL 60
           ML  S    SLSG+DGI DA+LAKQ+ SLQL+++SI  TMEELGN+ RSMEKIYRDGKQL
Sbjct: 45  MLQDSKNYGSLSGIDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRDGKQL 104

Query: 61  IKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGN 120
           +K GS+QPS KQLQQRVG+KPSIE C++GL LLCDMHR+EYHLKES+VSAL +LFWK  N
Sbjct: 105 VKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRTEYHLKESVVSALPKLFWKASN 164

Query: 121 HRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA 157
           H AQDLSSLQQLLIDQPNI KEEVE ++D ILV EA
Sbjct: 165 HSAQDLSSLQQLLIDQPNIQKEEVEFVFDTILVVEA 200

[Close]

BLAST of Sed0007887.4 vs. ExPASy TrEMBL
Match: A0A0A0K4X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025190 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53
Identity = 111/147 (75.51%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           SLSGMDGI +A+LAKQ+ SLQLS++SI+ TMEELGNI  SMEKIYRDGKQL+K GS+QPS
Sbjct: 54  SLSGMDGIVEALLAKQMESLQLSFSSIKKTMEELGNIVNSMEKIYRDGKQLVKGGSNQPS 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
            KQLQQ+VG+KPS+E C++GL LLC MHRSEY+LKESIVSAL ELFWK  NH AQDLSSL
Sbjct: 114 IKQLQQKVGLKPSLEDCLNGLMLLCHMHRSEYNLKESIVSALPELFWKARNHGAQDLSSL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPEA 157
            QLL+DQPNI KEEVE ++D ILV EA
Sbjct: 174 HQLLVDQPNIKKEEVEFVFDTILVLEA 200

[Close]

BLAST of Sed0007887.4 vs. ExPASy TrEMBL
Match: A0A6J1EQT0 (uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.7e-53
Identity = 109/134 (81.34%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           SLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS
Sbjct: 54  SLSGMDGIVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPS 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
            KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSL
Sbjct: 114 TKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSL 173

Query: 130 QQLLIDQPNIPKEE 144
           QQLL+DQPNI KEE
Sbjct: 174 QQLLVDQPNIRKEE 187

[Close]

BLAST of Sed0007887.4 vs. TAIR 10
Match: AT5G43822.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-29
Identity = 68/146 (46.58%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 10  SLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPS 69
           +L  + GIEDAV+ +Q+G L+    S++N MEE      + EK++RDG QL +  S   S
Sbjct: 54  ALRCLKGIEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQLREIES---S 113

Query: 70  KKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSL 129
           K+++++R+G+KP I  C+ GL +L DMH+SEYHLK SI+S L  L  KP      DL++L
Sbjct: 114 KRRVEERIGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKPS---PGDLNAL 173

Query: 130 QQLLIDQPNIPKEEVELIYDIILVPE 156
           Q L++DQPNIPK+EV+ I+D+I   E
Sbjct: 174 QYLVVDQPNIPKDEVQHIFDVIFAEE 193

The following BLAST results are available for this feature:

BLAST of Sed0007887.4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928127.1	5.9e-58	80.95	uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]	[more]
XP_022989465.1	3.8e-57	79.59	uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]	[more]
XP_022136277.1	1.2e-55	74.36	uncharacterized protein At5g43822 isoform X1 [Momordica charantia]	[more]
XP_023529794.1	8.8e-54	77.62	uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 u...	[more]
XP_004144893.1	4.4e-53	75.51	uncharacterized protein At5g43822 isoform X2 [Cucumis sativus] >KGN43347.1 hypot...	[more]

BLAST of Sed0007887.4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPG7	2.3e-28	46.58	Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 P...	[more]

BLAST of Sed0007887.4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ12	2.9e-58	80.95	uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JMF9	1.9e-57	79.59	uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1C552	6.0e-56	74.36	uncharacterized protein At5g43822 isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0K4X9	2.1e-53	75.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025190 PE=4 SV=1	[more]
A0A6J1EQT0	4.7e-53	81.34	uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0007887.4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43822.1	1.6e-29	46.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029159	Casein Kinase 2 substrate	PFAM	PF15011	CK2S	coord: 11..130 e-value: 1.0E-23 score: 84.1
None	No IPR available	PANTHER	PTHR37904:SF2	OS10G0566900 PROTEIN	coord: 10..155
IPR038985	At5g43822-like	PANTHER	PTHR37904	OS10G0566900 PROTEIN	coord: 10..155

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0007887	Sed0007887	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.4-five_prime_utr	Sed0007887.4-five_prime_utr-LG05:34495313..34495787	five_prime_UTR
Sed0007887.4-five_prime_utr	Sed0007887.4-five_prime_utr-LG05:34496823..34496956	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.4-exon	Sed0007887.4-exon-LG05:34495313..34495787	exon
Sed0007887.4-exon	Sed0007887.4-exon-LG05:34496823..34496985	exon
Sed0007887.4-exon	Sed0007887.4-exon-LG05:34497855..34497944	exon
Sed0007887.4-exon	Sed0007887.4-exon-LG05:34498275..34498454	exon
Sed0007887.4-exon	Sed0007887.4-exon-LG05:34498699..34498755	exon
Sed0007887.4-exon	Sed0007887.4-exon-LG05:34499540..34499613	exon
Sed0007887.4-exon	Sed0007887.4-exon-LG05:34500702..34500955	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.4-cds	Sed0007887.4-cds-LG05:34496957..34496985	CDS
Sed0007887.4-cds	Sed0007887.4-cds-LG05:34497855..34497944	CDS
Sed0007887.4-cds	Sed0007887.4-cds-LG05:34498275..34498454	CDS
Sed0007887.4-cds	Sed0007887.4-cds-LG05:34498699..34498755	CDS
Sed0007887.4-cds	Sed0007887.4-cds-LG05:34499540..34499613	CDS
Sed0007887.4-cds	Sed0007887.4-cds-LG05:34500702..34500742	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.4-three_prime_utr	Sed0007887.4-three_prime_utr-LG05:34500743..34500955	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0007887.4	Sed0007887.4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005635	nuclear envelope