Sed0004116.2 (mRNA) Chayote v1

Overview


Name	Sed0004116.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG11: 5085933 .. 5087777 (-)
Sequence length	723
RNA-Seq Expression	Sed0004116.2
Synteny	Sed0004116.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTATGATATTAATGGCGACCTGCTTCTTGTTTGCTAAAAGTGAGACTATGCTTCATCGATTTCCGTGTCTTTGTTTTGTTTTCTTGTTCTTTGGCTTTTCTGCTTCGTTGATCGTGTTTTCATCCTGAAACGAAGTGTTTAATGTCTGCACTGATGATCTAACATTACAGATTTCTCTGAAAATGGTGGTTTCTTGTAGTCGTGAGGTTTTAAGCAGGTTCTCACTCTCAGAATTGGATATTATATAATTAGAAATCGTTCTTTGAATCATTGTTTATGTACTTTATTTGTTAATTTAGTTATTTTTGTTGTATTCGATGTTTCGTTGTTGAGGAGAGAAGAAATGGATTGTGAAAATGACACTATTGATTTAGTAATGAATCTTGTTGGTGTTGCGATGTTATATTACATTAATGTTGTACATAGTGGAAGAAATGGTTGACAATCAGAAGTTCTAATTTGAAAAGATGATGATGGGAAGACAGGAATCAGTAGTAGCTGGAAATACTTTTGTCTCAAACTATATTATGAGGGACATTGCCTTCAAAACAAGTCTAATAGTTTACATTAAGAAAACCCAAGCAGCCATGGATTCAAAAAACGAAGTTTACACCAAAAGAAGGAAGACCTACAATTCTGCTAGGCTATGGAGTCAGCTTAGGTTCAGCCTCATAATACCAGACTATGAGTGTATTAGATTTAGATTTATACCCTCTGGTCACATTTGTTCCATAGCAAAGAAAAATTTGTCTAACTTTTTGGAGTTGGGAGGAGGAATAGTTAAGATTTGGAAAAGGGTCCTTTCTATGAAGTGAATTGTGAGTGACATAAGCTTGATCCTTAAGAGTATTATTGTTTGCACCATATGCATATACATGATGCAGGATAAGCTTGATCTGAGAGCTAGAAAGTTTATTCCTTGTAGGAGTTGAAATAAAAGTCATATACCAAGTTAGAAGCTAATATTCTGTCATTTTTTGTCACATTTTCTGTTGAGTTAAATCCTATTTTGGTTCACTCTGCTCTTGTTATTGCGTTTTATCTTTCTTGATTTCAGAATTTGGTGTAACTAGTTTGATTTAAACTTTCAATGTGCCTATTTCTTATCTTTTGCATGGCATCTATCATACAGACATTCAAATTTTACATACCAAAGCTCTAATTCCACCTACTCACATTTGCTTGAAGCTGTTTATAATTCTTGTTTTTGAATCCATGGTTCATATTTAGTATGATTAAAATGATATTGACATACTTTAATTTCACTTATAAGCCAATTGCTCTTAACATCAATTATGAAACTTGACATGCCAATAATCTTTACTTTTTGTTGTGTTAGGAAATCGCAGCAATGTCAGGAAAGCACCTTCATCAATGGTGCCGCAACCAAAGTTATGATTATGACAGTGATAGCGATAGCGATGACTATTCATACAATCCTCCATGTCAAGAAGTAATTCAGCCAAGAACTGCATATGCGGTTTCTGCAAATGCACCTCCAGTTGTTCGTGTAGAAGGCAACCAGATCAGTAACTACGAACAGACTTGGAGGAGTCATGATCGTAACAGGAAAACCGGAACGTATAGGACCCAATCAATGAAGGAGGTTGCTTCTCATGGTGATACTTTTAAAGAGAGGTCAACTGGCAGAGTTGGCTCCAAAGATGAGTTCAAAACTACCTCCACCTACAGGGTCGGCGACAAAAGTGGATATTCTGAGTATCAGTATCAGGAGAGGTACCGTCGAGTTGATTTTGGCGGTAACAATGGTAGCAGCAGCGGCGGATCCGGAAGTAAGGGAGGATACAGCAACTATTCAACTTCCAAAAAGTATCTCAAATGA

mRNA sequence

CATTATGATATTAATGGCGACCTGCTTCTTGTTTGCTAAAAGTGAGACTATGCTTCATCGATTTCCGTGTCTTTGTTTTGTTTTCTTGTTCTTTGGCTTTTCTGCTTCGTTGATCGTGTTTTCATCCTGAAACGAAGTGTTTAATGTCTGCACTGATGATCTAACATTACAGATTTCTCTGAAAATGGTGGTTTCTTGTAGTCGTGAGGTTTTAAGCAGGAAATCGCAGCAATGTCAGGAAAGCACCTTCATCAATGGTGCCGCAACCAAAGTTATGATTATGACAGTGATAGCGATAGCGATGACTATTCATACAATCCTCCATGTCAAGAAGTAATTCAGCCAAGAACTGCATATGCGGTTTCTGCAAATGCACCTCCAGTTGTTCGTGTAGAAGGCAACCAGATCAGTAACTACGAACAGACTTGGAGGAGTCATGATCGTAACAGGAAAACCGGAACGTATAGGACCCAATCAATGAAGGAGGTTGCTTCTCATGGTGATACTTTTAAAGAGAGGTCAACTGGCAGAGTTGGCTCCAAAGATGAGTTCAAAACTACCTCCACCTACAGGGTCGGCGACAAAAGTGGATATTCTGAGTATCAGTATCAGGAGAGGTACCGTCGAGTTGATTTTGGCGGTAACAATGGTAGCAGCAGCGGCGGATCCGGAAGTAAGGGAGGATACAGCAACTATTCAACTTCCAAAAAGTATCTCAAATGA

Coding sequence (CDS)

ATGTCAGGAAAGCACCTTCATCAATGGTGCCGCAACCAAAGTTATGATTATGACAGTGATAGCGATAGCGATGACTATTCATACAATCCTCCATGTCAAGAAGTAATTCAGCCAAGAACTGCATATGCGGTTTCTGCAAATGCACCTCCAGTTGTTCGTGTAGAAGGCAACCAGATCAGTAACTACGAACAGACTTGGAGGAGTCATGATCGTAACAGGAAAACCGGAACGTATAGGACCCAATCAATGAAGGAGGTTGCTTCTCATGGTGATACTTTTAAAGAGAGGTCAACTGGCAGAGTTGGCTCCAAAGATGAGTTCAAAACTACCTCCACCTACAGGGTCGGCGACAAAAGTGGATATTCTGAGTATCAGTATCAGGAGAGGTACCGTCGAGTTGATTTTGGCGGTAACAATGGTAGCAGCAGCGGCGGATCCGGAAGTAAGGGAGGATACAGCAACTATTCAACTTCCAAAAAGTATCTCAAATGA

Protein sequence

MSGKHLHQWCRNQSYDYDSDSDSDDYSYNPPCQEVIQPRTAYAVSANAPPVVRVEGNQISNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDKSGYSEYQYQERYRRVDFGGNNGSSSGGSGSKGGYSNYSTSKKYLK

Homology

[Close]

BLAST of Sed0004116.2 vs. NCBI nr
Match: XP_022157391.1 (uncharacterized protein LOC111024099 [Momordica charantia])

HSP 1 Score: 187.6 bits (475), Expect = 8.7e-44
Identity = 109/164 (66.46%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MSGKHLHQWCRNQSYDYDSDSDSDDYSYNPPCQEV-IQPRTAYAVSANAPPVVRVEGNQI 60
           MSGK L QW  +Q YDY    DSDDYSY+PP Q   IQPR  YA       VV  E NQ 
Sbjct: 1   MSGKQLDQWSGDQDYDY----DSDDYSYDPPSQGYEIQPRCGYA-------VVVQEDNQA 60

Query: 61  SNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDKS 120
           S YE++WR HDR+R+TG Y+T S KEVAS G+TFKERSTGRVG KDEFKTTST RVGD+S
Sbjct: 61  SRYEKSWRCHDRDRQTGNYKTASTKEVASRGETFKERSTGRVGYKDEFKTTSTCRVGDRS 120

Query: 121 GYSEYQYQERYRRVDFGGNNGSSSGGSGSKGGYSNYSTSKKYLK 164
           GY+EYQ QE YRRVDFG      S GSGSKGG SNYS+SKKYLK
Sbjct: 121 GYTEYQRQETYRRVDFG------SSGSGSKGGQSNYSSSKKYLK 147

[Close]

BLAST of Sed0004116.2 vs. NCBI nr
Match: XP_022997473.1 (uncharacterized protein LOC111492379 [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-38
Identity = 98/154 (63.64%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 1   MSGKHLHQWCRN-QSYDYDSDSDSDDYSYNPPCQEVIQ-PRTAYAVSANAPPVVRVEGNQ 60
           MSGK L QW    QSYDY    D DDYSY+PP Q  +Q  R  Y        VV  E  Q
Sbjct: 1   MSGKQLDQWGSGYQSYDY----DLDDYSYSPPSQGNVQVARMGYV------GVVSAEDKQ 60

Query: 61  ISNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDK 120
           +S+YEQ+WR+HDRNR+TG+Y T S KEVAS G+TFKERS+GRVGSKDEFKTTSTYRVGD+
Sbjct: 61  VSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR 120

Query: 121 SGYSEYQYQERYRRVDFG-GNNGSSSGGSGSKGG 152
           SGY+EYQ+QER+RRVDFG G++ S  G +GSKGG
Sbjct: 121 SGYTEYQHQERFRRVDFGSGSSSSIRGSAGSKGG 144

[Close]

BLAST of Sed0004116.2 vs. NCBI nr
Match: KAG7029798.1 (hypothetical protein SDJN02_08141, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 97/156 (62.18%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 1   MSGKHLHQWCRN-QSYDYDSDSDSDDYSYNPPCQEVIQ-PRTAYAVSANAPPVVRVEGNQ 60
           MSGK L QW    QSY    D D DDYSY+PP Q  +Q  R  Y        VV  E  Q
Sbjct: 6   MSGKQLDQWGNGYQSY----DDDLDDYSYSPPLQGNVQVARIGYV------GVVSAEVKQ 65

Query: 61  ISNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDK 120
           +S+YEQ+WR+HDRNR+TG+Y T S KEVAS G+TFKERS+GRVGSKDEFKTTSTYRVGD+
Sbjct: 66  VSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR 125

Query: 121 SGYSEYQYQERYRRVDFGGNNGSSS---GGSGSKGG 152
           SGY+EYQ QER+RRVDFG    SS+   G +GSKGG
Sbjct: 126 SGYTEYQRQERFRRVDFGSGGSSSNSIRGSAGSKGG 151

[Close]

BLAST of Sed0004116.2 vs. NCBI nr
Match: KAG6598857.1 (hypothetical protein SDJN03_08635, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-36
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 0


Query: 1   MSGKHLHQWCRN-QSYDYDSDSDSDDYSYNPPCQEVIQ-PRTAYAVSANAPPVVRVEGNQ 60
           MSGK L QW    QSY    D D DDYSY+PP Q  +Q  R  Y        VV  E  Q
Sbjct: 32  MSGKQLDQWGNGYQSY----DDDLDDYSYSPPLQGNVQVARIGYV------GVVSAEVKQ 91

Query: 61  ISNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDK 120
           +S+YEQ+WR+HDRNR+TG+Y T S KEVAS G+TFKERS+GRVGSKDEFKTTSTYRVGD+
Sbjct: 92  VSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR 151

Query: 121 SGYSEYQYQERYRRVDFGGNNGSSS---GGSGSKG 151
           SGY+EYQ QER+RRVDFG    SS+   G +GSKG
Sbjct: 152 SGYTEYQRQERFRRVDFGSGGSSSNSIRGSAGSKG 176

[Close]

BLAST of Sed0004116.2 vs. NCBI nr
Match: XP_022929740.1 (uncharacterized protein LOC111436237 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-35
Identity = 91/145 (62.76%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MSGKHLHQWCRN-QSYDYDSDSDSDDYSYNPPCQEVIQ-PRTAYAVSANAPPVVRVEGNQ 60
           MSGK L QW    QSY    D D DDYSY+PP Q  +Q  R  Y        VV  E  Q
Sbjct: 1   MSGKQLDQWGNGYQSY----DDDLDDYSYSPPLQGNVQVARIGYV------GVVSAEVKQ 60

Query: 61  ISNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDK 120
           +S+YEQ+WR+HDRNR+TG+Y T S KEVAS G+TFKERS+GRVGSKDEFKTTSTYRVGD+
Sbjct: 61  VSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR 120

Query: 121 SGYSEYQYQERYRRVDFGGNNGSSS 144
           SGY+EYQ QER+RRVDFG    SS+
Sbjct: 121 SGYTEYQRQERFRRVDFGSGGSSSN 135

[Close]

BLAST of Sed0004116.2 vs. ExPASy TrEMBL
Match: A0A6J1DXX9 (uncharacterized protein LOC111024099 OS=Momordica charantia OX=3673 GN=LOC111024099 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.2e-44
Identity = 109/164 (66.46%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MSGKHLHQWCRNQSYDYDSDSDSDDYSYNPPCQEV-IQPRTAYAVSANAPPVVRVEGNQI 60
           MSGK L QW  +Q YDY    DSDDYSY+PP Q   IQPR  YA       VV  E NQ 
Sbjct: 1   MSGKQLDQWSGDQDYDY----DSDDYSYDPPSQGYEIQPRCGYA-------VVVQEDNQA 60

Query: 61  SNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDKS 120
           S YE++WR HDR+R+TG Y+T S KEVAS G+TFKERSTGRVG KDEFKTTST RVGD+S
Sbjct: 61  SRYEKSWRCHDRDRQTGNYKTASTKEVASRGETFKERSTGRVGYKDEFKTTSTCRVGDRS 120

Query: 121 GYSEYQYQERYRRVDFGGNNGSSSGGSGSKGGYSNYSTSKKYLK 164
           GY+EYQ QE YRRVDFG      S GSGSKGG SNYS+SKKYLK
Sbjct: 121 GYTEYQRQETYRRVDFG------SSGSGSKGGQSNYSSSKKYLK 147

[Close]

BLAST of Sed0004116.2 vs. ExPASy TrEMBL
Match: A0A6J1KE05 (uncharacterized protein LOC111492379 OS=Cucurbita maxima OX=3661 GN=LOC111492379 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.0e-38
Identity = 98/154 (63.64%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 1   MSGKHLHQWCRN-QSYDYDSDSDSDDYSYNPPCQEVIQ-PRTAYAVSANAPPVVRVEGNQ 60
           MSGK L QW    QSYDY    D DDYSY+PP Q  +Q  R  Y        VV  E  Q
Sbjct: 1   MSGKQLDQWGSGYQSYDY----DLDDYSYSPPSQGNVQVARMGYV------GVVSAEDKQ 60

Query: 61  ISNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDK 120
           +S+YEQ+WR+HDRNR+TG+Y T S KEVAS G+TFKERS+GRVGSKDEFKTTSTYRVGD+
Sbjct: 61  VSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR 120

Query: 121 SGYSEYQYQERYRRVDFG-GNNGSSSGGSGSKGG 152
           SGY+EYQ+QER+RRVDFG G++ S  G +GSKGG
Sbjct: 121 SGYTEYQHQERFRRVDFGSGSSSSIRGSAGSKGG 144

[Close]

BLAST of Sed0004116.2 vs. ExPASy TrEMBL
Match: A0A6J1EV61 (uncharacterized protein LOC111436237 OS=Cucurbita moschata OX=3662 GN=LOC111436237 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 91/145 (62.76%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MSGKHLHQWCRN-QSYDYDSDSDSDDYSYNPPCQEVIQ-PRTAYAVSANAPPVVRVEGNQ 60
           MSGK L QW    QSY    D D DDYSY+PP Q  +Q  R  Y        VV  E  Q
Sbjct: 1   MSGKQLDQWGNGYQSY----DDDLDDYSYSPPLQGNVQVARIGYV------GVVSAEVKQ 60

Query: 61  ISNYEQTWRSHDRNRKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDK 120
           +S+YEQ+WR+HDRNR+TG+Y T S KEVAS G+TFKERS+GRVGSKDEFKTTSTYRVGD+
Sbjct: 61  VSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR 120

Query: 121 SGYSEYQYQERYRRVDFGGNNGSSS 144
           SGY+EYQ QER+RRVDFG    SS+
Sbjct: 121 SGYTEYQRQERFRRVDFGSGGSSSN 135

[Close]

BLAST of Sed0004116.2 vs. ExPASy TrEMBL
Match: A0A5D3CHW8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00440 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.0e-34
Identity = 94/151 (62.25%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 13  QSYDYDSDSDSDDYSYNPPCQEVIQPRTAYAVSANAPPVVRVEGNQISNYEQTWRSHDRN 72
           Q+YDYD    SDDYSYN   +  +Q    Y         V  + NQ+S+YEQ+WR+HDRN
Sbjct: 13  QNYDYDY---SDDYSYNQGSE--VQATIGYL-------EVVEDNNQMSSYEQSWRTHDRN 72

Query: 73  RKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDKSGYSEYQYQERYRR 132
           R+TG+Y T S K VAS G+TFKERSTGRVG+KDEFKTTSTYRVGDKSGY+EYQ QER+RR
Sbjct: 73  RQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRR 132

Query: 133 VDFGGNNGSSSGGSGSKGGYSNYSTSKKYLK 164
           VDFGG    SS GSGSKGG  N     KYLK
Sbjct: 133 VDFGG----SSSGSGSKGGKGN-----KYLK 142

[Close]

BLAST of Sed0004116.2 vs. ExPASy TrEMBL
Match: A0A5A7VGP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00800 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.1e-34
Identity = 94/151 (62.25%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 13  QSYDYDSDSDSDDYSYNPPCQEVIQPRTAYAVSANAPPVVRVEGNQISNYEQTWRSHDRN 72
           Q+YDYD    SDDYSYN   +  +Q    Y         V  + NQ+S+YEQ+WR+HDRN
Sbjct: 13  QNYDYDY---SDDYSYNQGPE--VQATIGYL-------EVVEDNNQMSSYEQSWRTHDRN 72

Query: 73  RKTGTYRTQSMKEVASHGDTFKERSTGRVGSKDEFKTTSTYRVGDKSGYSEYQYQERYRR 132
           R+TG+Y T S K VAS G+TFKERSTGRVG+KDEFKTTSTYRVGDKSGY+EYQ QER+RR
Sbjct: 73  RQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRR 132

Query: 133 VDFGGNNGSSSGGSGSKGGYSNYSTSKKYLK 164
           VDFGG    SS GSGSKGG  N     KYLK
Sbjct: 133 VDFGG----SSSGSGSKGGKGN-----KYLK 142

The following BLAST results are available for this feature:

BLAST of Sed0004116.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157391.1	8.7e-44	66.46	uncharacterized protein LOC111024099 [Momordica charantia]	[more]
XP_022997473.1	4.2e-38	63.64	uncharacterized protein LOC111492379 [Cucurbita maxima]	[more]
KAG7029798.1	1.7e-36	62.18	hypothetical protein SDJN02_08141, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598857.1	5.1e-36	61.94	hypothetical protein SDJN03_08635, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929740.1	3.3e-35	62.76	uncharacterized protein LOC111436237 [Cucurbita moschata]	[more]

BLAST of Sed0004116.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004116.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXX9	4.2e-44	66.46	uncharacterized protein LOC111024099 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1KE05	2.0e-38	63.64	uncharacterized protein LOC111492379 OS=Cucurbita maxima OX=3661 GN=LOC111492379...	[more]
A0A6J1EV61	1.6e-35	62.76	uncharacterized protein LOC111436237 OS=Cucurbita moschata OX=3662 GN=LOC1114362...	[more]
A0A5D3CHW8	3.0e-34	62.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGP1	5.1e-34	62.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0004116.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..163

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0004116	Sed0004116	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004116.2-cds	Sed0004116.2-cds-LG11:5085933..5086424	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004116.2-exon	Sed0004116.2-exon-LG11:5085933..5086436	exon
Sed0004116.2-exon	Sed0004116.2-exon-LG11:5087559..5087777	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0004116.2-five_prime_utr	Sed0004116.2-five_prime_utr-LG11:5086425..5086436	five_prime_UTR
Sed0004116.2-five_prime_utr	Sed0004116.2-five_prime_utr-LG11:5087559..5087777	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0004116.2	Sed0004116.2-protein	polypeptide