Sed0000659.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCACAAAACCCCCCACCGGAAAATATGAACTCCGGCACCCGCGGCCATGTTCTCCGATCAACCCAAAAAGATCGCCACACCAAGGTGTTCACGGCTAAGGGCCCTCGCCACCGCCGTGTAAGACTCTCGGCTCTCACCGCCATCCGGTTCTACGATTTGCAAGACCGGTTGGGGTACGACCGGCCCAGTAGAGCCGTCGATTGGCTTATCAATAACGCCAGATTCGCCATTGATAAGCTTCAAAACCCAGATCGGAAAACAGGGGAAACAGAGCACTCTGTTTTTAATTCACAGTTAAAGCTGACATCCGTCGCCGGAAACTTCCAATCGTTCTTTTCGGCGACCTCTTCCGCCGGGACTGTCGATTTTATGGGCTTTCCGTCGGGTTTGATTCCGAGCCTCGATGACCCGGTTCGAGATCTCGCCTTATCTCTCCATAGCTTTCGCGATTCTCGGGTAATTCCGTCGGAGGAAGATGGTAATCGTCCACTGGCGAGGAACCAACGGGTTGCCACCGATTCGATTCCGGCAGGGGTGTGGTTTCAGCGGCCGTTGTTGGGGAACAATCCGGCAGCAGCGCTCGAGGGCCGGTTTGATGGGTCGTCGGACTTCCGTACTCCGTCGCGGATTTGAAAGCCGATGGACAAAACGGCATCGTTTATCGCGGGTGTTCAGAGTTTTCGCTGGTAGATTTAATTTGAATTTTCTAAAAGGATTATGGCTAATGTAATAGGTAATTCGAATTTAGCTATAAATATTTGATAGACTTCAACTTTACTTGTCTTTTTATTAAAAAGTTTAGTCCGAAAATAAGAAGATTCGACTGTATTATGTTAATTTGG ATTTCACAAAACCCCCCACCGGAAAATATGAACTCCGGCACCCGCGGCCATGTTCTCCGATCAACCCAAAAAGATCGCCACACCAAGGTGTTCACGGCTAAGGGCCCTCGCCACCGCCGTGTAAGACTCTCGGCTCTCACCGCCATCCGGTTCTACGATTTGCAAGACCGGTTGGGGTACGACCGGCCCAGTAGAGCCGTCGATTGGCTTATCAATAACGCCAGATTCGCCATTGATAAGCTTCAAAACCCAGATCGGAAAACAGGGGAAACAGAGCACTCTGTTTTTAATTCACAGTTAAAGCTGACATCCGTCGCCGGAAACTTCCAATCGTTCTTTTCGGCGACCTCTTCCGCCGGGACTGTCGATTTTATGGGCTTTCCGTCGGGTTTGATTCCGAGCCTCGATGACCCGGTTCGAGATCTCGCCTTATCTCTCCATAGCTTTCGCGATTCTCGGGTAATTCCGTCGGAGGAAGATGGTAATCGTCCACTGGCGAGGAACCAACGGGTTGCCACCGATTCGATTCCGGCAGGGGTGTGGTTTCAGCGGCCGTTGTTGGGGAACAATCCGGCAGCAGCGCTCGAGGGCCGGTTTGATGGGTCGTCGGACTTCCGTACTCCGTCGCGGATTTGAAAGCCGATGGACAAAACGGCATCGTTTATCGCGGGTGTTCAGAGTTTTCGCTGGTAGATTTAATTTGAATTTTCTAAAAGGATTATGGCTAATGTAATAGGTAATTCGAATTTAGCTATAAATATTTGATAGACTTCAACTTTACTTGTCTTTTTATTAAAAAGTTTAGTCCGAAAATAAGAAGATTCGACTGTATTATGTTAATTTGG ATGAACTCCGGCACCCGCGGCCATGTTCTCCGATCAACCCAAAAAGATCGCCACACCAAGGTGTTCACGGCTAAGGGCCCTCGCCACCGCCGTGTAAGACTCTCGGCTCTCACCGCCATCCGGTTCTACGATTTGCAAGACCGGTTGGGGTACGACCGGCCCAGTAGAGCCGTCGATTGGCTTATCAATAACGCCAGATTCGCCATTGATAAGCTTCAAAACCCAGATCGGAAAACAGGGGAAACAGAGCACTCTGTTTTTAATTCACAGTTAAAGCTGACATCCGTCGCCGGAAACTTCCAATCGTTCTTTTCGGCGACCTCTTCCGCCGGGACTGTCGATTTTATGGGCTTTCCGTCGGGTTTGATTCCGAGCCTCGATGACCCGGTTCGAGATCTCGCCTTATCTCTCCATAGCTTTCGCGATTCTCGGGTAATTCCGTCGGAGGAAGATGGTAATCGTCCACTGGCGAGGAACCAACGGGTTGCCACCGATTCGATTCCGGCAGGGGTGTGGTTTCAGCGGCCGTTGTTGGGGAACAATCCGGCAGCAGCGCTCGAGGGCCGGTTTGATGGGTCGTCGGACTTCCGTACTCCGTCGCGGATTTGA MNSGTRGHVLRSTQKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNARFAIDKLQNPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGTVDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIPAGVWFQRPLLGNNPAAALEGRFDGSSDFRTPSRI Homology
BLAST of Sed0000659.1 vs. NCBI nr
Match: XP_023529225.1 (transcription factor TCP10-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 209.9 bits (533), Expect = 2.0e-50 Identity = 118/235 (50.21%), Postives = 148/235 (62.98%), Query Frame = 0
BLAST of Sed0000659.1 vs. NCBI nr
Match: KAG6589264.1 (Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022963.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 209.5 bits (532), Expect = 2.6e-50 Identity = 118/235 (50.21%), Postives = 147/235 (62.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. NCBI nr
Match: XP_022989259.1 (transcription factor TCP10-like [Cucurbita maxima]) HSP 1 Score: 207.2 bits (526), Expect = 1.3e-49 Identity = 117/235 (49.79%), Postives = 147/235 (62.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. NCBI nr
Match: XP_022930891.1 (transcription factor TCP10-like [Cucurbita moschata]) HSP 1 Score: 205.3 bits (521), Expect = 5.0e-49 Identity = 115/235 (48.94%), Postives = 147/235 (62.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. NCBI nr
Match: XP_038877605.1 (transcription factor TCP10-like [Benincasa hispida]) HSP 1 Score: 198.7 bits (504), Expect = 4.7e-47 Identity = 108/181 (59.67%), Postives = 129/181 (71.27%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy Swiss-Prot
Match: O82277 (Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.6e-24 Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy Swiss-Prot
Match: A2WM14 (Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22 Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy Swiss-Prot
Match: Q8LT07 (Transcription factor PCF5 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF5 PE=2 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22 Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy Swiss-Prot
Match: Q9MAH8 (Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22 Identity = 90/250 (36.00%), Postives = 116/250 (46.40%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy Swiss-Prot
Match: Q8LPR5 (Transcription factor TCP4 OS=Arabidopsis thaliana OX=3702 GN=TCP4 PE=1 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 5.9e-21 Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy TrEMBL
Match: A0A6J1JNV1 (transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 6.3e-50 Identity = 117/235 (49.79%), Postives = 147/235 (62.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy TrEMBL
Match: A0A6J1ES58 (transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 2.4e-49 Identity = 115/235 (48.94%), Postives = 147/235 (62.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy TrEMBL
Match: A0A6J1D1N8 (transcription factor TCP10-like OS=Momordica charantia OX=3673 GN=LOC111016780 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34 Identity = 96/192 (50.00%), Postives = 117/192 (60.94%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy TrEMBL
Match: A0A1S2XCF0 (transcription factor TCP4-like OS=Cicer arietinum OX=3827 GN=LOC101506032 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30 Identity = 90/208 (43.27%), Postives = 120/208 (57.69%), Query Frame = 0
BLAST of Sed0000659.1 vs. ExPASy TrEMBL
Match: A0A2C9UT11 (TCP domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G138300 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 8.0e-29 Identity = 91/237 (38.40%), Postives = 125/237 (52.74%), Query Frame = 0
BLAST of Sed0000659.1 vs. TAIR 10
Match: AT2G31070.1 (TCP domain protein 10 ) HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25 Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = 0
BLAST of Sed0000659.1 vs. TAIR 10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 ) HSP 1 Score: 106.3 bits (264), Expect = 2.9e-23 Identity = 90/250 (36.00%), Postives = 116/250 (46.40%), Query Frame = 0
BLAST of Sed0000659.1 vs. TAIR 10
Match: AT3G15030.1 (TCP family transcription factor 4 ) HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22 Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. TAIR 10
Match: AT3G15030.2 (TCP family transcription factor 4 ) HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22 Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of Sed0000659.1 vs. TAIR 10
Match: AT3G15030.3 (TCP family transcription factor 4 ) HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22 Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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