Sed0007887.2 (mRNA) Chayote v1

Overview


Name	Sed0007887.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	LG05: 34495313 .. 34500955 (+)
Sequence length	1336
RNA-Seq Expression	Sed0007887.2
Synteny	Sed0007887.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGTTTAGGCATTAATCATCAATTTGGGAGTAAATCTGGAAGTAGAACTACTGGAAAAGGGTTTAGGGTTTTAAGCAAAAGAGGAAGAGAGAGAAAAGGGAGGAAACGAATTCCCCTGCCCTTTCATCGCCGCTCTCCATCGCCGCGGGTTCGCCTTTTCGCCGCCATTGCTTGATTCCGACGCCGACGAAGGTTTTTGGGGCAGAATCACCAATTAGATCAATCCATATATTTTTTTATATTTAATCCTGAAATCTTCTCAAAGTTCCTCGCAAATAGTGTTCGTTTGGGGTTGTTTCGCGATTTTCAGCAAAGACACTTAATTTTGGACTTCCAAATCACTCCGACTCGTGTTTGCCACCCAGGTTTGGCTTGAATTCAAGTATCCATCGGCTGTTGAGTTCATACTGGCGATTTTGCAACAAATCAAACACTTTCCAGCCAAGAGTGGAGTCCGTTTGACGAACTTTGGTGGTAAAACTTCGATTAGACCTCTGCGAATACTTTTCAAGTACCTTAGCATAGTTCTTTTATACTTCTGGAATCCCTATGCTTTAGGATCTGAATTGGTTTTGGAGTGTTCTGACTGATTTTAAGATGATTTTGGTTAATAACAACCTTTCTAAACACTCTTTAAATTTTGGTTAAGTTCTTCATGCCCAATTCTAATTTTAGACCATGTTTAGTTCTTGAAGGTAGTGATGTGATTTTGACTACAAGCTTGGTGATGATGGTTGTGGGGAGGCTCGATTGACCCTTTAGTTGCCCCTTTTGTTATTTTTTTTTTGAAACAAGGGTAACCACGCCCGTTCCTAGGCCAGGCACTAAAGACATCGAAAGAGTAATGTCACGGGTGAACATTGAACCTGGGAGTCTGGGACCTTGAGGGGAGCATACCTTCAAAGCCCAAGTCTTCAACCATTGTGCCACTCCATGGGGACGGCCCTTTTTTTTATTTTACTCACAAACTTTTGGTAGTTAGCTTACTTTCCTTGCTTGGATTTTTATTTTATTTTATTTATTTTTTTTAGGAAACAAACCCTTTCATTGATATATGAAAAAGTTACAAAGAAGAAAGATAAGAGAAGAATGAATACGATGTAGAAAAGAAATAGAGGAAGGAGATGCCAACTACATTGACAAAAATTAAAGTAGGGTCAATAACAAAGAAGATTAAACCAAAATACAAACAAATGCACCAAAAAATAAGAGTTGAATTTTGCTTTAGTCATGTTTGTCGATGTCGGGAAGTAGTTAGCTTACTTTCCTTGCTTGGGTTGATCCTTGGTCAAGAGAGATAGTTGCTATTTGTTTTTTTTTTCTAGACGTTTAGAGTTGTACTTTTGCCTTTTGGTTTAGTTGTTTAATTGCTTTTGTGAGTTGAGACCTTGATGCTCAAGAATTTAAGTTCGGTTTTGTTCTAGAGTAATGAGTACAACTTATCGTTTTACTTGAGTTAAGTTAAATGAGAAGTTTTAGTAATTTGCCAATTTAGTTTGAAATTTGCAGGTTTTAGCAAAGCAACCTTAAATTCCTATCTATGGAGGCTATGGTGAAAAAGTATCAGCAAAAATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGAGTTTCAAGTTCTCTTGATTTCACATTTCACAAATGCTTCCTCTATCATCGGGAGATTGCAGGTCAGTCACAGTTGTCATTTTATTAGGCTAATAGATAGTTGTTTTTAGTTTCAATTTTAAAAAAAAAAACTCGAAAATCAGAGCTTCACTCAACTATTCCCGGCTATGAAGCACGGACACGGGACACGGATTCAGACAAGACGATACCCCATATTCTTAACAACTAAGAGTTGTTTTTTTTTTAATAAATTTTTTATATTAAATCTTTAAATTTAGCACAAAATACTAAATGTACTTTACTAAAAAGCATAGAATGTCAAATTAATTACAATGGATTTTGGTTGAGCATGCCATGTGGGAGGTGGCGGCAAACGAGTATTTTAGAAGATGTCGATGGGGTTTTTTTTTAGGGAGAAGAGGTAATGGTGGTTGGTTTTTTGTGACAAATGAGAAAGATGACTTTTTTGTTTTGCCTTTTCCTTTTTCATTATTTAGTTAACTATAATTAAATTATTTTGGGTTTGAGCTTTTAACATTTTAACTCAAAGTCCACACATGTTTACAAGATGTGTCCAATTATTACAGTATAATTAAAAATATGGACACGTAAAATGGCGTGTTGGACACGTGTCTGAGAAGTGTCTAGAAGAATGTGTGTCCGATACGTGTCCAACACAGATTCTTTCCCTATTTTGAAGTATCCGTACTTCATAGATTCCTGGGAGCACCTATGCCCGTCCCAAGACCCGGACCTGGGAGATAACAAGAGATTTTATAATTAAGCTCTCTTATGGAGCTCGAACCTGAGACCTCTTGAAAGCCCCAAGCCTCAATCAACGAGGCTGCCCTTTGTAGACGTTTTCAGTTTCAAAATTAGAATATTTTAAAAATTATTGTCAGGTGATTCAAGACCCTAAGAATTATGGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGCAACTTAGTTACACATCTATTAGAAATACAATGTAAGTTTGTTTTTGTTCAATTTCTTTTTATGCTTCTGCTTGTGATTCATAATCTCACCCGATAATCTAGACTTAGAAGAAAAAATCAGAAGCAAAAATAAAAATTGATGATGAAATTGCCATGAGCCTAACCTTAACTTAACTGATTAAGGCAAATATCTTTGACCAAGAGGTTGGAGGTTTGAATCTCCATCTCCTCATTCTCCTCATTCTCCTCATGTTGTTGAACAAAAAAAAAAAAATACTGCTCATGAAATTCGTCCAACTGGCCCATTAACTTTTTTCTGCTATATTGTTTACATCAATGAAGAATCTGAATAAATATCTTAGGGAAGAACTTGGGAATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGATCAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACCCAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTAAGAATTTCTTTTATCTCTTTATGTAAAGTATATGCAATATCTTTTTGAATGCTTAATTTATATTCTGATTGAAGCTTATGTTATGGTACCTATAATTATGGTGCACCGTGTACGACCACAGACTCACTTGTAAATCTATGTTTTATTGTTTTTAACCATTATAGTAGCTTTATCTCATATGCCAAGTTTTTTACTGGATGGTTAATTTGCCTTCTTAATGAACTTGTTTCAATTTCTGTAGGTATCATCTTAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAACCCGGGTAATTTCTTTTTGTCAGTTGAGGAATTTAAGGTCTTAATGAACTTCTGGTTGTAACTAGAGGATTGATGAAGTTGGTGAAGTAAAAAAAAAACATTTAGCCCCGTTGGATAACCATTTGGTTTTTGAAATTTAAGCTTATTTTCACTTCAATTGTCTACAATGGTTTCATCTTCCCGTTAGGGGGTGTTTGGGGGAAGGGAAACAAGAATGATTATGGGGGAATGAGAATTAGGGGGAGAATAGGAAAGAAAATAATTATGGGGAGAATGATTATTTGGGTTTGAGGGGAGATGAATTATTATGAGGAAAATGATTATTTGTGTTTGGAGTGAAGAGAATGAATGCGAGTGAAAAATAATGAGGAGAATGTAATTATGGGGAGAATGTAATCAAGGTCCCTGGTTCGAGACTCAACTGTGACATTACTCCTTTGATGTCTCCCGGTGCTTGACCTAGGGACGGGTGTGGTTACCCTTGTTTCACAAAAAAAAAAAATAACATGGATAAAATGTAGATATCAATGTAATAAAACTAGAAGTCGGAGTAGTTGTTGTAGCTTAATTTTCAAAATCCAAAAACAAAATGGTTTTCAAACAATGCTTTAATTTTGGAGTTTTAATTTGCTTTTGATAGTTGCTATGAAATATCCTTTTCTTCTAATGTGCCCATATGGGTTTTTAGATTATTTCCTTTTATCATCTTGTTTGTCTTTTTCGTTCCAAAATATGTAACTACTGTGGTTTATTTTCCTCCCTCTTACAGTATGCATCTTGAATTTTTAGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTCCGAAAGAGGAAGGTTAGTCGATTTCAGCACATCGTATAATGAACTTTTGTGATAAATATGTTATTTGCAAGTTTAGAAGCACTAAATTTGTGAATCAAAAGAACCATGTTTATATTTTTTGGTAGGAAACCAAGTCAAGATATAAATGAAACATATGTACAAGGGCAAGCAAAAAACAAGCCCACAAATAAAGTATCCGAACCCTAACTTCAAAACAAACCCTAACTCAAGAGGATGAAATCAAGCGCATAATTTCTTAAACGCCAGGTAATAGGGCCATAAGGATGCATTAAACCTAGCTTTAACTAAAACCTCCTCCCACAATCTCTCAACCTCTCTAAAATATTCTGACGTTCTTCTTGAGCCAAATTTCCCTCAATAAGACAGGCATTGCCTGCCACTGTGTTTTTGAAACAAGAAACTAACATTTTCATTGAATCAAAGCCTGCCACTATTTGAAAGAAAGGTAATTGTCTGGCTCATGTTCATGGTTGACTGTCCATTTCATTCTTTTGGGTGCAAAGTTTGCTTTTACTTTCACCATGTAACGCGTTTCATTGTTATGGACCATTTTTGACTTTATCCTATTTGTAATGAAGCACTATCTTGAACTTGAATTAGTTGCCTTGTCCTTGCTTTCAAGTGTTCGAATCTTGCCCTGCTGTTTTCTTTTTTTGAAGCAAAGGTAACCACGCCCGTCCTTAAGCCAGACACTGGAGACATTGAAGGAGTAATGTCAGCCATGCTGTTTCTATAGTGGCTTTTATTTAAGCTTGCCAGTCTGGATGGCTTTAATGTCTTATTTCATCATTCTGCACTTGCCCCTCGATACATGACGAGTATGTTAAGCATAAGATAGAATAATTGAGATGCACACAAGCAAACATGAACACTCATGTTAAGACTAATGTCTAGAAAATCCGCTTAGTTTGGCCATCAAGTGGCCATGTGTTGTCGGAGGCGTAAAACTAAAATTTTGTTGGCTTTGCATTCATTTGATGCTTGGATTAAGTTCCGAAATACTGTTTGTTGCCTGTATTGATATGTTGTGGCATCTTGACATTGCAAAATGGGTTGATTTATATCCTATTTTGTTGCAGTTGAACTCATCTATGATATTATACTGGTTCCAGAAGCCTAAATTGATATGGAGATATTCAAAACAGTTCAAGAACTTTTGATTGCATCTACAAGCTTTCTTCCAAGCAGAGACTTGTATTTTTGCAATGTTGAGTATTGGAAGAGATATTTACGAAGGTAAAGCTTAATGGATATTTATCTGTATATCCCCCTGTTTCCACAGTTCTAGGAAGTAGTCTGGCAACTAATTTTTATTTTTGTTTTAGAGGAAAGA

mRNA sequence

TGAGTTTAGGCATTAATCATCAATTTGGGAGTAAATCTGGAAGTAGAACTACTGGAAAAGGGTTTAGGGTTTTAAGCAAAAGAGGAAGAGAGAGAAAAGGGAGGAAACGAATTCCCCTGCCCTTTCATCGCCGCTCTCCATCGCCGCGGGTTCGCCTTTTCGCCGCCATTGCTTGATTCCGACGCCGACGAAGGTTTTTGGGGCAGAATCACCAATTAGATCAATCCATATATTTTTTTATATTTAATCCTGAAATCTTCTCAAAGTTCCTCGCAAATAGTGTTCGTTTGGGGTTGTTTCGCGATTTTCAGCAAAGACACTTAATTTTGGACTTCCAAATCACTCCGACTCGTGTTTGCCACCCAGGTTTGGCTTGAATTCAAGTATCCATCGGCTGTTGAGTTCATACTGGCGATTTTGCAACAAATCAAACACTTTCCAGCCAAGAGTGGAGTCCGTTTGACGAACTTTGGTGTTTGAAATTTGCAGGTTTTAGCAAAGCAACCTTAAATTCCTATCTATGGAGGCTATGGTGAAAAAGTATCAGCAAAAATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGAGTTTCAAGTTCTCTTGATTTCACATTTCACAAATGCTTCCTCTATCATCGGGAGATTGCAGGTGATTCAAGACCCTAAGAATTATGGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGCAACTTAGTTACACATCTATTAGAAATACAATGGAAGAACTTGGGAATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGATCAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACCCAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTATCATCTTAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAACCCGGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTCCGAAAGAGGAAGTTGAACTCATCTATGATATTATACTGGTTCCAGAAGCCTAAATTGATATGGAGATATTCAAAACAGTTCAAGAACTTTTGATTGCATCTACAAGCTTTCTTCCAAGCAGAGACTTGTATTTTTGCAATGTTGAGTATTGGAAGAGATATTTACGAAGGTAAAGCTTAATGGATATTTATCTGTATATCCCCCTGTTTCCACAGTTCTAGGAAGTAGTCTGGCAACTAATTTTTATTTTTGTTTTAGAGGAAAGA

Coding sequence (CDS)

ATGGAGGCTATGGTGAAAAAGTATCAGCAAAAATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGAGTTTCAAGTTCTCTTGATTTCACATTTCACAAATGCTTCCTCTATCATCGGGAGATTGCAGGTGATTCAAGACCCTAAGAATTATGGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGCAACTTAGTTACACATCTATTAGAAATACAATGGAAGAACTTGGGAATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGATCAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACCCAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTATCATCTTAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAACCCGGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTCCGAAAGAGGAAGTTGAACTCATCTATGATATTATACTGGTTCCAGAAGCCTAA

Protein sequence

MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

Homology

[Close]

BLAST of Sed0007887.2 vs. NCBI nr
Match: XP_022928127.1 (uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata])

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEEVELIYDIILVPEA 201
           PNI KEEVE I+D ILVPEA
Sbjct: 181 PNIRKEEVEFIFDTILVPEA 200

[Close]

BLAST of Sed0007887.2 vs. NCBI nr
Match: XP_022989465.1 (uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima])

HSP 1 Score: 324.3 bits (830), Expect = 7.3e-85
Identity = 163/200 (81.50%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMD WDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEY+LKES+VSAL +LFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEEVELIYDIILVPEA 201
           PNI KEEVE ++DIILVPEA
Sbjct: 181 PNIRKEEVEFMFDIILVPEA 200

[Close]

BLAST of Sed0007887.2 vs. NCBI nr
Match: XP_023529794.1 (uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529796.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 4.4e-82
Identity = 162/200 (81.00%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDPKNYGSLS   G
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLS---G 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TM ELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEYHLKES+VS+L ELFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEEVELIYDIILVPEA 201
           PNI KEEVE I+D ILVPEA
Sbjct: 181 PNIRKEEVEFIFDTILVPEA 197

[Close]

BLAST of Sed0007887.2 vs. NCBI nr
Match: XP_022136277.1 (uncharacterized protein At5g43822 isoform X1 [Momordica charantia])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 157/200 (78.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS F NAS IIGRLQ++QD KNYGSLSG+DG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDSKNYGSLSGIDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL+++SI  TMEELGN+ RSMEKIYRDGKQL+K GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPSIE C++GL LLCDMHR+EYHLKES+VSAL +LFWK  NH AQDLSSLQQLLIDQ
Sbjct: 121 VGLKPSIEDCLNGLMLLCDMHRTEYHLKESVVSALPKLFWKASNHSAQDLSSLQQLLIDQ 180

Query: 181 PNIPKEEVELIYDIILVPEA 201
           PNI KEEVE ++D ILV EA
Sbjct: 181 PNIQKEEVEFVFDTILVVEA 200

[Close]

BLAST of Sed0007887.2 vs. NCBI nr
Match: XP_022928123.1 (uncharacterized protein At5g43822 isoform X1 [Cucurbita moschata] >XP_022928124.1 uncharacterized protein At5g43822 isoform X1 [Cucurbita moschata] >XP_022928125.1 uncharacterized protein At5g43822 isoform X1 [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 4.9e-81
Identity = 156/187 (83.42%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEE 188
           PNI KEE
Sbjct: 181 PNIRKEE 187

[Close]

BLAST of Sed0007887.2 vs. ExPASy Swiss-Prot
Match: Q6NPG7 (Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.3e-46
Identity = 98/199 (49.25%), Postives = 141/199 (70.85%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEA+++K+QQKFRK K+EM++W+  QV  +S F NASSII RLQ +Q+  +YG+L  + G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           IEDAV+ +Q+G L+    S++N MEE      + EK++RDG QL +  S   SK+++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQLREIES---SKRRVEER 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           +G+KP I  C+ GL +L DMH+SEYHLK SI+S L  L  KP      DL++LQ L++DQ
Sbjct: 121 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKPS---PGDLNALQYLVVDQ 180

Query: 181 PNIPKEEVELIYDIILVPE 200
           PNIPK+EV+ I+D+I   E
Sbjct: 181 PNIPKDEVQHIFDVIFAEE 193

[Close]

BLAST of Sed0007887.2 vs. ExPASy TrEMBL
Match: A0A6J1EJ12 (uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEEVELIYDIILVPEA 201
           PNI KEEVE I+D ILVPEA
Sbjct: 181 PNIRKEEVEFIFDTILVPEA 200

[Close]

BLAST of Sed0007887.2 vs. ExPASy TrEMBL
Match: A0A6J1JMF9 (uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486514 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.5e-85
Identity = 163/200 (81.50%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMD WDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEY+LKES+VSAL +LFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEEVELIYDIILVPEA 201
           PNI KEEVE ++DIILVPEA
Sbjct: 181 PNIRKEEVEFMFDIILVPEA 200

[Close]

BLAST of Sed0007887.2 vs. ExPASy TrEMBL
Match: A0A6J1C552 (uncharacterized protein At5g43822 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008010 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.1e-81
Identity = 157/200 (78.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS F NAS IIGRLQ++QD KNYGSLSG+DG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDSKNYGSLSGIDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL+++SI  TMEELGN+ RSMEKIYRDGKQL+K GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPSIE C++GL LLCDMHR+EYHLKES+VSAL +LFWK  NH AQDLSSLQQLLIDQ
Sbjct: 121 VGLKPSIEDCLNGLMLLCDMHRTEYHLKESVVSALPKLFWKASNHSAQDLSSLQQLLIDQ 180

Query: 181 PNIPKEEVELIYDIILVPEA 201
           PNI KEEVE ++D ILV EA
Sbjct: 181 PNIQKEEVEFVFDTILVVEA 200

[Close]

BLAST of Sed0007887.2 vs. ExPASy TrEMBL
Match: A0A6J1EQT0 (uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.4e-81
Identity = 156/187 (83.42%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEE 188
           PNI KEE
Sbjct: 181 PNIRKEE 187

[Close]

BLAST of Sed0007887.2 vs. ExPASy TrEMBL
Match: A0A6J1EJF6 (uncharacterized protein At5g43822 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.4e-81
Identity = 156/187 (83.42%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           I DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRDGKQLIK GS+QPS KQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           VG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIPKEE 188
           PNI KEE
Sbjct: 181 PNIRKEE 187

[Close]

BLAST of Sed0007887.2 vs. TAIR 10
Match: AT5G43822.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-47
Identity = 98/199 (49.25%), Postives = 141/199 (70.85%), Query Frame = 0


Query: 1   MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDG 60
           MEA+++K+QQKFRK K+EM++W+  QV  +S F NASSII RLQ +Q+  +YG+L  + G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 61  IEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSDQPSKKQLQQR 120
           IEDAV+ +Q+G L+    S++N MEE      + EK++RDG QL +  S   SK+++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQLREIES---SKRRVEER 120

Query: 121 VGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQ 180
           +G+KP I  C+ GL +L DMH+SEYHLK SI+S L  L  KP      DL++LQ L++DQ
Sbjct: 121 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKPS---PGDLNALQYLVVDQ 180

Query: 181 PNIPKEEVELIYDIILVPE 200
           PNIPK+EV+ I+D+I   E
Sbjct: 181 PNIPKDEVQHIFDVIFAEE 193

The following BLAST results are available for this feature:

BLAST of Sed0007887.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928127.1	3.0e-86	83.00	uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]	[more]
XP_022989465.1	7.3e-85	81.50	uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]	[more]
XP_023529794.1	4.4e-82	81.00	uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 u...	[more]
XP_022136277.1	2.2e-81	78.50	uncharacterized protein At5g43822 isoform X1 [Momordica charantia]	[more]
XP_022928123.1	4.9e-81	83.42	uncharacterized protein At5g43822 isoform X1 [Cucurbita moschata] >XP_022928124....	[more]

BLAST of Sed0007887.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPG7	5.3e-46	49.25	Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 P...	[more]

BLAST of Sed0007887.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ12	1.4e-86	83.00	uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JMF9	3.5e-85	81.50	uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1C552	1.1e-81	78.50	uncharacterized protein At5g43822 isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1EQT0	2.4e-81	83.42	uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1EJF6	2.4e-81	83.42	uncharacterized protein At5g43822 isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0007887.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43822.1	3.8e-47	49.25	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029159	Casein Kinase 2 substrate	PFAM	PF15011	CK2S	coord: 7..174 e-value: 1.1E-39 score: 135.9
IPR038985	At5g43822-like	PANTHER	PTHR37904	OS10G0566900 PROTEIN	coord: 1..199
None	No IPR available	PANTHER	PTHR37904:SF2	OS10G0566900 PROTEIN	coord: 1..199

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0007887	Sed0007887	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.2-five_prime_utr	Sed0007887.2-five_prime_utr-LG05:34495313..34495787	five_prime_UTR
Sed0007887.2-five_prime_utr	Sed0007887.2-five_prime_utr-LG05:34496809..34496853	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.2-exon	Sed0007887.2-exon-LG05:34495313..34495787	exon
Sed0007887.2-exon	Sed0007887.2-exon-LG05:34496809..34496985	exon
Sed0007887.2-exon	Sed0007887.2-exon-LG05:34497826..34497944	exon
Sed0007887.2-exon	Sed0007887.2-exon-LG05:34498275..34498454	exon
Sed0007887.2-exon	Sed0007887.2-exon-LG05:34498699..34498755	exon
Sed0007887.2-exon	Sed0007887.2-exon-LG05:34499540..34499613	exon
Sed0007887.2-exon	Sed0007887.2-exon-LG05:34500702..34500955	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.2-cds	Sed0007887.2-cds-LG05:34496854..34496985	CDS
Sed0007887.2-cds	Sed0007887.2-cds-LG05:34497826..34497944	CDS
Sed0007887.2-cds	Sed0007887.2-cds-LG05:34498275..34498454	CDS
Sed0007887.2-cds	Sed0007887.2-cds-LG05:34498699..34498755	CDS
Sed0007887.2-cds	Sed0007887.2-cds-LG05:34499540..34499613	CDS
Sed0007887.2-cds	Sed0007887.2-cds-LG05:34500702..34500742	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007887.2-three_prime_utr	Sed0007887.2-three_prime_utr-LG05:34500743..34500955	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0007887.2	Sed0007887.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005635	nuclear envelope