Sed0000659 (gene) Chayote v1

Overview


Name	Sed0000659
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TCP transcription factor
Location	LG05: 32682141 .. 32682985 (+)
RNA-Seq Expression	Sed0000659
Synteny	Sed0000659

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCACAAAACCCCCCACCGGAAAATATGAACTCCGGCACCCGCGGCCATGTTCTCCGATCAACCCAAAAAGATCGCCACACCAAGGTGTTCACGGCTAAGGGCCCTCGCCACCGCCGTGTAAGACTCTCGGCTCTCACCGCCATCCGGTTCTACGATTTGCAAGACCGGTTGGGGTACGACCGGCCCAGTAGAGCCGTCGATTGGCTTATCAATAACGCCAGATTCGCCATTGATAAGCTTCAAAACCCAGATCGGAAAACAGGGGAAACAGAGCACTCTGTTTTTAATTCACAGTTAAAGCTGACATCCGTCGCCGGAAACTTCCAATCGTTCTTTTCGGCGACCTCTTCCGCCGGGACTGTCGATTTTATGGGCTTTCCGTCGGGTTTGATTCCGAGCCTCGATGACCCGGTTCGAGATCTCGCCTTATCTCTCCATAGCTTTCGCGATTCTCGGGTAATTCCGTCGGAGGAAGATGGTAATCGTCCACTGGCGAGGAACCAACGGGTTGCCACCGATTCGATTCCGGCAGGGGTGTGGTTTCAGCGGCCGTTGTTGGGGAACAATCCGGCAGCAGCGCTCGAGGGCCGGTTTGATGGGTCGTCGGACTTCCGTACTCCGTCGCGGATTTGAAAGCCGATGGACAAAACGGCATCGTTTATCGCGGGTGTTCAGAGTTTTCGCTGGTAGATTTAATTTGAATTTTCTAAAAGGATTATGGCTAATGTAATAGGTAATTCGAATTTAGCTATAAATATTTGATAGACTTCAACTTTACTTGTCTTTTTATTAAAAAGTTTAGTCCGAAAATAAGAAGATTCGACTGTATTATGTTAATTTGG

mRNA sequence

ATTTCACAAAACCCCCCACCGGAAAATATGAACTCCGGCACCCGCGGCCATGTTCTCCGATCAACCCAAAAAGATCGCCACACCAAGGTGTTCACGGCTAAGGGCCCTCGCCACCGCCGTGTAAGACTCTCGGCTCTCACCGCCATCCGGTTCTACGATTTGCAAGACCGGTTGGGGTACGACCGGCCCAGTAGAGCCGTCGATTGGCTTATCAATAACGCCAGATTCGCCATTGATAAGCTTCAAAACCCAGATCGGAAAACAGGGGAAACAGAGCACTCTGTTTTTAATTCACAGTTAAAGCTGACATCCGTCGCCGGAAACTTCCAATCGTTCTTTTCGGCGACCTCTTCCGCCGGGACTGTCGATTTTATGGGCTTTCCGTCGGGTTTGATTCCGAGCCTCGATGACCCGGTTCGAGATCTCGCCTTATCTCTCCATAGCTTTCGCGATTCTCGGGTAATTCCGTCGGAGGAAGATGGTAATCGTCCACTGGCGAGGAACCAACGGGTTGCCACCGATTCGATTCCGGCAGGGGTGTGGTTTCAGCGGCCGTTGTTGGGGAACAATCCGGCAGCAGCGCTCGAGGGCCGGTTTGATGGGTCGTCGGACTTCCGTACTCCGTCGCGGATTTGAAAGCCGATGGACAAAACGGCATCGTTTATCGCGGGTGTTCAGAGTTTTCGCTGGTAGATTTAATTTGAATTTTCTAAAAGGATTATGGCTAATGTAATAGGTAATTCGAATTTAGCTATAAATATTTGATAGACTTCAACTTTACTTGTCTTTTTATTAAAAAGTTTAGTCCGAAAATAAGAAGATTCGACTGTATTATGTTAATTTGG

Coding sequence (CDS)

ATGAACTCCGGCACCCGCGGCCATGTTCTCCGATCAACCCAAAAAGATCGCCACACCAAGGTGTTCACGGCTAAGGGCCCTCGCCACCGCCGTGTAAGACTCTCGGCTCTCACCGCCATCCGGTTCTACGATTTGCAAGACCGGTTGGGGTACGACCGGCCCAGTAGAGCCGTCGATTGGCTTATCAATAACGCCAGATTCGCCATTGATAAGCTTCAAAACCCAGATCGGAAAACAGGGGAAACAGAGCACTCTGTTTTTAATTCACAGTTAAAGCTGACATCCGTCGCCGGAAACTTCCAATCGTTCTTTTCGGCGACCTCTTCCGCCGGGACTGTCGATTTTATGGGCTTTCCGTCGGGTTTGATTCCGAGCCTCGATGACCCGGTTCGAGATCTCGCCTTATCTCTCCATAGCTTTCGCGATTCTCGGGTAATTCCGTCGGAGGAAGATGGTAATCGTCCACTGGCGAGGAACCAACGGGTTGCCACCGATTCGATTCCGGCAGGGGTGTGGTTTCAGCGGCCGTTGTTGGGGAACAATCCGGCAGCAGCGCTCGAGGGCCGGTTTGATGGGTCGTCGGACTTCCGTACTCCGTCGCGGATTTGA

Protein sequence

MNSGTRGHVLRSTQKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNARFAIDKLQNPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGTVDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIPAGVWFQRPLLGNNPAAALEGRFDGSSDFRTPSRI

Homology

[Close]

BLAST of Sed0000659 vs. NCBI nr
Match: XP_023529225.1 (transcription factor TCP10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 2.0e-50
Identity = 118/235 (50.21%), Postives = 148/235 (62.98%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KVFTAKGPR RRVRLSA TAIRFYD+QD+LGYDRPS+AVDWLI  A
Sbjct: 15  GHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKA 74

Query: 67  RFAIDKLQ-------------NPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGT 126
           +FAIDKL+             +P+RKTGETE      Q  +   A + + FF  TS+  +
Sbjct: 75  KFAIDKLRELPPYSPIANGFADPNRKTGETETESSELQSAVGHFAPSLEPFFPTTSATTS 134

Query: 127 VDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP---- 186
           ++F G+P  LI +   P RDLALSLH+F DSR+IPSE++ N      QR+  DSIP    
Sbjct: 135 INFQGYPVDLILTPTGPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDSIPAGYE 194

Query: 187 ---AGVWFQRPLLGNNPAAALE------------------GRFDGSSDFRTPSRI 203
              AG+W Q+PL+G N  AA                    GRF+G S+F TPSRI
Sbjct: 195 GGDAGLWLQQPLMGQNSTAAFSQVPMHGWSNQIRQSAGHGGRFEGPSEFCTPSRI 249

[Close]

BLAST of Sed0000659 vs. NCBI nr
Match: KAG6589264.1 (Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022963.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 2.6e-50
Identity = 118/235 (50.21%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KVFTAKGPR RRVRLSA TAIRFYD+QD+LGYDRPS+AVDWLI  A
Sbjct: 15  GHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKA 74

Query: 67  RFAIDKLQ-------------NPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGT 126
           +FAIDKL+             +P+RKTGETE      Q  +   A + + FF  TS+  +
Sbjct: 75  KFAIDKLRELPPYSPIANGFADPNRKTGETETESSGLQSAVGHFAPSLEPFFPTTSATTS 134

Query: 127 VDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP---- 186
           ++F G+P  LI +  DP RDLALSLH+F DSR+IPSE++ N      QR+  DSIP    
Sbjct: 135 INFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDSIPAGYE 194

Query: 187 ---AGVWFQRPLLGNNPAAALE------------------GRFDGSSDFRTPSRI 203
              AG+W Q+PL+G N  AA                    GR  G S+F TPSRI
Sbjct: 195 GGDAGLWLQQPLMGQNSTAAFSQVPMHGWSDQIRQSAGHGGRLQGPSEFCTPSRI 249

[Close]

BLAST of Sed0000659 vs. NCBI nr
Match: XP_022989259.1 (transcription factor TCP10-like [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-49
Identity = 117/235 (49.79%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KVFTAKGPR RRVRLSA TAIRFYD+QD+LGYDRPS+AVDWLI  A
Sbjct: 15  GHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKA 74

Query: 67  RFAIDKLQ-------------NPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGT 126
           +FAIDKL+             +P+RKTGE E      Q  +   A + + FF  TS+  +
Sbjct: 75  KFAIDKLRELPPYSPIAHGFADPNRKTGERETESTELQSAVGHFAPSLEPFFPTTSATTS 134

Query: 127 VDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP---- 186
           ++F G+P  LI +  DP RDLALSLH+F DSR+IPSE++ N      QR+  DSIP    
Sbjct: 135 INFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDSIPAGYE 194

Query: 187 ---AGVWFQRPLLGNNPAAALE------------------GRFDGSSDFRTPSRI 203
              AG+W Q+PL+  N  AA                    GRF+G S+F TPSRI
Sbjct: 195 GGDAGLWLQQPLMEQNSTAAFSQVPMHGWSNQIRQSAGHGGRFEGPSEFCTPSRI 249

[Close]

BLAST of Sed0000659 vs. NCBI nr
Match: XP_022930891.1 (transcription factor TCP10-like [Cucurbita moschata])

HSP 1 Score: 205.3 bits (521), Expect = 5.0e-49
Identity = 115/235 (48.94%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KVFT+KGPR RRVRLSA TAIRFYD+QD+LGYDRPS+AVDWLI  A
Sbjct: 15  GHIIRSTARKDRHSKVFTSKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKA 74

Query: 67  RFAIDKLQ-------------NPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGT 126
           +FAIDKL+             +P++KTGETE      Q  +   A + + FF  TS+  +
Sbjct: 75  KFAIDKLRELPPYSPIANGFADPNQKTGETETESSELQSAVGHFAPSLEPFFPTTSATTS 134

Query: 127 VDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP---- 186
           ++F G+P  LI +  DP RDLALSLH+F +SR+IPSE++ N      QR+  DSIP    
Sbjct: 135 INFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDSIPAGYE 194

Query: 187 ---AGVWFQRPLLGNNPAAALE------------------GRFDGSSDFRTPSRI 203
              AG+W Q+PL+G N  AA                    GR  G S+F TPSRI
Sbjct: 195 GGDAGLWLQQPLMGQNSTAAFSQVQMHGWSDQIRQSAGHGGRLQGPSEFCTPSRI 249

[Close]

BLAST of Sed0000659 vs. NCBI nr
Match: XP_038877605.1 (transcription factor TCP10-like [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-47
Identity = 108/181 (59.67%), Postives = 129/181 (71.27%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH+LRST +KDRH+KVFTAKGPR RRVRLSA TAIRFYD+QDRLGYDRPS+AVDWLI  A
Sbjct: 15  GHILRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKA 74

Query: 67  RFAIDKLQ-------------NPDRKTGETEHSVFNSQLKLTSVAGNF----QSFFSATS 126
           +FAIDKL+             + + KTGET+   F  QL+L S  GNF    +S F  +S
Sbjct: 75  KFAIDKLKELPPYFPIVSGLTDSNPKTGETDSPEFGFQLQLQSATGNFAPPPESLFPMSS 134

Query: 127 SAGTVDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP 170
           +  + +F G+P  LI    DPVRDLALSLH+F DSRVIPSEEDG+   A +QR+  DSIP
Sbjct: 135 ATVSTNFQGYPVNLISRPTDPVRDLALSLHNFHDSRVIPSEEDGSHSTANDQRLIADSIP 194

[Close]

BLAST of Sed0000659 vs. ExPASy Swiss-Prot
Match: O82277 (Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-24
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++R+T +KDRH+KVFT+KGPR RRVRLSA TAI+FYD+QDRLGYDRPS+AVDWLI  A
Sbjct: 21  GHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 80

Query: 67  RFAIDKLQNPDRKTGETEHSVFNSQLKLTS-------------VAGN------FQSFFSA 126
           + AIDKL+  +  T  T     N++ +  +             VA N       ++FF A
Sbjct: 81  KTAIDKLELGETTTTTTRQEPVNTKPESPTLVFQRENNDQTQFVAANLDPEDAMKTFFPA 140

Query: 127 TSSAG-----TVDFMGFP----SGLIPSLDDP----VRDLALSLHSFR 142
           T++        ++F  +P    + ++     P     +DL LSLH F+
Sbjct: 141 TTTTNGGGGTNINFQNYPHQDDNNMVSRTTTPPPNLSQDLGLSLHPFQ 188

[Close]

BLAST of Sed0000659 vs. ExPASy Swiss-Prot
Match: A2WM14 (Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TA+GPR RRVRLSA TAI+FYD+QDRLGYDRPS+AVDWLI NA
Sbjct: 205 GHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNA 264

Query: 67  RFAIDKL 73
           + AIDKL
Sbjct: 265 KDAIDKL 271

[Close]

BLAST of Sed0000659 vs. ExPASy Swiss-Prot
Match: Q8LT07 (Transcription factor PCF5 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF5 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TA+GPR RRVRLSA TAI+FYD+QDRLGYDRPS+AVDWLI NA
Sbjct: 81  GHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNA 140

Query: 67  RFAIDKL 73
           + AIDKL
Sbjct: 141 KDAIDKL 147

[Close]

BLAST of Sed0000659 vs. ExPASy Swiss-Prot
Match: Q9MAH8 (Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22
Identity = 90/250 (36.00%), Postives = 116/250 (46.40%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TAKGPR RRVRLSA TAI+FYD+QDRLG+DRPS+AVDWLI  A
Sbjct: 41  GHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA 100

Query: 67  RFAIDKLQ-----NP---------------DRKT-----------GETEH---------- 126
           + AID L      NP                RKT            ETEH          
Sbjct: 101 KSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKTKTLISPPPPQPEETEHHRIGEEEDNE 160

Query: 127 -SVFNSQLKLTSVAGNFQSFFSATSSAGTVDFMGFPSGLIPSLDDPVRDLALSLHSFRDS 186
            S   + +   S+A   +SFF   S+  +        G   + D     L LSL SF++ 
Sbjct: 161 SSFLPASMDSDSIADTIKSFFPVASTQQSYHHQPPSRGNTQNQD----LLRLSLQSFQNG 220

Query: 187 RVIPSEED-------GNRPLARNQRVA----TDSIPAGVWFQRPLLGNNPAAALEGRFDG 203
              P++ +        N  LA +   A    +   P     QR +  NN  AA      G
Sbjct: 221 PPFPNQTEPALFSGQSNNQLAFDSSTASWEQSHQSPEFGKIQRLVSWNNVGAAESAGSTG 280

[Close]

BLAST of Sed0000659 vs. ExPASy Swiss-Prot
Match: Q8LPR5 (Transcription factor TCP4 OS=Arabidopsis thaliana OX=3702 GN=TCP4 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.9e-21
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TAKGPR RRVRLSA TAI+FYD+QDRLG+DRPS+AVDWLI  A
Sbjct: 37  GHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 96

Query: 67  RFAIDKL 73
           + +ID+L
Sbjct: 97  KTSIDEL 103

[Close]

BLAST of Sed0000659 vs. ExPASy TrEMBL
Match: A0A6J1JNV1 (transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 6.3e-50
Identity = 117/235 (49.79%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KVFTAKGPR RRVRLSA TAIRFYD+QD+LGYDRPS+AVDWLI  A
Sbjct: 15  GHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKA 74

Query: 67  RFAIDKLQ-------------NPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGT 126
           +FAIDKL+             +P+RKTGE E      Q  +   A + + FF  TS+  +
Sbjct: 75  KFAIDKLRELPPYSPIAHGFADPNRKTGERETESTELQSAVGHFAPSLEPFFPTTSATTS 134

Query: 127 VDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP---- 186
           ++F G+P  LI +  DP RDLALSLH+F DSR+IPSE++ N      QR+  DSIP    
Sbjct: 135 INFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDSIPAGYE 194

Query: 187 ---AGVWFQRPLLGNNPAAALE------------------GRFDGSSDFRTPSRI 203
              AG+W Q+PL+  N  AA                    GRF+G S+F TPSRI
Sbjct: 195 GGDAGLWLQQPLMEQNSTAAFSQVPMHGWSNQIRQSAGHGGRFEGPSEFCTPSRI 249

[Close]

BLAST of Sed0000659 vs. ExPASy TrEMBL
Match: A0A6J1ES58 (transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.4e-49
Identity = 115/235 (48.94%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KVFT+KGPR RRVRLSA TAIRFYD+QD+LGYDRPS+AVDWLI  A
Sbjct: 15  GHIIRSTARKDRHSKVFTSKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKA 74

Query: 67  RFAIDKLQ-------------NPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGT 126
           +FAIDKL+             +P++KTGETE      Q  +   A + + FF  TS+  +
Sbjct: 75  KFAIDKLRELPPYSPIANGFADPNQKTGETETESSELQSAVGHFAPSLEPFFPTTSATTS 134

Query: 127 VDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP---- 186
           ++F G+P  LI +  DP RDLALSLH+F +SR+IPSE++ N      QR+  DSIP    
Sbjct: 135 INFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDSIPAGYE 194

Query: 187 ---AGVWFQRPLLGNNPAAALE------------------GRFDGSSDFRTPSRI 203
              AG+W Q+PL+G N  AA                    GR  G S+F TPSRI
Sbjct: 195 GGDAGLWLQQPLMGQNSTAAFSQVQMHGWSDQIRQSAGHGGRLQGPSEFCTPSRI 249

[Close]

BLAST of Sed0000659 vs. ExPASy TrEMBL
Match: A0A6J1D1N8 (transcription factor TCP10-like OS=Momordica charantia OX=3673 GN=LOC111016780 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34
Identity = 96/192 (50.00%), Postives = 117/192 (60.94%), Query Frame = 0


Query: 1   MNSGTRGHVLRS---TQKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRA 60
           M +G  GH+LRS    +KDRH+KV TAKGPR RR+RLSA TAIRFYDLQDRLGYDRPSRA
Sbjct: 1   MKTGAGGHILRSGATARKDRHSKVSTAKGPRDRRLRLSAHTAIRFYDLQDRLGYDRPSRA 60

Query: 61  VDWLINNARFAIDKL-QNPDRKTGETEHSVFNSQLKLTSVAGNFQSFFSATSSAGTVDFM 120
           VDWLIN A+FAID L + P     +++     SQL++           SATS+  +++F 
Sbjct: 61  VDWLINKAKFAIDNLAELPPNSITDSD-----SQLQMQ----------SATSATTSINFQ 120

Query: 121 GFPSGLIPSLDDPVRDLALSLHSFRDSRVIPSEEDGNRPLARNQRVATDSIP---AGVWF 180
           G+P  LI S  DP  +L LSLH+F DS                     DSIP   AG+W 
Sbjct: 121 GYPVDLILSPTDPPENLRLSLHNFHDSS------------------PADSIPGEDAGLWL 159

Query: 181 QRPLLGNNPAAA 186
           Q+PLLG N  AA
Sbjct: 181 QQPLLGQNSEAA 159

[Close]

BLAST of Sed0000659 vs. ExPASy TrEMBL
Match: A0A1S2XCF0 (transcription factor TCP4-like OS=Cicer arietinum OX=3827 GN=LOC101506032 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 90/208 (43.27%), Postives = 120/208 (57.69%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV+TAKGPR RRVRLSA TAI+FYD+QDRLGYDRPS+AVDWLI  A
Sbjct: 16  GHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 75

Query: 67  RFAIDKLQN-------PDRKTGE-------------------TEHSVFNSQLKLTSVAGN 126
           + AIDKL         P+  T E                   +E S +N QL+ T    N
Sbjct: 76  KSAIDKLAELPPWNPIPNNVTEELQQEENNAGTRDMVIAAENSESSGYNFQLQDTENHHN 135

Query: 127 FQ------------SFFSATSSAGTVDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVI- 171
                         +FF  +S+A +++F  +PS +I   ++ ++DL LSLHSF+D  ++ 
Sbjct: 136 HSAFIPSNIDTDAIAFFPTSSAASSINFQSYPSDIISRTNNSIQDLGLSLHSFQDHGMMH 195

[Close]

BLAST of Sed0000659 vs. ExPASy TrEMBL
Match: A0A2C9UT11 (TCP domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G138300 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.0e-29
Identity = 91/237 (38.40%), Postives = 125/237 (52.74%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV+T+KGPR RRVRLSA TAI+FYD+QDRLGYDRPS+AVDWLI  A
Sbjct: 14  GHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 73

Query: 67  RFAIDKL---------QNPDRKTGETEHSVFNSQLKLT--------------SVAGN--- 126
           + AIDKL          N      ET+H+  +S++ +                +A N   
Sbjct: 74  KSAIDKLAELPPWHPTANDANGMMETDHNAGSSEMAIAEQSESSGYSFQLHRQLADNPSN 133

Query: 127 -------------FQSFFSATSSAGTVDFMGFPSGLIPSLDDPVRDLALSLHSFRDSRVI 186
                         +S F  +S+  T++F G+P  +I    +   DL LSLH F+D  +I
Sbjct: 134 DSSFITPPIDPDTMKSLFPTSSTTSTMNFQGYPPEIISRTTNHSEDLGLSLHPFQDQDLI 193

Query: 187 --PSEEDGNRPLARNQRVATDSIPAG--VWFQRPLLGNNPAAALEGRFDGSSDFRTP 200
              S+ D +   + +Q +   S P G    FQR +  +N     E R DG   F  P
Sbjct: 194 HGQSQADTSHTPSNDQNLFGGSAPVGYEANFQRMMAWSNNTGT-ENRTDGGFGFNPP 249

[Close]

BLAST of Sed0000659 vs. TAIR 10
Match: AT2G31070.1 (TCP domain protein 10 )

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++R+T +KDRH+KVFT+KGPR RRVRLSA TAI+FYD+QDRLGYDRPS+AVDWLI  A
Sbjct: 21  GHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 80

Query: 67  RFAIDKLQNPDRKTGETEHSVFNSQLKLTS-------------VAGN------FQSFFSA 126
           + AIDKL+  +  T  T     N++ +  +             VA N       ++FF A
Sbjct: 81  KTAIDKLELGETTTTTTRQEPVNTKPESPTLVFQRENNDQTQFVAANLDPEDAMKTFFPA 140

Query: 127 TSSAG-----TVDFMGFP----SGLIPSLDDP----VRDLALSLHSFR 142
           T++        ++F  +P    + ++     P     +DL LSLH F+
Sbjct: 141 TTTTNGGGGTNINFQNYPHQDDNNMVSRTTTPPPNLSQDLGLSLHPFQ 188

[Close]

BLAST of Sed0000659 vs. TAIR 10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 )

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-23
Identity = 90/250 (36.00%), Postives = 116/250 (46.40%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TAKGPR RRVRLSA TAI+FYD+QDRLG+DRPS+AVDWLI  A
Sbjct: 41  GHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA 100

Query: 67  RFAIDKLQ-----NP---------------DRKT-----------GETEH---------- 126
           + AID L      NP                RKT            ETEH          
Sbjct: 101 KSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKTKTLISPPPPQPEETEHHRIGEEEDNE 160

Query: 127 -SVFNSQLKLTSVAGNFQSFFSATSSAGTVDFMGFPSGLIPSLDDPVRDLALSLHSFRDS 186
            S   + +   S+A   +SFF   S+  +        G   + D     L LSL SF++ 
Sbjct: 161 SSFLPASMDSDSIADTIKSFFPVASTQQSYHHQPPSRGNTQNQD----LLRLSLQSFQNG 220

Query: 187 RVIPSEED-------GNRPLARNQRVA----TDSIPAGVWFQRPLLGNNPAAALEGRFDG 203
              P++ +        N  LA +   A    +   P     QR +  NN  AA      G
Sbjct: 221 PPFPNQTEPALFSGQSNNQLAFDSSTASWEQSHQSPEFGKIQRLVSWNNVGAAESAGSTG 280

[Close]

BLAST of Sed0000659 vs. TAIR 10
Match: AT3G15030.1 (TCP family transcription factor 4 )

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TAKGPR RRVRLSA TAI+FYD+QDRLG+DRPS+AVDWLI  A
Sbjct: 37  GHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 96

Query: 67  RFAIDKL 73
           + +ID+L
Sbjct: 97  KTSIDEL 103

[Close]

BLAST of Sed0000659 vs. TAIR 10
Match: AT3G15030.2 (TCP family transcription factor 4 )

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TAKGPR RRVRLSA TAI+FYD+QDRLG+DRPS+AVDWLI  A
Sbjct: 37  GHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 96

Query: 67  RFAIDKL 73
           + +ID+L
Sbjct: 97  KTSIDEL 103

[Close]

BLAST of Sed0000659 vs. TAIR 10
Match: AT3G15030.3 (TCP family transcription factor 4 )

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 7   GHVLRST-QKDRHTKVFTAKGPRHRRVRLSALTAIRFYDLQDRLGYDRPSRAVDWLINNA 66
           GH++RST +KDRH+KV TAKGPR RRVRLSA TAI+FYD+QDRLG+DRPS+AVDWLI  A
Sbjct: 37  GHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKA 96

Query: 67  RFAIDKL 73
           + +ID+L
Sbjct: 97  KTSIDEL 103

The following BLAST results are available for this feature:

BLAST of Sed0000659 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529225.1	2.0e-50	50.21	transcription factor TCP10-like [Cucurbita pepo subsp. pepo]	[more]
KAG6589264.1	2.6e-50	50.21	Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022989259.1	1.3e-49	49.79	transcription factor TCP10-like [Cucurbita maxima]	[more]
XP_022930891.1	5.0e-49	48.94	transcription factor TCP10-like [Cucurbita moschata]	[more]
XP_038877605.1	4.7e-47	59.67	transcription factor TCP10-like [Benincasa hispida]	[more]

BLAST of Sed0000659 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82277	2.6e-24	42.26	Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1	[more]
A2WM14	1.8e-22	77.61	Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV...	[more]
Q8LT07	1.8e-22	77.61	Transcription factor PCF5 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF5 PE=2 ...	[more]
Q9MAH8	4.1e-22	36.00	Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1	[more]
Q8LPR5	5.9e-21	73.13	Transcription factor TCP4 OS=Arabidopsis thaliana OX=3702 GN=TCP4 PE=1 SV=1	[more]

BLAST of Sed0000659 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNV1	6.3e-50	49.79	transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4...	[more]
A0A6J1ES58	2.4e-49	48.94	transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE...	[more]
A0A6J1D1N8	1.7e-34	50.00	transcription factor TCP10-like OS=Momordica charantia OX=3673 GN=LOC111016780 P...	[more]
A0A1S2XCF0	3.3e-30	43.27	transcription factor TCP4-like OS=Cicer arietinum OX=3827 GN=LOC101506032 PE=4 S...	[more]
A0A2C9UT11	8.0e-29	38.40	TCP domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G138300 PE...	[more]

BLAST of Sed0000659 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31070.1	1.8e-25	42.26	TCP domain protein 10	[more]
AT1G53230.1	2.9e-23	36.00	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT3G15030.1	4.2e-22	73.13	TCP family transcription factor 4	[more]
AT3G15030.2	4.2e-22	73.13	TCP family transcription factor 4	[more]
AT3G15030.3	4.2e-22	73.13	TCP family transcription factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 13..90 e-value: 1.2E-29 score: 103.8
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 14..72 score: 28.666046
None	No IPR available	PANTHER	PTHR31072:SF136	TRANSCRIPTION FACTOR TCP10	coord: 6..81
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 6..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000659.1	Sed0000659.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity