Sed0006285.1 (mRNA) Chayote v1

Overview


Name	Sed0006285.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 9747631 .. 9751362 (+)
Sequence length	231
RNA-Seq Expression	Sed0006285.1
Synteny	Sed0006285.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCCCACCTTCAGTTGCAAACCCATTACTGAAAAATGTGGCTGCAACTCAAGCCTGTGATATCTCCACTCCTACACAACTATCATTGACAACAGATGCTTTAGCCCAATGTCAGAATATTATGCAGATGCTTCAAGCTAAGTTGAATGCATCCAAGATTGAACCTGAAATTTATTCTGCACATCTTGCAGGTAAGAGAAATTACCTTATGTCTCTTTCCTCTCATATCTGTTTTCACCGCCCTACCTTTGTGACTTTAGTTCCCATTAGTACTACTGTTGTATTGATCGATAACAATCATATTCATGTTGGTTTTGCTGGATCTATTTTTCTTTCTGGATTTGTTTGGCTGCATCATGTTTTATTGTCGATGAGTTGCCTTACTTGTGACAAATCAGTACTTGTTGGTTTTTTTGCTGATTTTTGTGAACTCCAAGAAAGGTCCACTTTGAGGACGATTGCGATCGCCTATACATACTTGAGGCTGCTCCAACTATTTCAATTGTTGCTTCAGCCAGACATCCGAAAGCTGCTCTATGGCATTCTAGATTAGGTCACATTTCATGTTCTAGACTACTTGTAATGAAGAATAGTTTACAAATAGACCCTATTCATCACAATGATTTTTTTTCATTGTGAAGTTTGTCCTCTTGCTAACAGAGGAAGTTACCCTTTGTATCAAATAACAATTTGTCTTTTCAAATTTTTTATCTAATACATGCCGACATTTGGGGCCCTTTTTTCCATTGTGTCTACAAATGGTTATCATTTCTTCTTGACTCTAGTAGATGATTGTTCTCGATACACTTGAATTTACCTGTTAAAACAAAAATCCGATGTGCTCACCATAATACCACAGTTCTGTCAATTAGTTGCCACTCAATTTGAGAAAAATATAAAAGTTTTTCGCTTTGACAATGCTCCGGAGTTAAAATTTGAAAGTTTTTTTCTTGGCAAAGGGGTTCAACATCAGTACTATTGCGTTGCCAGACTCGAGCAAAATTCCGTTGTTGAAAGAAAACATAAACATCTTTTAAAATATTGCTCATTCTCTCTTCTTTTATGGTCCAAATGTGTTTTAACTGCTAGCTATCTGATTAATCGTAGTCCATCTCCTCTACTCAAATGGTCTACTCCTTATCAGATACTTCATGCGCATTTTCCACACTACATCAATTTTAGAGTCTTTGGATGCTTGCCCTATGTATCGACATTGGCTCATAATCGACACAAATTTGAACTACGTGCTATCCCAGCTATTTTTGTTGGTTATCCACCGGGATTGAAAGCTTACAAGTTATATGATGTTGAAAAAGGTGTATTCTTCATATCACGAGATGTATTTCATGAGGAAATATTCTCCTTCCACAAAGTCACTTCCTCCAATGAGTAACTTTAATAATTTCTTGACCTTGTCCTACCTAAACCTGTTGATATTGACATTTCCAAACTCAATACCACTACATCTTTCACATCCACTACCTCACCAGCAGACTATCTAATTTCCACTCATGCTACCCCATCAATTGGCTTCCCTTTACAACCAAATGATAGTTTCTCGTTTGATTCTCATATATATCATTAAAATGAACACAACCAGCTTCTATCTCATTCACCTTTGTCGACACCACCTGAGATTCCTATTCCTCAGCCTCGTCGATTTACCAGACCCCACAATAGACCATTCTATCTTGGTGAATATCACTGTCACCTTTTGACCAACACCCCTATACCTCATTATCAAACTCGATATCCTATCCAAAATTGCCTTACATATGACAAATAAGCACCTTCCTTTCGCACCTTCACTCTAAATATATCCACCCATTTTGAGCCACAACAATACCACCAAGCCATCCCTCATGCTCATTGGAATTAGCCTATTAAGGCCGAAATACAGGCTATGAAAGACAAGAAAACCTGGTCAGCCGTTCCTCTTCCTCCTGGTAAACATTTCATTGATTGCAAATGGATTTATAAAATCAAACATAAGGTTGATGGCTCCATTGAACGGTACAAGGCAAGGTTAGTTGCTAGAGGATTCACTCAGCAAGAAGGCCTCAACTTCTTTGAAACCTTTCTTCTTGTTGCCAAGATGGTTACCGTTCGAGTATTACTCACCATGGTTGTCTCTCTCCATTGGCCCCTTATCCAACTCGACGTTAATAACGCCTTTCTCTATGGCCATCTTCTCGAAGAGGTGTTTATGGACTTACCTTTGGGATATAGACATCAATCCCTTGTTTCAGGTCAAGGGGAGAAATTAGTTTGCAAGCTATACAAATCTATATATGGCCTAGAACAAGCATCGAGACAATGGTTCGCCAAGTTCTCTAATGCTATTATATCTCTTGGTTTTATACAATAAAAAACTTACTTCTCCTTGTTTTTTAAAGGAAATGGCTCAACCTCTGTAGCATTACTTGTTTACGTGGATGGTATCATCATCAGAGGAGCAGATGAATCCACCATAAACCAGTTGAAGCATACTCTTCATGAGAAATTCAAGCTCAAGGACTTGAGATCTCTTAAATATTTCCTTGGCTTAGAATTAGCAAGGTCTAATGCAGGAATTTACCTCTTACAGAGGCTTTATGCTCTCCAGCTAGTAGAAGATTCCAGACTCTTTGGCTGCAAACTGGAGCCGTTACCCATGGATCATTTGGTTAAACTAAAACAGGATGACTCAGAGTTGTTAAAAGATGTTTCCTTGTATAGGAAATTAATTGGAAAATTACTATATTTAACCATCTCTCGACCGAATATCACATTCACAGTGAATAGACTGAGTCAATTCGTCTCAAAACCAAACAAAAACCATCTCGTAGCAGCATACCATTTGATTCGCTACATATAGGGATCACCCGACTAAGGAATTTTATTGAAGGCCTCAAGTAATTTTCAATTACGGGCTTTCTCTAACTCTGATTGGGCAGCCTGCCCAATCAATCGAAGATTCACTATAGGATATTGTGTTTATCTTGGAGAATCTATGGTCTCATGGAAATCAAAATCAAAGAAGCAAACTACAATATCTAGATCCTCAACGGAAGTAGCATATAGAGCTCTGACTCTAGCCACCAGTGAACTTGTATGGTTAGTTTCATTATTGACTGAGCTGAAAATCAACACAACCAAACCAGTTCTATTATGTGGCAATTTGGCAGCAATGCATATAGCTTAAAATCCAACATTTCACGAGCGTACAAAACATATAGAACTTGACTGCCATTTTGTTCGAGACAAGCTCCAAGAAGGTTTTCTGCGACTTCTTTCCATATGGTCTCACCAAAAGCTTTCAGATGTCTTCACAAAGATGCTCCCGGCTCAAATATTATTTCCTTTAATAAACAAGATGGGTTTTTCTAATATACACGGTCCATCTTGAGGGGGAGTATTAGAGTTTTATCCAAAATTGTATATACCTAGAAAGTATTAGTTAGATTGTTAGTTCCCTAACCACATTTGGTTAGACTAGAAAACTTTAACGTGCAATGCACGTGTTTATATTTTGATAAATATATTCCTTTTCAAATCACTAAGTCTTCTCTCTATTCTATTTCCAATATAACTTTCTTCATCATATTTCAATCTATTTATTTAAATTTTGTTTTAATTCTAATAATCGAATAAAATACATGTTTCTTGTTAGAAAAAAATTATAACTAAAGTATCTTTAATTTATTTTTAAGATAATAAATATATAGTAGGGGAATTGAAACTTTGA

mRNA sequence

ATGGCTGCCCCACCTTCAGTTGCAAACCCATTACTGAAAAATGTGGCTGCAACTCAAGCCTGTGATATCTCCACTCCTACACAACTATCATTGACAACAGATGCTTTAGCCCAATGTCAGAATATTATGCAGATGCTTCAAGCTAAGTTGAATGCATCCAAGATTGAACCTGAAATTTATTCTGCACATCTTGCAGATAATAAATATATAGTAGGGGAATTGAAACTTTGA

Coding sequence (CDS)

ATGGCTGCCCCACCTTCAGTTGCAAACCCATTACTGAAAAATGTGGCTGCAACTCAAGCCTGTGATATCTCCACTCCTACACAACTATCATTGACAACAGATGCTTTAGCCCAATGTCAGAATATTATGCAGATGCTTCAAGCTAAGTTGAATGCATCCAAGATTGAACCTGAAATTTATTCTGCACATCTTGCAGATAATAAATATATAGTAGGGGAATTGAAACTTTGA

Protein sequence

MAAPPSVANPLLKNVAATQACDISTPTQLSLTTDALAQCQNIMQMLQAKLNASKIEPEIYSAHLADNKYIVGELKL

Homology

The following BLAST results are available for this feature:

BLAST of Sed0006285.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0006285.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0006285.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0006285.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0006285	Sed0006285	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006285.1-exon	Sed0006285.1-exon-LG13:9747631..9747826	exon
Sed0006285.1-exon	Sed0006285.1-exon-LG13:9751328..9751362	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006285.1-cds	Sed0006285.1-cds-LG13:9747631..9747826	CDS
Sed0006285.1-cds	Sed0006285.1-cds-LG13:9751328..9751362	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0006285.1	Sed0006285.1-protein	polypeptide