Sed0007605.1 (mRNA) Chayote v1

Overview


Name	Sed0007605.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG12: 32259602 .. 32260369 (-)
Sequence length	657
RNA-Seq Expression	Sed0007605.1
Synteny	Sed0007605.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTCGATCCCTCCATTTCACTAAAACTAAAAAAGTGCCCTAACGATTCACACACTTTTCCCCCCTTTTCTCTCTTCTTTCCTTTCCACTTTCCGATTCCCTTTTTGCTCCCTCCGCCCAATGTCCGCCGGGAAACCACCGCCGGCCGCCGTAGAAGAAACGCAGAGCAACCGGAAAAGAATGTGGCTCGCCGGCGTATGGGAAGAGAAAGAGCAAGAACTCGGCCGGCAACAAGCACCGGGAAGTTGCTCCTTCTGTCAAGGCAAAGTGTACGCCATTGACGTCGAAAGGCGATGGAAGCTCTGTTGCCTCTCTCTCTGCCGCAAGATCAAGCGCAACTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAACTGTGTCACTGGTAGTTCGTTCTTCGCAAAAGTAGGTTTCGATTCTCTTCTCACCGATCGAGATTCGTTTCGATTTTTCGCTCTAATCTCAACCGATGATCGTAATTCGTGTTTGATTTGAATTTTTGGTGAAACTGATTAGGATCGGGACTTGAATCTGACTCGAATCGTGCCATTGATGGTTCGTTCTTCACGAAATTAGGTTTTGATTTTCTATAAGCCGAACGCGATTCGTTTCTATTCGTCATTTCAAATTTCTACCGATGATCGTAATTAGGATCGGGCTTTGGATCTGATTTGATGAATCTGATCTTCTTGTTGTTTTGTTTTTTGCTTTTTGTACAGTAGTTTCGAAATACTGTGGGTAGAAGAAGGGTTCTCTTCTCTCTTAAGC

mRNA sequence

CAACTTCGATCCCTCCATTTCACTAAAACTAAAAAAGTGCCCTAACGATTCACACACTTTTCCCCCCTTTTCTCTCTTCTTTCCTTTCCACTTTCCGATTCCCTTTTTGCTCCCTCCGCCCAATGTCCGCCGGGAAACCACCGCCGGCCGCCGTAGAAGAAACGCAGAGCAACCGGAAAAGAATGTGGCTCGCCGGCGTATGGGAAGAGAAAGAGCAAGAACTCGGCCGGCAACAAGCACCGGGAAGTTGCTCCTTCTGTCAAGGCAAAGTGTACGCCATTGACGTCGAAAGGCGATGGAAGCTCTGTTGCCTCTCTCTCTGCCGCAAGATCAAGCGCAACTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAACTGTGTCACTGGTAGTTCGTTCTTCGCAAAAGATCGGGACTTGAATCTGACTCGAATCGTGCCATTGATGGTTCGTTCTTCACGAAATTAGGTTTTGATTTTCTATAAGCCGAACGCGATTCGTTTCTATTCGTCATTTCAAATTTCTACCGATGATCGTAATTAGGATCGGGCTTTGGATCTGATTTGATGAATCTGATCTTCTTGTTGTTTTGTTTTTTGCTTTTTGTACAGTAGTTTCGAAATACTGTGGGTAGAAGAAGGGTTCTCTTCTCTCTTAAGC

Coding sequence (CDS)

ATGTCCGCCGGGAAACCACCGCCGGCCGCCGTAGAAGAAACGCAGAGCAACCGGAAAAGAATGTGGCTCGCCGGCGTATGGGAAGAGAAAGAGCAAGAACTCGGCCGGCAACAAGCACCGGGAAGTTGCTCCTTCTGTCAAGGCAAAGTGTACGCCATTGACGTCGAAAGGCGATGGAAGCTCTGTTGCCTCTCTCTCTGCCGCAAGATCAAGCGCAACTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAACTGTGTCACTGGTAG

Protein sequence

MSAGKPPPAAVEETQSNRKRMWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCSRRLELCHW

Homology

[Close]

BLAST of Sed0007605.1 vs. NCBI nr
Match: XP_022933136.1 (uncharacterized protein LOC111439917 [Cucurbita moschata] >XP_023005786.1 uncharacterized protein LOC111498677 [Cucurbita maxima] >XP_023531340.1 uncharacterized protein LOC111793612 [Cucurbita pepo subsp. pepo] >KAG7021692.1 hypothetical protein SDJN02_15418, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 9.5e-29
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKEQELGRQQAPG+C FC+GKVYAIDVER+WKLCCL LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCRGKVYAIDVERQWKLCCLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. NCBI nr
Match: XP_038879931.1 (uncharacterized protein LOC120071640 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 6.1e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKE+ELGRQQAPG+C FCQGKVYAIDVERRWKLC L LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. NCBI nr
Match: XP_004146338.1 (uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548.1 PREDICTED: uncharacterized protein LOC103494230 [Cucumis melo] >KAA0058206.1 uncharacterized protein E6C27_scaffold274G005270 [Cucumis melo var. makuwa] >KGN65493.1 hypothetical protein Csa_019621 [Cucumis sativus] >TYK28570.1 uncharacterized protein E5676_scaffold629G002170 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 6.1e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKEQELGRQQAPG+C FCQGKVYAIDVER+WKLC L LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. NCBI nr
Match: XP_022135123.1 (uncharacterized protein LOC111007177 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 6.1e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKE+ELGRQQAPG+C FCQGKVYAIDVERRWKLC L LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. NCBI nr
Match: XP_022921752.1 (uncharacterized protein LOC111429909 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VW+EKE+ELGRQQAPG+C FC+GKV+AIDVERRWKLC L LC KIKR YLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. ExPASy TrEMBL
Match: A0A6J1KVZ2 (uncharacterized protein LOC111498677 OS=Cucurbita maxima OX=3661 GN=LOC111498677 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKEQELGRQQAPG+C FC+GKVYAIDVER+WKLCCL LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCRGKVYAIDVERQWKLCCLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. ExPASy TrEMBL
Match: A0A6J1EYA6 (uncharacterized protein LOC111439917 OS=Cucurbita moschata OX=3662 GN=LOC111439917 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKEQELGRQQAPG+C FC+GKVYAIDVER+WKLCCL LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCRGKVYAIDVERQWKLCCLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. ExPASy TrEMBL
Match: A0A5D3DZA2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002170 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKEQELGRQQAPG+C FCQGKVYAIDVER+WKLC L LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. ExPASy TrEMBL
Match: A0A0A0LUS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKEQELGRQQAPG+C FCQGKVYAIDVER+WKLC L LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. ExPASy TrEMBL
Match: A0A6J1C3X8 (uncharacterized protein LOC111007177 OS=Momordica charantia OX=3673 GN=LOC111007177 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          MWLA VWEEKE+ELGRQQAPG+C FCQGKVYAIDVERRWKLC L LC KIKR YLCTLCS
Sbjct: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 81 RRLELCHW 89
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0007605.1 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-17
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          M L  + +E+E ELGRQQAPGSC +C GKV  +DVER+W  C + LC KIKR Y C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 81 RRLELCH 88
          RRL L H
Sbjct: 61 RRLVLYH 67

[Close]

BLAST of Sed0007605.1 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-15
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          M L  V+ E++ ELGRQQAPG C +C GKV A+D+E +W  C L LC K+KR Y C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 81 RRLEL 86
          R L L
Sbjct: 61 RHLVL 65

[Close]

BLAST of Sed0007605.1 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-10
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 21 MWLAGVWEEKEQELGRQQAPGSCSFCQGKVYAIDVERRWKLCCLSLCRKIKRNYLCTLCS 80
          M L  V ++ E+ +GR  APG+C +C G V  +DV  +W+ C + L  K KR +LC+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 81 RRL 84
          +RL
Sbjct: 61 KRL 63

The following BLAST results are available for this feature:

BLAST of Sed0007605.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933136.1	9.5e-29	88.24	uncharacterized protein LOC111439917 [Cucurbita moschata] >XP_023005786.1 unchar...	[more]
XP_038879931.1	6.1e-28	88.24	uncharacterized protein LOC120071640 [Benincasa hispida]	[more]
XP_004146338.1	6.1e-28	88.24	uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548.1 PREDICTED...	[more]
XP_022135123.1	6.1e-28	88.24	uncharacterized protein LOC111007177 [Momordica charantia]	[more]
XP_022921752.1	1.5e-26	83.82	uncharacterized protein LOC111429909 [Cucurbita moschata]	[more]

BLAST of Sed0007605.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007605.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVZ2	4.6e-29	88.24	uncharacterized protein LOC111498677 OS=Cucurbita maxima OX=3661 GN=LOC111498677...	[more]
A0A6J1EYA6	4.6e-29	88.24	uncharacterized protein LOC111439917 OS=Cucurbita moschata OX=3662 GN=LOC1114399...	[more]
A0A5D3DZA2	3.0e-28	88.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LUS9	3.0e-28	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1	[more]
A0A6J1C3X8	3.0e-28	88.24	uncharacterized protein LOC111007177 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Sed0007605.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57123.1	6.8e-17	58.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	4.9e-15	53.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10695.1	4.7e-10	41.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 28..85
None	No IPR available	PANTHER	PTHR33320:SF13	SUBFAMILY NOT NAMED	coord: 28..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0007605	Sed0007605	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007605.1-exon	Sed0007605.1-exon-LG12:32259602..32259853	exon
Sed0007605.1-exon	Sed0007605.1-exon-LG12:32259965..32260369	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007605.1-three_prime_utr	Sed0007605.1-three_prime_utr-LG12:32259602..32259853	three_prime_UTR
Sed0007605.1-three_prime_utr	Sed0007605.1-three_prime_utr-LG12:32259965..32259980	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007605.1-cds	Sed0007605.1-cds-LG12:32259981..32260247	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007605.1-five_prime_utr	Sed0007605.1-five_prime_utr-LG12:32260248..32260369	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0007605.1	Sed0007605.1-protein	polypeptide