Sed0002973.3 (mRNA) Chayote v1

Overview


Name	Sed0002973.3
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RING-CH-type domain-containing protein
Location	LG10: 1296090 .. 1298642 (-)
Sequence length	2456
RNA-Seq Expression	Sed0002973.3
Synteny	Sed0002973.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAATCACATCCAATTGGAGACGACCCAGAAGCCAAATCTTCTTCATTTATTGTTTTTATTCTTCAATTTACCAAGTAAACGCTTCCCACTGAAGAAAAAAATTTGGGTTTCCAAATAAAAAAGCTCTCCCCAGCAACAAAGCATTGATATCTTCCATTGGCGAAAAGAAAAGTTGTAAGCAAATGATGCTTCTTTATTTAAAGTGAATACTTGGGGTTTTTAGATGGAACCATGTTTCTCCCTTTTCGTTATTAGTTTTGTTAGTTGAAAAACTGAGTTTTGGGAAATTTTGTTTTCGATTCATGGATGAAGAAGAAAGAAATCGCCAAGAAGGTGTATTGTTTGAAACAGGGCTGCCTAAATCCACTGTTGATTTGGTTAACGAGGATAAGATCGAGGCCAGCGTTGTGATAATCCCAGAAGCTATATCAAATGTTAATCCAGAAACAAGAGAGGATTCAAACCCTTTGGAAACTGTGGTGGTTATTGATTCAGACGAAGAATCGGTTGCGAAGAACAGTGGAATGGGGCTGAGAAAGGATATGGAAAAGATGGATGTGAAGTCAAAGATGTTGGCAAATGTAAAGCCAAAAGGGTGTAAAGGGTTTATGGAAGAGTTGAATGGAGAAAGGGTATGTAGGATCTGCCACTTGGGTTCCAACCAAGCTTCAGAGTTGGTTCAACTTGGTTGTGACTGTAAACATGAGCTTGGAATTGCTCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGGTTGGTTTAAAATGAAGTTTTTGTGCCTTTTTGTTTTGCTGGTATCTTAGGATTTGGTATTGACATTTGATGAAGTTTTGTGATTTTGAATTGTTAGGAACCACCTACTCTACCCGAGACCCTCCACATTGAAGTGATATTGTCCACTTTGGGCATAACCCTCATGGCTTTGTTTTTGGGCATCTCCCAAAAGGGGCTCATACCAATGGAGGCTCTGGTCATCCCATTTATACCCATGAACTTTCCCCTCTCTTTCCCATGTGGGACAATTGGTTGCAATACCAACATGAATGTATATCTTTGTTCTCTTGTTGTAACTTGTAGCTGCTAATCCTACCATTAGTCCCCAAACCTGGGTTTCTAAGGTGTATTCCCCTCAAAATTCCACTGTGACATTAATTTGTAAGCCTCCCGTGTCTTCATTTCTTCTATGTTTCTCGGTGCTTGGCCTAGGGATAGGCGTGGTTACCTCGTAATTCCCAGTTTCCAAAAGACAAAATCCGGCAATTAACCAAAACTTTTATCTTCCCTCATTTGTTTCAGAAAATAGTTTTTTTTTTTACACTTTTTGCCTATCGAAGGATTGCCCAATTGAGTTTTAGTAACCTGTTAAAATAGATGAAAAGCCCTTCTATTTCTGTAGATTGAGGAGAATAAGCTACAAAAAGGAAAATAAAGCCAACTTACTAATATGGGGAGAAATGTTTCAGGTTGCATCCATTCTTTTATTTGTTTCTGTTATCTAGAAGACATGAGCCATTACACAATCAATAGAATGAAGCAGTGACATAAAAATGTAGTTATGTAAAGGGGCTAAAATATGGTTCTATGATATTATGAAAGGGGGTATGGAAGGTTTATTTTTCTGCCTTTTCCAATGGGAGGTTTTTAGTTCGGTGGTTTGTAACTTTGTAGTCGCCTCAACGAATCTTAACAGGTTTTATTTTCCGGGTAGTAACTACGGTCTACGCATATTAAGTTTTTTGGTTCAAACTTACAGACTTCCATTTTCCTGGTGTAGAGAGTGATAGTTGGTGTCTGATTATGTTTATACAACTCGATGATAGATCATAAATGTAAAGATAAGTTTCTGTTTCTTTTGGTAATTCAGTTACAAACTGCCAAATGGATTTTTGAAGTATAGCTCTCTTATGTTGAGACTATATGCTTTCGATGAAGTCGAAATGCTGCAGAAGAGATCGAGTATTGAACGGTTTCACATTGATCAAGTCAAATGTTTTTTGTATACATTTGTATCAGTATGTGATAAGTATAAAGAAAAGAGCTCAAAACCACTGCATGTCATTTGGCAACTCCTGGAGATTTAATTTCAAACTACAATTTTCTTTTCATTTTGTCAAATGACTATCGATTATATGATCATAATCATCTAGTCTTTTTCCTTAATACAGAATGTGCGAAATTTGCGGCGAGATTGCTAAGAACGTTGAAGGAGTCGGGGACAGTAGATTTATGGAAGAGTGGAACGAGGGAAGGTCGGTAGATAGCAATGGAAACATATCAAGCAGAGGCTGGGGATGTTGGAGAGGACAGCCATTCTGTAACTTCTTGATGGCATGTTTGGTAATAGCCTTTGTTCTTCCATGGTTTCTTCGCGTAAACATTTTCTAGCAAGTGTCGAATAATTGAAAGAGGGCCTTGGAGTGCTTAATGGCCACCTATCTAAGAATTAATTTTCTACGAGATTCCTTGACATCCAAATGTGGTAGGGTCAGACGGTATATCTCGTGACATTAGTCGAGGTGCGCACAAGTACAATCACGGA

mRNA sequence

ATTTTAATCACATCCAATTGGAGACGACCCAGAAGCCAAATCTTCTTCATTTATTGTTTTTATTCTTCAATTTACCAAGTAAACGCTTCCCACTGAAGAAAAAAATTTGGGTTTCCAAATAAAAAAGCTCTCCCCAGCAACAAAGCATTGATATCTTCCATTGGCGAAAAGAAAAGTTGTAAGCAAATGATGCTTCTTTATTTAAAGTGAATACTTGGGGTTTTTAGATGGAACCATGTTTCTCCCTTTTCGTTATTAGTTTTGTTAGTTGAAAAACTGAGTTTTGGGAAATTTTGTTTTCGATTCATGGATGAAGAAGAAAGAAATCGCCAAGAAGGTGTATTGTTTGAAACAGGGCTGCCTAAATCCACTGTTGATTTGGTTAACGAGGATAAGATCGAGGCCAGCGTTGTGATAATCCCAGAAGCTATATCAAATGTTAATCCAGAAACAAGAGAGGATTCAAACCCTTTGGAAACTGTGGTGGTTATTGATTCAGACGAAGAATCGGTTGCGAAGAACAGTGGAATGGGGCTGAGAAAGGATATGGAAAAGATGGATGTGAAGTCAAAGATGTTGGCAAATGTAAAGCCAAAAGGGTGTAAAGGGTTTATGGAAGAGTTGAATGGAGAAAGGGTATGTAGGATCTGCCACTTGGGTTCCAACCAAGCTTCAGAGTTGGTTCAACTTGGTTGTGACTGTAAACATGAGCTTGGAATTGCTCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGGAACCACCTACTCTACCCGAGACCCTCCACATTGAAGTGATATTGTCCACTTTGGGCATAACCCTCATGGCTTTGTTTTTGGGCATCTCCCAAAAGGGGCTCATACCAATGGAGGCTCTGGTCATCCCATTTATACCCATGAACTTTCCCCTCTCTTTCCCATGTGGGACAATTGGTTGCAATACCAACATGAATGTATATCTTTGTTCTCTTGTTGTAACTTGTAGCTGCTAATCCTACCATTAGTCCCCAAACCTGGGTTTCTAAGGTGTATTCCCCTCAAAATTCCACTGTGACATTAATTTGTAAGCCTCCCGTGTCTTCATTTCTTCTATGTTTCTCGGTGCTTGGCCTAGGGATAGGCGTGGTTACCTCGTAATTCCCAGTTTCCAAAAGACAAAATCCGGCAATTAACCAAAACTTTTATCTTCCCTCATTTGTTTCAGAAAATAGTTTTTTTTTTTACACTTTTTGCCTATCGAAGGATTGCCCAATTGAGTTTTAGTAACCTGTTAAAATAGATGAAAAGCCCTTCTATTTCTGTAGATTGAGGAGAATAAGCTACAAAAAGGAAAATAAAGCCAACTTACTAATATGGGGAGAAATGTTTCAGGTTGCATCCATTCTTTTATTTGTTTCTGTTATCTAGAAGACATGAGCCATTACACAATCAATAGAATGAAGCAGTGACATAAAAATGTAGTTATGTAAAGGGGCTAAAATATGGTTCTATGATATTATGAAAGGGGGTATGGAAGGTTTATTTTTCTGCCTTTTCCAATGGGAGGTTTTTAGTTCGGTGGTTTGTAACTTTGTAGTCGCCTCAACGAATCTTAACAGGTTTTATTTTCCGGGTAGTAACTACGGTCTACGCATATTAAGTTTTTTGGTTCAAACTTACAGACTTCCATTTTCCTGGTGTAGAGAGTGATAGTTGGTGTCTGATTATGTTTATACAACTCGATGATAGATCATAAATGTAAAGATAAGTTTCTGTTTCTTTTGGTAATTCAGTTACAAACTGCCAAATGGATTTTTGAAGTATAGCTCTCTTATGTTGAGACTATATGCTTTCGATGAAGTCGAAATGCTGCAGAAGAGATCGAGTATTGAACGGTTTCACATTGATCAAGTCAAATGTTTTTTGTATACATTTGTATCAGTATGTGATAAGTATAAAGAAAAGAGCTCAAAACCACTGCATGTCATTTGGCAACTCCTGGAGATTTAATTTCAAACTACAATTTTCTTTTCATTTTGTCAAATGACTATCGATTATATGATCATAATCATCTAGTCTTTTTCCTTAATACAGAATGTGCGAAATTTGCGGCGAGATTGCTAAGAACGTTGAAGGAGTCGGGGACAGTAGATTTATGGAAGAGTGGAACGAGGGAAGGTCGGTAGATAGCAATGGAAACATATCAAGCAGAGGCTGGGGATGTTGGAGAGGACAGCCATTCTGTAACTTCTTGATGGCATGTTTGGTAATAGCCTTTGTTCTTCCATGGTTTCTTCGCGTAAACATTTTCTAGCAAGTGTCGAATAATTGAAAGAGGGCCTTGGAGTGCTTAATGGCCACCTATCTAAGAATTAATTTTCTACGAGATTCCTTGACATCCAAATGTGGTAGGGTCAGACGGTATATCTCGTGACATTAGTCGAGGTGCGCACAAGTACAATCACGGA

Coding sequence (CDS)

ATGGATGAAGAAGAAAGAAATCGCCAAGAAGGTGTATTGTTTGAAACAGGGCTGCCTAAATCCACTGTTGATTTGGTTAACGAGGATAAGATCGAGGCCAGCGTTGTGATAATCCCAGAAGCTATATCAAATGTTAATCCAGAAACAAGAGAGGATTCAAACCCTTTGGAAACTGTGGTGGTTATTGATTCAGACGAAGAATCGGTTGCGAAGAACAGTGGAATGGGGCTGAGAAAGGATATGGAAAAGATGGATGTGAAGTCAAAGATGTTGGCAAATGTAAAGCCAAAAGGGTGTAAAGGGTTTATGGAAGAGTTGAATGGAGAAAGGGTATGTAGGATCTGCCACTTGGGTTCCAACCAAGCTTCAGAGTTGGTTCAACTTGGTTGTGACTGTAAACATGAGCTTGGAATTGCTCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGGAACCACCTACTCTACCCGAGACCCTCCACATTGAAGTGA

Protein sequence

MDEEERNRQEGVLFETGLPKSTVDLVNEDKIEASVVIIPEAISNVNPETREDSNPLETVVVIDSDEESVAKNSGMGLRKDMEKMDVKSKMLANVKPKGCKGFMEELNGERVCRICHLGSNQASELVQLGCDCKHELGIAHTHCAEAWFKLKGNRNHLLYPRPSTLK

Homology

[Close]

BLAST of Sed0002973.3 vs. NCBI nr
Match: XP_038883622.1 (uncharacterized protein LOC120074540 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 5.5e-46
Identity = 119/211 (56.40%), Postives = 137/211 (64.93%), Query Frame = 0


Query: 1   MDEEERNRQEG---VL--FETGLPKSTVDLVNEDKIEASVVIIP---------------- 60
           MD EERNR++G   VL   ETG PK T+DLVN D+IEA++V+IP                
Sbjct: 1   MDREERNRRDGGGDVLSRIETGEPKLTIDLVNGDRIEATIVVIPESAASAGGDKEAHGGA 60

Query: 61  ---------EAISNVNPETREDS--NPLETVVVIDSD--------EESVAKNSGMGLRKD 120
                    EA  NVN ETRE S  NP ETV+VIDSD        EES+ KN+ MGLRKD
Sbjct: 61  TGTSFGFSGEASPNVNRETREGSNLNPSETVLVIDSDGAASGGENEESLVKNNEMGLRKD 120

Query: 121 MEKMDVKSK--------MLANVKPKGCKGFMEELNGERVCRICHLGSNQA---------S 155
           +EKM+VKSK        ML NVKPKG KGF+++ NGE+VCRICHL SNQA         S
Sbjct: 121 LEKMNVKSKMSEAKDNPMLINVKPKGGKGFIDDWNGEKVCRICHLASNQASEAKTGTSTS 180

[Close]

BLAST of Sed0002973.3 vs. NCBI nr
Match: XP_011658254.1 (uncharacterized protein LOC105435966 isoform X1 [Cucumis sativus] >KGN49315.1 hypothetical protein Csa_004161 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-45
Identity = 117/202 (57.92%), Postives = 132/202 (65.35%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETAVPKPTNDLVNGDRIEATIVIIPESLASAGGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN ETRE S  NP ETV+VIDS        D ES+ KN+GMGL KD+EK++VKSK
Sbjct: 61  EAIPNVNIETREGSNLNPSETVLVIDSDGAASRGEDGESLVKNNGMGLGKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQ---------ASELVQLGCDC 155
                   ML NVKPKG KGF+++ NGERVCRICHL SNQ          SEL+QLGCDC
Sbjct: 121 MSEAKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQTSEAKTGTSTSELIQLGCDC 180

[Close]

BLAST of Sed0002973.3 vs. NCBI nr
Match: XP_008439727.1 (PREDICTED: uncharacterized protein LOC103484442 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-45
Identity = 118/202 (58.42%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETVVPKPTNDLVNGDRIEATIVIIPESAASACGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN +TRE S  NP ETV+VIDS        D ES+ KNS MGLRKD+EK++VKSK
Sbjct: 61  EAIPNVNIDTREGSNLNPSETVLVIDSDGAASRGEDGESLMKNSEMGLRKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDC 155
                   ML NVKPKG KGF+++ NGERVCRICHL SNQA         SEL+QLGCDC
Sbjct: 121 MSETKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQASEAKTGTSTSELIQLGCDC 180

[Close]

BLAST of Sed0002973.3 vs. NCBI nr
Match: XP_031744000.1 (uncharacterized protein LOC105435966 isoform X2 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 4.7e-45
Identity = 116/201 (57.71%), Postives = 131/201 (65.17%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETAVPKPTNDLVNGDRIEATIVIIPESLASAGGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN ETRE S  NP ETV+VIDS        D ES+ KN+GMGL KD+EK++VKSK
Sbjct: 61  EAIPNVNIETREGSNLNPSETVLVIDSDGAASRGEDGESLVKNNGMGLGKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQ---------ASELVQLGCDC 154
                   ML NVKPKG KGF+++ NGERVCRICHL SNQ          SEL+QLGCDC
Sbjct: 121 MSEAKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQTSEAKTGTSTSELIQLGCDC 180

[Close]

BLAST of Sed0002973.3 vs. NCBI nr
Match: XP_023518695.1 (uncharacterized protein LOC111782129 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 7.5e-43
Identity = 111/194 (57.22%), Postives = 128/194 (65.98%), Query Frame = 0


Query: 1   MDEEERNRQEGVLF----ETGLPKSTVDLVNEDKIEASVVIIPEAISNV---------NP 60
           MD EERNRQEG +     ETG+PK+T DLV+ DKIE+++VIIPE  +             
Sbjct: 1   MDREERNRQEGGVISSRVETGVPKTTNDLVSSDKIESTIVIIPETTAPTGGDKDAHAPGG 60

Query: 61  ETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSKM------- 120
           ETRE S  NPLET+VVIDS        D ESV KN GM   KD+EKM++KSKM       
Sbjct: 61  ETREGSNLNPLETIVVIDSGGAASGGGDGESVVKNKGMVSGKDLEKMNLKSKMSEAKENP 120

Query: 121 -LANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDCKHELGIAH 155
            L NVKP   +GF+E+ NGERVCRICHL SNQA         SEL+QLGC CK ELGI+H
Sbjct: 121 ALVNVKPIEGRGFVEDWNGERVCRICHLASNQASEPKTGTSTSELIQLGCGCKDELGISH 180

[Close]

BLAST of Sed0002973.3 vs. ExPASy TrEMBL
Match: A0A0A0KHW6 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519670 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.0e-46
Identity = 117/202 (57.92%), Postives = 132/202 (65.35%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETAVPKPTNDLVNGDRIEATIVIIPESLASAGGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN ETRE S  NP ETV+VIDS        D ES+ KN+GMGL KD+EK++VKSK
Sbjct: 61  EAIPNVNIETREGSNLNPSETVLVIDSDGAASRGEDGESLVKNNGMGLGKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQ---------ASELVQLGCDC 155
                   ML NVKPKG KGF+++ NGERVCRICHL SNQ          SEL+QLGCDC
Sbjct: 121 MSEAKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQTSEAKTGTSTSELIQLGCDC 180

[Close]

BLAST of Sed0002973.3 vs. ExPASy TrEMBL
Match: A0A1S3B025 (uncharacterized protein LOC103484442 OS=Cucumis melo OX=3656 GN=LOC103484442 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.8e-46
Identity = 118/202 (58.42%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETVVPKPTNDLVNGDRIEATIVIIPESAASACGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN +TRE S  NP ETV+VIDS        D ES+ KNS MGLRKD+EK++VKSK
Sbjct: 61  EAIPNVNIDTREGSNLNPSETVLVIDSDGAASRGEDGESLMKNSEMGLRKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDC 155
                   ML NVKPKG KGF+++ NGERVCRICHL SNQA         SEL+QLGCDC
Sbjct: 121 MSETKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQASEAKTGTSTSELIQLGCDC 180

[Close]

BLAST of Sed0002973.3 vs. ExPASy TrEMBL
Match: A0A6J1KTX6 (uncharacterized protein LOC111497182 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497182 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.0e-43
Identity = 110/194 (56.70%), Postives = 127/194 (65.46%), Query Frame = 0


Query: 1   MDEEERNRQEGVL----FETGLPKSTVDLVNEDKIEASVVIIPEAISNV---------NP 60
           MD EERNRQEG +     ETG+PK+T DLV+ DKIE+++VIIPE  +             
Sbjct: 1   MDREERNRQEGGVISSRIETGVPKTTNDLVSSDKIESTIVIIPETTAPTGGDKDAHAPGR 60

Query: 61  ETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSKM------- 120
           ETRE S  NPLE +VVIDS        D ESV KN GM   KD+EKM++KSKM       
Sbjct: 61  ETREGSNLNPLEIIVVIDSGGAASGGGDGESVVKNKGMASGKDLEKMNLKSKMSEAKENP 120

Query: 121 -LANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDCKHELGIAH 155
            L NVKP   +GF+E+ NGERVCRICHL SNQA         SEL+QLGC CK ELGI+H
Sbjct: 121 ALVNVKPIEGRGFVEDWNGERVCRICHLASNQASEPKTGTSTSELIQLGCGCKDELGISH 180

[Close]

BLAST of Sed0002973.3 vs. ExPASy TrEMBL
Match: A0A6J1KX84 (uncharacterized protein LOC111497182 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497182 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.0e-43
Identity = 110/194 (56.70%), Postives = 127/194 (65.46%), Query Frame = 0


Query: 1   MDEEERNRQEGVL----FETGLPKSTVDLVNEDKIEASVVIIPEAISNV---------NP 60
           MD EERNRQEG +     ETG+PK+T DLV+ DKIE+++VIIPE  +             
Sbjct: 1   MDREERNRQEGGVISSRIETGVPKTTNDLVSSDKIESTIVIIPETTAPTGGDKDAHAPGR 60

Query: 61  ETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSKM------- 120
           ETRE S  NPLE +VVIDS        D ESV KN GM   KD+EKM++KSKM       
Sbjct: 61  ETREGSNLNPLEIIVVIDSGGAASGGGDGESVVKNKGMASGKDLEKMNLKSKMSEAKENP 120

Query: 121 -LANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDCKHELGIAH 155
            L NVKP   +GF+E+ NGERVCRICHL SNQA         SEL+QLGC CK ELGI+H
Sbjct: 121 ALVNVKPIEGRGFVEDWNGERVCRICHLASNQASEPKTGTSTSELIQLGCGCKDELGISH 180

[Close]

BLAST of Sed0002973.3 vs. ExPASy TrEMBL
Match: A0A6J1ELN1 (uncharacterized protein LOC111433701 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433701 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 109/194 (56.19%), Postives = 127/194 (65.46%), Query Frame = 0


Query: 1   MDEEERNRQEGVLF----ETGLPKSTVDLVNEDKIEASVVIIPEAISNV---------NP 60
           MD EER+RQEG +     ETG+PK+T DLV+ DKIE+++VIIPE  +             
Sbjct: 1   MDREERSRQEGGVISSRVETGVPKTTNDLVSSDKIESTIVIIPETTAPTGGDKDAHAPGR 60

Query: 61  ETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSKM------- 120
           ETRE S  N LETVVVID+        D ESV KN GM   KD+EKM++KSKM       
Sbjct: 61  ETRESSNLNTLETVVVIDTGGAASGGGDGESVVKNKGMVSGKDLEKMNLKSKMSEAKENP 120

Query: 121 -LANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDCKHELGIAH 155
            L NVKP   +GF+E+ NGERVCRICHL SNQA         SEL+QLGC CK ELGI+H
Sbjct: 121 ALVNVKPIEGRGFVEDWNGERVCRICHLASNQASEPKTGTSTSELIQLGCGCKDELGISH 180

[Close]

BLAST of Sed0002973.3 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 108 GERVCRICHLGSNQ-----------ASELVQLGCDCKHELGIAHTHCAEAWFKLKGN 154
           GER+CRICH GS+Q           + EL+++GC CK+ELG+AH HCAEAWFKL+GN
Sbjct: 98  GERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGN 154

[Close]

BLAST of Sed0002973.3 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-10
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 109 ERVCRICHLG-SNQASELVQLGCDCKHELGIAHTHCAEAWFKLKGNR 155
           E+ CRICHLG        ++LGC CK +L +AH  CAE WFK+KG++
Sbjct: 81  EKDCRICHLGVETSGGGAIELGCSCKDDLAVAHRQCAETWFKIKGDK 127

[Close]

BLAST of Sed0002973.3 vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 109 ERVCRICHLG----SNQASELVQLGCDCKHELGIAHTHCAEAWFKLKGNR 155
           E+ CRICHLG     ++  + + LGC CK +LG  H  CA+ WFK+KGN+
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNK 124

[Close]

BLAST of Sed0002973.3 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 38/111 (34.23%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 48  ETREDSNPLETVVVIDSDEESVAKNSGMGLRKDMEKMDVKSKMLANVKPKGCKGFMEELN 107
           E R  S  +E    I  DEE  +  S   +  D+E + +  K+            +    
Sbjct: 28  EPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLE-LGLPEKV------------VHLSQ 87

Query: 108 GERVCRICHLGSNQAS----ELVQLGCDCKHELGIAHTHCAEAWFKLKGNR 155
            ER CRICH+  + A+      ++LGC CK +L  AH HCAE WFK+KGN+
Sbjct: 88  SERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNK 125

[Close]

BLAST of Sed0002973.3 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 109 ERVCRICHLG----SNQASELVQLGCDCKHELGIAHTHCAEAWFKLKGNR 155
           E+ CRICHLG     ++  + + LGC CK +LG  H  CA+ WFK+KGN+
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNK 124

The following BLAST results are available for this feature:

BLAST of Sed0002973.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883622.1	5.5e-46	56.40	uncharacterized protein LOC120074540 [Benincasa hispida]	[more]
XP_011658254.1	1.2e-45	57.92	uncharacterized protein LOC105435966 isoform X1 [Cucumis sativus] >KGN49315.1 hy...	[more]
XP_008439727.1	1.6e-45	58.42	PREDICTED: uncharacterized protein LOC103484442 [Cucumis melo]	[more]
XP_031744000.1	4.7e-45	57.71	uncharacterized protein LOC105435966 isoform X2 [Cucumis sativus]	[more]
XP_023518695.1	7.5e-43	57.22	uncharacterized protein LOC111782129 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0002973.3 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002973.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHW6	6.0e-46	57.92	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51967...	[more]
A0A1S3B025	7.8e-46	58.42	uncharacterized protein LOC103484442 OS=Cucumis melo OX=3656 GN=LOC103484442 PE=...	[more]
A0A6J1KTX6	8.0e-43	56.70	uncharacterized protein LOC111497182 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KX84	8.0e-43	56.70	uncharacterized protein LOC111497182 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ELN1	1.5e-41	56.19	uncharacterized protein LOC111433701 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0002973.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34200.1	3.1e-15	57.89	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	3.0e-10	51.06	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	1.2e-09	48.00	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	1.2e-09	34.23	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.2e-09	48.00	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 111..155 e-value: 1.0E-5 score: 32.9
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 112..153 e-value: 1.0E-6 score: 28.7
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 104..166 score: 13.568686
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 96..158 e-value: 1.4E-11 score: 45.8
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 44..154
None	No IPR available	PANTHER	PTHR46214:SF8	OS01G0731800 PROTEIN	coord: 44..154
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 109..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0002973	Sed0002973	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002973.3-three_prime_utr	Sed0002973.3-three_prime_utr-LG10:1296090..1297738	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002973.3-exon	Sed0002973.3-exon-LG10:1296090..1297778	exon
Sed0002973.3-exon	Sed0002973.3-exon-LG10:1297876..1298642	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002973.3-cds	Sed0002973.3-cds-LG10:1297739..1297778	CDS
Sed0002973.3-cds	Sed0002973.3-cds-LG10:1297876..1298336	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002973.3-five_prime_utr	Sed0002973.3-five_prime_utr-LG10:1298337..1298642	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0002973.3	Sed0002973.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding