Sed0002973 (gene) Chayote v1

Overview


Name	Sed0002973
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-CH-type domain-containing protein
Location	LG10: 1296090 .. 1298642 (-)
RNA-Seq Expression	Sed0002973
Synteny	Sed0002973

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAATCACATCCAATTGGAGACGACCCAGAAGCCAAATCTTCTTCATTTATTGTTTTTATTCTTCAATTTACCAAGTAAACGCTTCCCACTGAAGAAAAAAATTTGGGTTTCCAAATAAAAAAGCTCTCCCCAGCAACAAAGCATTGATATCTTCCATTGGCGAAAAGAAAAGTTGTAAGCAAATGATGCTTCTTTATTTAAAGTGAATACTTGGGGTTTTTAGATGGAACCATGTTTCTCCCTTTTCGTTATTAGTTTTGTTAGTTGAAAAACTGAGTTTTGGGAAATTTTGTTTTCGATTCATGGATGAAGAAGAAAGAAATCGCCAAGAAGGTGTATTGTTTGAAACAGGGCTGCCTAAATCCACTGTTGATTTGGTTAACGAGGATAAGATCGAGGCCAGCGTTGTGATAATCCCAGAAGCTATATCAAATGTTAATCCAGAAACAAGAGAGGATTCAAACCCTTTGGAAACTGTGGTGGTTATTGATTCAGACGAAGAATCGGTTGCGAAGAACAGTGGAATGGGGCTGAGAAAGGATATGGAAAAGATGGATGTGAAGTCAAAGATGTTGGCAAATGTAAAGCCAAAAGGGTGTAAAGGGTTTATGGAAGAGTTGAATGGAGAAAGGGTATGTAGGATCTGCCACTTGGGTTCCAACCAAGCTTCAGAGTTGGTTCAACTTGGTTGTGACTGTAAACATGAGCTTGGAATTGCTCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGGTTGGTTTAAAATGAAGTTTTTGTGCCTTTTTGTTTTGCTGGTATCTTAGGATTTGGTATTGACATTTGATGAAGTTTTGTGATTTTGAATTGTTAGGAACCACCTACTCTACCCGAGACCCTCCACATTGAAGTGATATTGTCCACTTTGGGCATAACCCTCATGGCTTTGTTTTTGGGCATCTCCCAAAAGGGGCTCATACCAATGGAGGCTCTGGTCATCCCATTTATACCCATGAACTTTCCCCTCTCTTTCCCATGTGGGACAATTGGTTGCAATACCAACATGAATGTATATCTTTGTTCTCTTGTTGTAACTTGTAGCTGCTAATCCTACCATTAGTCCCCAAACCTGGGTTTCTAAGGTGTATTCCCCTCAAAATTCCACTGTGACATTAATTTGTAAGCCTCCCGTGTCTTCATTTCTTCTATGTTTCTCGGTGCTTGGCCTAGGGATAGGCGTGGTTACCTCGTAATTCCCAGTTTCCAAAAGACAAAATCCGGCAATTAACCAAAACTTTTATCTTCCCTCATTTGTTTCAGAAAATAGTTTTTTTTTTTACACTTTTTGCCTATCGAAGGATTGCCCAATTGAGTTTTAGTAACCTGTTAAAATAGATGAAAAGCCCTTCTATTTCTGTAGATTGAGGAGAATAAGCTACAAAAAGGAAAATAAAGCCAACTTACTAATATGGGGAGAAATGTTTCAGGTTGCATCCATTCTTTTATTTGTTTCTGTTATCTAGAAGACATGAGCCATTACACAATCAATAGAATGAAGCAGTGACATAAAAATGTAGTTATGTAAAGGGGCTAAAATATGGTTCTATGATATTATGAAAGGGGGTATGGAAGGTTTATTTTTCTGCCTTTTCCAATGGGAGGTTTTTAGTTCGGTGGTTTGTAACTTTGTAGTCGCCTCAACGAATCTTAACAGGTTTTATTTTCCGGGTAGTAACTACGGTCTACGCATATTAAGTTTTTTGGTTCAAACTTACAGACTTCCATTTTCCTGGTGTAGAGAGTGATAGTTGGTGTCTGATTATGTTTATACAACTCGATGATAGATCATAAATGTAAAGATAAGTTTCTGTTTCTTTTGGTAATTCAGTTACAAACTGCCAAATGGATTTTTGAAGTATAGCTCTCTTATGTTGAGACTATATGCTTTCGATGAAGTCGAAATGCTGCAGAAGAGATCGAGTATTGAACGGTTTCACATTGATCAAGTCAAATGTTTTTTGTATACATTTGTATCAGTATGTGATAAGTATAAAGAAAAGAGCTCAAAACCACTGCATGTCATTTGGCAACTCCTGGAGATTTAATTTCAAACTACAATTTTCTTTTCATTTTGTCAAATGACTATCGATTATATGATCATAATCATCTAGTCTTTTTCCTTAATACAGAATGTGCGAAATTTGCGGCGAGATTGCTAAGAACGTTGAAGGAGTCGGGGACAGTAGATTTATGGAAGAGTGGAACGAGGGAAGGTCGGTAGATAGCAATGGAAACATATCAAGCAGAGGCTGGGGATGTTGGAGAGGACAGCCATTCTGTAACTTCTTGATGGCATGTTTGGTAATAGCCTTTGTTCTTCCATGGTTTCTTCGCGTAAACATTTTCTAGCAAGTGTCGAATAATTGAAAGAGGGCCTTGGAGTGCTTAATGGCCACCTATCTAAGAATTAATTTTCTACGAGATTCCTTGACATCCAAATGTGGTAGGGTCAGACGGTATATCTCGTGACATTAGTCGAGGTGCGCACAAGTACAATCACGGA

mRNA sequence

ATTTTAATCACATCCAATTGGAGACGACCCAGAAGCCAAATCTTCTTCATTTATTGTTTTTATTCTTCAATTTACCAAGTAAACGCTTCCCACTGAAGAAAAAAATTTGGGTTTCCAAATAAAAAAGCTCTCCCCAGCAACAAAGCATTGATATCTTCCATTGGCGAAAAGAAAAGTTGTAAGCAAATGATGCTTCTTTATTTAAAGTGAATACTTGGGGTTTTTAGATGGAACCATGTTTCTCCCTTTTCGTTATTAGTTTTGTTAGTTGAAAAACTGAGTTTTGGGAAATTTTGTTTTCGATTCATGGATGAAGAAGAAAGAAATCGCCAAGAAGGTGTATTGTTTGAAACAGGGCTGCCTAAATCCACTGTTGATTTGGTTAACGAGGATAAGATCGAGGCCAGCGTTGTGATAATCCCAGAAGCTATATCAAATGTTAATCCAGAAACAAGAGAGGATTCAAACCCTTTGGAAACTGTGGTGGTTATTGATTCAGACGAAGAATCGGTTGCGAAGAACAGTGGAATGGGGCTGAGAAAGGATATGGAAAAGATGGATGTGAAGTCAAAGATGTTGGCAAATGTAAAGCCAAAAGGGTGTAAAGGGTTTATGGAAGAGTTGAATGGAGAAAGGGTATGTAGGATCTGCCACTTGGGTTCCAACCAAGCTTCAGAGTTGGTTCAACTTGGTTGTGACTGTAAACATGAGCTTGGAATTGCTCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGAATGTGCGAAATTTGCGGCGAGATTGCTAAGAACGTTGAAGGAGTCGGGGACAGTAGATTTATGGAAGAGTGGAACGAGGGAAGGTCGGTAGATAGCAATGGAAACATATCAAGCAGAGGCTGGGGATGTTGGAGAGGACAGCCATTCTGTAACTTCTTGATGGCATGTTTGGTAATAGCCTTTGTTCTTCCATGGTTTCTTCGCGTAAACATTTTCTAGCAAGTGTCGAATAATTGAAAGAGGGCCTTGGAGTGCTTAATGGCCACCTATCTAAGAATTAATTTTCTACGAGATTCCTTGACATCCAAATGTGGTAGGGTCAGACGGTATATCTCGTGACATTAGTCGAGGTGCGCACAAGTACAATCACGGA

Coding sequence (CDS)

ATGGATGAAGAAGAAAGAAATCGCCAAGAAGGTGTATTGTTTGAAACAGGGCTGCCTAAATCCACTGTTGATTTGGTTAACGAGGATAAGATCGAGGCCAGCGTTGTGATAATCCCAGAAGCTATATCAAATGTTAATCCAGAAACAAGAGAGGATTCAAACCCTTTGGAAACTGTGGTGGTTATTGATTCAGACGAAGAATCGGTTGCGAAGAACAGTGGAATGGGGCTGAGAAAGGATATGGAAAAGATGGATGTGAAGTCAAAGATGTTGGCAAATGTAAAGCCAAAAGGGTGTAAAGGGTTTATGGAAGAGTTGAATGGAGAAAGGGTATGTAGGATCTGCCACTTGGGTTCCAACCAAGCTTCAGAGTTGGTTCAACTTGGTTGTGACTGTAAACATGAGCTTGGAATTGCTCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGAATGTGCGAAATTTGCGGCGAGATTGCTAAGAACGTTGAAGGAGTCGGGGACAGTAGATTTATGGAAGAGTGGAACGAGGGAAGGTCGGTAGATAGCAATGGAAACATATCAAGCAGAGGCTGGGGATGTTGGAGAGGACAGCCATTCTGTAACTTCTTGATGGCATGTTTGGTAATAGCCTTTGTTCTTCCATGGTTTCTTCGCGTAAACATTTTCTAG

Protein sequence

MDEEERNRQEGVLFETGLPKSTVDLVNEDKIEASVVIIPEAISNVNPETREDSNPLETVVVIDSDEESVAKNSGMGLRKDMEKMDVKSKMLANVKPKGCKGFMEELNGERVCRICHLGSNQASELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFVLPWFLRVNIF

Homology

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BLAST of Sed0002973 vs. NCBI nr
Match: XP_038883622.1 (uncharacterized protein LOC120074540 [Benincasa hispida])

HSP 1 Score: 335.9 bits (860), Expect = 2.7e-88
Identity = 184/283 (65.02%), Postives = 205/283 (72.44%), Query Frame = 0


Query: 1   MDEEERNRQEG---VL--FETGLPKSTVDLVNEDKIEASVVIIP---------------- 60
           MD EERNR++G   VL   ETG PK T+DLVN D+IEA++V+IP                
Sbjct: 1   MDREERNRRDGGGDVLSRIETGEPKLTIDLVNGDRIEATIVVIPESAASAGGDKEAHGGA 60

Query: 61  ---------EAISNVNPETREDS--NPLETVVVIDSD--------EESVAKNSGMGLRKD 120
                    EA  NVN ETRE S  NP ETV+VIDSD        EES+ KN+ MGLRKD
Sbjct: 61  TGTSFGFSGEASPNVNRETREGSNLNPSETVLVIDSDGAASGGENEESLVKNNEMGLRKD 120

Query: 121 MEKMDVKSK--------MLANVKPKGCKGFMEELNGERVCRICHLGSNQA---------S 180
           +EKM+VKSK        ML NVKPKG KGF+++ NGE+VCRICHL SNQA         S
Sbjct: 121 LEKMNVKSKMSEAKDNPMLINVKPKGGKGFIDDWNGEKVCRICHLASNQASEAKTGTSTS 180

Query: 181 ELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRS 227
           EL+QLGCDCK ELGIAH+HCAEAWFKLKGNRMCEICGE AKNVEGVGD+RFMEEWNEGRS
Sbjct: 181 ELIQLGCDCKDELGIAHSHCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRS 240

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BLAST of Sed0002973 vs. NCBI nr
Match: XP_008439727.1 (PREDICTED: uncharacterized protein LOC103484442 [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 7.9e-88
Identity = 183/274 (66.79%), Postives = 201/274 (73.36%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETVVPKPTNDLVNGDRIEATIVIIPESAASACGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN +TRE S  NP ETV+VIDS        D ES+ KNS MGLRKD+EK++VKSK
Sbjct: 61  EAIPNVNIDTREGSNLNPSETVLVIDSDGAASRGEDGESLMKNSEMGLRKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDC 180
                   ML NVKPKG KGF+++ NGERVCRICHL SNQA         SEL+QLGCDC
Sbjct: 121 MSETKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQASEAKTGTSTSELIQLGCDC 180

Query: 181 KHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRSVDSNGNISS 227
           K ELGIAH HCAEAWFKLKGNRMCEICGE AKNVEGVGD+RFMEEWNEGRSVDSNGN S+
Sbjct: 181 KDELGIAHGHCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNTSN 240

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BLAST of Sed0002973 vs. NCBI nr
Match: XP_011658254.1 (uncharacterized protein LOC105435966 isoform X1 [Cucumis sativus] >KGN49315.1 hypothetical protein Csa_004161 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-86
Identity = 180/274 (65.69%), Postives = 199/274 (72.63%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETAVPKPTNDLVNGDRIEATIVIIPESLASAGGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN ETRE S  NP ETV+VIDS        D ES+ KN+GMGL KD+EK++VKSK
Sbjct: 61  EAIPNVNIETREGSNLNPSETVLVIDSDGAASRGEDGESLVKNNGMGLGKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQ---------ASELVQLGCDC 180
                   ML NVKPKG KGF+++ NGERVCRICHL SNQ          SEL+QLGCDC
Sbjct: 121 MSEAKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQTSEAKTGTSTSELIQLGCDC 180

Query: 181 KHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRSVDSNGNISS 227
           K ELGIAH HCAEAWFKLKGNRMCEICGE AKNVEGVGD+RFMEEWNEGRSVDS+GN S+
Sbjct: 181 KDELGIAHGHCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSSGNTSN 240

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BLAST of Sed0002973 vs. NCBI nr
Match: XP_022926134.1 (uncharacterized protein LOC111433334 [Cucurbita moschata] >XP_022926135.1 uncharacterized protein LOC111433334 [Cucurbita moschata])

HSP 1 Score: 316.2 bits (809), Expect = 2.2e-82
Identity = 168/244 (68.85%), Postives = 184/244 (75.41%), Query Frame = 0


Query: 15  ETGLPKSTVDLVNEDKIEASVVIIPEAISN---------VNPETREDS--NPLETVVVID 74
           ET  PK  VDLVN D+IEA++V+IPE  ++         VN ETRE S  NP ETVVVID
Sbjct: 5   ETEGPKPIVDLVNSDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETVVVID 64

Query: 75  SDE--------ESVAKNSGMGLRKDMEKMDVKSK----MLANVKPKGCKGFMEELNGERV 134
           SD         ES+ K +GMGLRKD EK +VKS     +L NV+ KG KGF EE NGERV
Sbjct: 65  SDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWNGERV 124

Query: 135 CRICHLGSNQA---------SELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEI 194
           CRICHL S+QA         SEL+QLGCDCK ELGI HTHCAEAWFKLKGNRMCEICGE 
Sbjct: 125 CRICHLASDQASGAKTGTSTSELIQLGCDCKDELGITHTHCAEAWFKLKGNRMCEICGET 184

Query: 195 AKNVEGVGDSRFMEEWNEGRSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFVLPWFLR 227
           AKNVEGVGD+RFMEEWNEGRSVDSNGNIS+RG  CWRGQPFCNFLMACLVIAFVLPWF R
Sbjct: 185 AKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLPWFFR 244

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BLAST of Sed0002973 vs. NCBI nr
Match: KAG7034652.1 (hypothetical protein SDJN02_04382, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.8 bits (808), Expect = 2.9e-82
Identity = 168/244 (68.85%), Postives = 185/244 (75.82%), Query Frame = 0


Query: 15  ETGLPKSTVDLVNEDKIEASVVIIPEAISN---------VNPETREDS--NPLETVVVID 74
           ET  PK  VDLVN D+IEA++V+IPE  ++         VN ETRE S  NP ETVVVID
Sbjct: 5   ETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETVVVID 64

Query: 75  SDE--------ESVAKNSGMGLRKDMEKMDVKSK----MLANVKPKGCKGFMEELNGERV 134
           SD         ES+ K +GMGLRKD EK +VKS     +L NV+ KG KGF EE NGERV
Sbjct: 65  SDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWNGERV 124

Query: 135 CRICHLGSNQA---------SELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEI 194
           CRICHL S+QA         SEL+QLGCDCK ELGI+HTHCAEAWFKLKGNRMCEICGE 
Sbjct: 125 CRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEICGET 184

Query: 195 AKNVEGVGDSRFMEEWNEGRSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFVLPWFLR 227
           AKNVEGVGD+RFMEEWNEGRSVDSNGNIS+RG  CWRGQPFCNFLMACLVIAFVLPWF R
Sbjct: 185 AKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLPWFFR 244

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BLAST of Sed0002973 vs. ExPASy TrEMBL
Match: A0A1S3B025 (uncharacterized protein LOC103484442 OS=Cucumis melo OX=3656 GN=LOC103484442 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.8e-88
Identity = 183/274 (66.79%), Postives = 201/274 (73.36%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETVVPKPTNDLVNGDRIEATIVIIPESAASACGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN +TRE S  NP ETV+VIDS        D ES+ KNS MGLRKD+EK++VKSK
Sbjct: 61  EAIPNVNIDTREGSNLNPSETVLVIDSDGAASRGEDGESLMKNSEMGLRKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDC 180
                   ML NVKPKG KGF+++ NGERVCRICHL SNQA         SEL+QLGCDC
Sbjct: 121 MSETKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQASEAKTGTSTSELIQLGCDC 180

Query: 181 KHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRSVDSNGNISS 227
           K ELGIAH HCAEAWFKLKGNRMCEICGE AKNVEGVGD+RFMEEWNEGRSVDSNGN S+
Sbjct: 181 KDELGIAHGHCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNTSN 240

[Close]

BLAST of Sed0002973 vs. ExPASy TrEMBL
Match: A0A0A0KHW6 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519670 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.2e-87
Identity = 180/274 (65.69%), Postives = 199/274 (72.63%), Query Frame = 0


Query: 1   MDEEERNRQEG----VLFETGLPKSTVDLVNEDKIEASVVIIP----------------- 60
           MD EERNRQ+G       ET +PK T DLVN D+IEA++VIIP                 
Sbjct: 1   MDREERNRQDGGDVSSRVETAVPKPTNDLVNGDRIEATIVIIPESLASAGGDKEAHGFGG 60

Query: 61  EAISNVNPETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSK 120
           EAI NVN ETRE S  NP ETV+VIDS        D ES+ KN+GMGL KD+EK++VKSK
Sbjct: 61  EAIPNVNIETREGSNLNPSETVLVIDSDGAASRGEDGESLVKNNGMGLGKDLEKLNVKSK 120

Query: 121 --------MLANVKPKGCKGFMEELNGERVCRICHLGSNQ---------ASELVQLGCDC 180
                   ML NVKPKG KGF+++ NGERVCRICHL SNQ          SEL+QLGCDC
Sbjct: 121 MSEAKDNPMLINVKPKGGKGFIDDWNGERVCRICHLASNQTSEAKTGTSTSELIQLGCDC 180

Query: 181 KHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRSVDSNGNISS 227
           K ELGIAH HCAEAWFKLKGNRMCEICGE AKNVEGVGD+RFMEEWNEGRSVDS+GN S+
Sbjct: 181 KDELGIAHGHCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSSGNTSN 240

[Close]

BLAST of Sed0002973 vs. ExPASy TrEMBL
Match: A0A6J1EK57 (uncharacterized protein LOC111433334 OS=Cucurbita moschata OX=3662 GN=LOC111433334 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.1e-82
Identity = 168/244 (68.85%), Postives = 184/244 (75.41%), Query Frame = 0


Query: 15  ETGLPKSTVDLVNEDKIEASVVIIPEAISN---------VNPETREDS--NPLETVVVID 74
           ET  PK  VDLVN D+IEA++V+IPE  ++         VN ETRE S  NP ETVVVID
Sbjct: 5   ETEGPKPIVDLVNSDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETVVVID 64

Query: 75  SDE--------ESVAKNSGMGLRKDMEKMDVKSK----MLANVKPKGCKGFMEELNGERV 134
           SD         ES+ K +GMGLRKD EK +VKS     +L NV+ KG KGF EE NGERV
Sbjct: 65  SDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWNGERV 124

Query: 135 CRICHLGSNQA---------SELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEI 194
           CRICHL S+QA         SEL+QLGCDCK ELGI HTHCAEAWFKLKGNRMCEICGE 
Sbjct: 125 CRICHLASDQASGAKTGTSTSELIQLGCDCKDELGITHTHCAEAWFKLKGNRMCEICGET 184

Query: 195 AKNVEGVGDSRFMEEWNEGRSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFVLPWFLR 227
           AKNVEGVGD+RFMEEWNEGRSVDSNGNIS+RG  CWRGQPFCNFLMACLVIAFVLPWF R
Sbjct: 185 AKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLPWFFR 244

[Close]

BLAST of Sed0002973 vs. ExPASy TrEMBL
Match: A0A6J1INW7 (uncharacterized protein LOC111478615 OS=Cucurbita maxima OX=3661 GN=LOC111478615 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 5.9e-81
Identity = 166/244 (68.03%), Postives = 183/244 (75.00%), Query Frame = 0


Query: 15  ETGLPKSTVDLVNEDKIEASVVIIPEAISN---------VNPETREDS--NPLETVVVID 74
           ET  PK  VDLV+ D+IEA++V+IPE  ++         VN ETRE S  NP ETVVVID
Sbjct: 5   ETEGPKPIVDLVSGDRIEATIVVIPEGAASAGGTPATELVNRETREGSNMNPSETVVVID 64

Query: 75  SDE--------ESVAKNSGMGLRKDMEKMDVKSK----MLANVKPKGCKGFMEELNGERV 134
           SD         ES+ K +GMG RKD EK +VKS     +L NV+ KG K F EE NGERV
Sbjct: 65  SDRTACGVEDGESIEKKNGMGFRKDFEKRNVKSNKENPVLINVRQKGGKRFNEEWNGERV 124

Query: 135 CRICHLGSNQA---------SELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEI 194
           CRICHL S+QA         SEL+QLGCDCK ELGIAHTHCAEAWFKLKGNRMCEICGE 
Sbjct: 125 CRICHLASDQASEPKTGISTSELIQLGCDCKDELGIAHTHCAEAWFKLKGNRMCEICGET 184

Query: 195 AKNVEGVGDSRFMEEWNEGRSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFVLPWFLR 227
           AKNVEGVGD+RFMEEWNEGRSVDSNGNIS+RG  CWRGQPFCNFLMACLVIAFVLPWF R
Sbjct: 185 AKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLPWFFR 244

[Close]

BLAST of Sed0002973 vs. ExPASy TrEMBL
Match: A0A6J1KX84 (uncharacterized protein LOC111497182 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497182 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 5.9e-81
Identity = 170/266 (63.91%), Postives = 191/266 (71.80%), Query Frame = 0


Query: 1   MDEEERNRQEGVL----FETGLPKSTVDLVNEDKIEASVVIIPEAISNV---------NP 60
           MD EERNRQEG +     ETG+PK+T DLV+ DKIE+++VIIPE  +             
Sbjct: 1   MDREERNRQEGGVISSRIETGVPKTTNDLVSSDKIESTIVIIPETTAPTGGDKDAHAPGR 60

Query: 61  ETREDS--NPLETVVVIDS--------DEESVAKNSGMGLRKDMEKMDVKSKM------- 120
           ETRE S  NPLE +VVIDS        D ESV KN GM   KD+EKM++KSKM       
Sbjct: 61  ETREGSNLNPLEIIVVIDSGGAASGGGDGESVVKNKGMASGKDLEKMNLKSKMSEAKENP 120

Query: 121 -LANVKPKGCKGFMEELNGERVCRICHLGSNQA---------SELVQLGCDCKHELGIAH 180
            L NVKP   +GF+E+ NGERVCRICHL SNQA         SEL+QLGC CK ELGI+H
Sbjct: 121 ALVNVKPIEGRGFVEDWNGERVCRICHLASNQASEPKTGTSTSELIQLGCGCKDELGISH 180

Query: 181 THCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRSVDSNGNISSRGWGCWRG 227
           THCAEAWFKLKGNR CEICGEIAKN+EGV D+ FMEEWNEGRSVDS GN S+RG G WRG
Sbjct: 181 THCAEAWFKLKGNRTCEICGEIAKNIEGVVDNSFMEEWNEGRSVDSYGNTSNRGGGWWRG 240

[Close]

BLAST of Sed0002973 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 6.0e-25
Identity = 67/187 (35.83%), Postives = 94/187 (50.27%), Query Frame = 0


Query: 48  ETREDSNPLETVVVIDSDEESVAKNSGMGLRKDMEKMDVKSKMLANVKPKGCKGFMEELN 107
           E R  S  +E    I  DEE  +  S   +  D+E + +  K+            +    
Sbjct: 28  EPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLE-LGLPEKV------------VHLSQ 87

Query: 108 GERVCRICHLGSNQAS----ELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEIA 167
            ER CRICH+  + A+      ++LGC CK +L  AH HCAE WFK+KGN++CE+CG IA
Sbjct: 88  SERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIA 147

Query: 168 KNVEGVGDSRFMEEWNEGRSVD-----SNGNISSRGWGCWRGQPFCNFLMACLVIAFVLP 226
            NV G  +    E  NE   V+     ++G     G   W+G  F NFL+AC+V AFV+ 
Sbjct: 148 GNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFVIS 201

[Close]

BLAST of Sed0002973 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-24
Identity = 60/126 (47.62%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 108 GERVCRICHLGSNQ-----------ASELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMC 167
           GER+CRICH GS+Q           + EL+++GC CK+ELG+AH HCAEAWFKL+GN +C
Sbjct: 98  GERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVC 157

Query: 168 EICGEIAKNVEGVGDSRFMEEWNEGRSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFV 223
           EICG  AKNV      R ME+W+  R    +G    RG    RGQ  C F++  L I  +
Sbjct: 158 EICGCTAKNV----TVRLMEDWSGERDNTLDGR-RRRG----RGQSCCIFMVFLLTI-LL 213

[Close]

BLAST of Sed0002973 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-19
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 109 ERVCRICHLG----SNQASELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEIAK 168
           E+ CRICHLG     ++  + + LGC CK +LG  H  CA+ WFK+KGN+ CEIC  IA+
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQ 134

Query: 169 NVEGVGD-------SRFMEEWNEGRSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFVL 226
           N   V +          +++   G +        S      RG  F NFL+ C+V AFV+
Sbjct: 135 NFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLTCMVCAFVI 194

[Close]

BLAST of Sed0002973 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-19
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 109 ERVCRICHLG-SNQASELVQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVE 168
           E+ CRICHLG        ++LGC CK +L +AH  CAE WFK+KG++ CEIC  +A+NV 
Sbjct: 81  EKDCRICHLGVETSGGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARNVG 140

Query: 169 G----VGDSRFMEEWNEG-RSVDSNGNISSRGWGCWRGQPFCNFLMACLVIAFVLPWFLR 226
           G    VG +    E   G  +    G  ++     W+ Q   N ++AC+V  F + W   
Sbjct: 141 GANEMVGSTMEERELRNGEETAAGEGGGATVVENRWQPQRVVNLVLACMVFGFFISWIFH 200

[Close]

BLAST of Sed0002973 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-19
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 126 VQLGCDCKHELGIAHTHCAEAWFKLKGNRMCEICGEIAKNVEGVGDSRFMEEWNEGRSVD 185
           +QLGC CK +LG+AH+ CAE WFK+KGN  CEICG +A NV G   +         ++  
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAA 189

Query: 186 SNGNISSRGWGCWRGQPFCNFLMACLVIAFVLPWFLRVNI 226
                 +   G W G+P  NFL+A +V AFV+ W     +
Sbjct: 190 GQSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

The following BLAST results are available for this feature:

BLAST of Sed0002973 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883622.1	2.7e-88	65.02	uncharacterized protein LOC120074540 [Benincasa hispida]	[more]
XP_008439727.1	7.9e-88	66.79	PREDICTED: uncharacterized protein LOC103484442 [Cucumis melo]	[more]
XP_011658254.1	1.5e-86	65.69	uncharacterized protein LOC105435966 isoform X1 [Cucumis sativus] >KGN49315.1 hy...	[more]
XP_022926134.1	2.2e-82	68.85	uncharacterized protein LOC111433334 [Cucurbita moschata] >XP_022926135.1 unchar...	[more]
KAG7034652.1	2.9e-82	68.85	hypothetical protein SDJN02_04382, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0002973 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002973 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B025	3.8e-88	66.79	uncharacterized protein LOC103484442 OS=Cucumis melo OX=3656 GN=LOC103484442 PE=...	[more]
A0A0A0KHW6	7.2e-87	65.69	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51967...	[more]
A0A6J1EK57	1.1e-82	68.85	uncharacterized protein LOC111433334 OS=Cucurbita moschata OX=3662 GN=LOC1114333...	[more]
A0A6J1INW7	5.9e-81	68.03	uncharacterized protein LOC111478615 OS=Cucurbita maxima OX=3661 GN=LOC111478615...	[more]
A0A6J1KX84	5.9e-81	63.91	uncharacterized protein LOC111497182 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0002973 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	6.0e-25	35.83	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	1.7e-24	47.62	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.3e-19	37.50	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.9e-19	36.59	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.9e-19	41.00	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 111..154 e-value: 2.1E-5 score: 30.3
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 112..151 e-value: 1.5E-6 score: 28.2
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 104..160 score: 14.529562
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 96..160 e-value: 2.7E-11 score: 44.9
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 46..154
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 109..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002973.1	Sed0002973.1	mRNA
Sed0002973.2	Sed0002973.2	mRNA
Sed0002973.3	Sed0002973.3	mRNA
Sed0002973.4	Sed0002973.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding