Sed0000628.3 (mRNA) Chayote v1

Overview


Name	Sed0000628.3
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Trafficking protein particle complex subunit
Location	LG04: 42566901 .. 42572241 (-)
Sequence length	1146
RNA-Seq Expression	Sed0000628.3
Synteny	Sed0000628.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGCCATAGGCACGAAGGCCATTTGGATCTTGTAGCCCCATAGACCACAAGTCTAACACTGTTCTTCACTTTCTTTAGGCCATTTGGATCCATCATGCCTCCTGCTGGTCCTCGATCCGGCGACGCAATCTTCGCTAGCGTTGAGCGAGTGGTAAGCTTCTCAACCTCGATTCTCTCTGTGATTTGATTTGTTTCTGCTGAGAAAAATGTTATCAGATGTATCCGAATGATCTAGATGTGTGTTGTTGTTAGGTCTTGATTTCATTTCTGTTTGTGGATTACCTTCTATTGATTAAGAAGCTGAACTTGAAATCGATGTAGAATGCGGAGTTGTTTACCTTGACTTATGGAGCGACTGTTCGTCAATTGCTCACGGATCTGGAGGAGGTTGAGGAGGTCAACAAACAGCTCGATCAGATGTAAATTTACTCCAGCTTCATGTGATTTTTTAGCCATGATTTGTTTAGAATCCTGCTTTTTCCAGAGTCGACTTTTGTTTTTTGTTTGAATGATAGATGGGTCTGAATTTGATTGTTTTGTGTTGTCTTTGCTCTGTGATTTCTGTGGTTGTTCATTGGCTCTTATTCTTGCCTGGTATTGTTGGAAGCCGAATGCTTTTATATAACGAGTCCTTTCTAGTATACAAAGCTTTCTAACTTTAACTGAAAGTATTTTTTTTTTTTTTTTGTGCCTGACCTAGGTGTGGTTACTCTTGTTTCAAAAAATTACATTTTTGTTTTACATCAGTGACCACTGGGCCAGTTTACGGGTGCTTCAACTGCCACGAGACATGCGATCCCACAATATTTAAATGTCAAAGAAAATTTTTAGTAAATTAATTTTTACTAGATAGTCACCATGGATTGATCCTATTACTTCTTAATTACTTAAGGTCTTGTAGGTCACTCCACGATGGTTTTACTGAAATCATTATGCAAATCTCTGTACATTGAGGCTTAATTCTTCTCTTTGTTATTAAATGTGCTTGAATTTTAGTTTGAAAGTTTACATATTGTGCATGAGAACCACTATGGGCTGACCAAGTTGTGGTTTGGGGCACATTAAAAAAAAGGAACTTAGGGAGAATAGATCCGTACTTTATAGTGGTCACCTATGTAGGATAGTATCGAACAAGTTTATTGATAACCAATTGTTGTAGTGTCAAAATGGTTGTCCTGTGAAAAATATGCCCGAGAGTCGAGACTCGAGAGTTATGTTCTCTTATTTTGTTGGGTGTTTTTTTTTGTATGACTCTTCTTGTATTTTGTTCTTTCTTTTTCTGCACGGAAGTTGGTTTTTAATAAAAAAGTAATAGTATGCATGAGCATGACAGATACATACTTAGTACATTATTTCTTCAATACTTCATACGTTAAGTATTAAGAAGTATTTTGTGTTTGAACTTAATATCCTTGCGAAAAACAATAGATTCAGTAATCAGACTGTTTTTTCAATTGTCTTTCAGGGGCTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCTAATATTTCGAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTAGGTTGTAGTTGAATATAGGTGCCAAAGAATTTTATTCTTTCTGAAAGCCATCATGAGGCTGTTTTTTTTTTTTTGATAGGAAACAAAAACTTTCATTGATATTTGAAAAGTTACAACCTATCGAAACATATGTATAAGGCTATGCCATTGAGATAATAGAGTGGTTAAATCATAGCTACGAAATGGGTGGATAGAGTGACACCAATACAAGGCCAAGTATATAATAGAATCGAAAAGGGCTGGATAATCCTTGTTCTTGTGCTCCATGTTAAAAAGTCTGCCATTTCTCTCCTTCCATATACTCCAAAAGAAAGCATAGATAATGCTAAGCCAAAAAGTTTCAGCGTCCCCTTTGAAAGGATGCCCCATTAGAAGATAACAAATTAGATCGGCAGACTTGTTAGGCAAGGGGGTAGACCAGTTAAAAACGGTTAGAATATGTGCCCAAAAACCGGATGAATAGCAGCAATTTAGAAACAAATGATATTGCAATTCAGTATCAGAGCAGCACATGGAGCAAAAAGATGGTTGGAGGGCTGTCTTGGCACATCTCTTTTGGAGAATATCATTGGCGTTGATAGCTCCTCTACTAAGCATCATGAGGCTGTTGAAGTAGCTATGCCTGTCAAACCTATTTTTAGACGAGAAAAATATTAAGCCTATGCAGGAAAAGGAGAACGATTATAATATGAAAAAGTTATTTACACTTGCACCAATACATAGCATAAAAAAGAATTAAATCCAAAAAACTGTCGAAAGTAGAGAATGAATGTCTTAAAATTCTTGCATTCCTAAGTTCCAGAGACACCATAAGAATTGCCAACAAGAGTAGAGCTCTATTGGCATGGTATATAACCTAGTAATCAAGAGGTTACAGGTTCAAATCTCCCACCCCAAATGGCATGGATTAGAAATGAAAACCCTTGTTGATAGCAAGTCACAAAGCTTTCTTCACCCCATGGTAAGGATGTGCCACAAAAATGAATGCCAGGCAATCATAAATATCCCAACCAAAAGCATCAAGTATTGTGATCCAGTATCAAAAAGAAAATAAGCAACGAACAAAGAGATGTCCAAGAAACTTAGAATTTGAAGAACACATAAAACACCACGATAAAGAAATATAGGTGGATCTAATTCATATGCCTTTGCAGTCTCTCCACCCTGTTCATAGCCCCCAAACTAACTACGGTTCCACAGAAGTATTTAGTCTTCTTAGGATAAACATCTTTCCAAATTATCTCATATAGGAAGGATTAGCAACACCCAACAGACCTTTCGTGAGCGATTTCACTGTAAAAACTTTGGATTTGTCTTAGGGTCAAGACCAAGAGTCAGGTGAATTTTGATGGCAAAATGCAATGAAAAGATAAGATAAGCTTACCCATTCAGTAGCTTATGAATCATTAAAATTTCAAAGAAAAATCCCAAGCATCATTAACAACATTTCAGGAAGCAGCAACCATACAGTTAGGGCGATTAATTAGCTGATATAGCTGAGGGAAAGCCGATGTTAGAATCCCTTATTTATCCAAGAACAATGCCCAAAAAGACGTTGAAAGACCGTTACCAAGGCATCTTTGGGCACGTGTTGCAACAATATCAATAGTAGATCAAATAAACCGCCAAAGTGATTTATAAGAACCTCTCTGAATGGTAGCCCATAACAGCTTGAATACTTTAAGACAGATTGCAAAGAAGACATCCTCAATGGCTCTTTCCCCAAATATGTTCCTCCTTTGCAGCCAAATTTTTTAATCCATTAGCCACCTCTTTCTTCATTGTCCTTTTCCTTATAACGGTTGGTGTTTCATACTGAATACTTCCAATTTGGCTTGGTGCTGCCCTTAAAATATAGGCTGGTGGTTCAAGAGAGCTAAGATTTTGTGGATGAATGCTTGCAAAGCTCTTCTTTGGTTATTATGGAAAGAAAGGAACAAATTATTTTCAGATAACTCTTCCTCAAACATTTTTTATAACGAGAGTATTCAGTTTACTGCCTTCACTTTGAGTGCTTTACACAAATCTTTTTTAATACACAACTAATGCGATAGAAGTTTTGGGAAATTTAATAAAACCACCATGACAAAATGGAATCATCCGAACGGACAAAATTGAAGCTATGCACAAAGGAAATAACAGGACTAAAATGTTAATATAGTAGTCCCCAAGGGGTGGCACAGAAGTTAAAAATTTGGGTTTTGAAGGTATGCTCTCTTCAAGGTCCCAGGTTCGAGTGCCACCTATGACATTACTCCTTCGATGTCTTCCGGTGCCTGGTCTAGGGACAGGCGTGGTTACCCTTGTTTCAAAAAAAAAATGGTAATATAGTGTGACATTGACCAGACTCTTTTTCATTTGAAATGGATTTTTTTAATAGGTCGGGTTGAAAATGTTTTTGGGAGTGAATGCAACGGTGGCCAACTGGGATGCTGAAGGCACATGCTGCAGTATTGTTCTAGAAGACAATCCATTGGTAGACTTCGTTGAGCTGCCTGATACTTGTCAAGGTCTACATTACTGCAATATCTTAAGTGGAGTCATCAGAGGAGCACTTGAGATGGTGAGTTCTCTGCATCTTTATTATTATCATTCCTAATCATCATGGGTTGTTCTAAGACGTCAAATAAAAGTTTTAGAAATCATCAAAGGTTTAGAGGTTATGAGCTCAATCTATATCAGCCATCTACTCGTGCATTCATTTTTAATAAATTACCTTGACAACTAAATGCAGTAGTATCTGATGGTTGTTTCGTGAGAGTAAAACTATGATAGTTAAAAAGGCATTAGAGGATTAAGAGGGAACATATTCAATCCATGATGTCACCTACTTAGCAATATCCTGACATATTTTTTATGAATCAAATGTGATCAATAATATCTAACACAACCGACCACCATTAGTAGCTTAGTGATCAAAAGGACAATAGAAAAACCAAAAGGTGTAGGTCCATGGTAACCACTTATCTAGGTAATATTTTCCTACGTGTTCCTTTTTTTCATCCAATGTTGTAGAGTCTGGCGATGTGTCCTACGGGTATAGTCGAGTTTCTTTTGACATCCAAATGTGATTAGTAATATTAACACACAACCAACCTCGTCCCCAAAGAGTGGCATAATGATTGAAGATTTGGGCTTTGAAGGTATGTTCTCTTCAAGGTTTCAGGTTCGAGACTCACATGTGACATTACTCCTTGGTTGTCTTTCGGTACCTGGCCTAGGGACGGGCGGGATTACCCTTATTTCAAAAAAAACACACAACCAACCTCCATGGGCAGCTTGGTGGTCAAAATGACAATATAAAAACCAAAAGATTGTGGGAATAATCCAGGTGCGTGCAACCTGGAGACATGAATTACGTTGTTTTTCTGATTATATGTTGTTGTGGTGTTGGTGTTGGGGTCAGGTGTCAATGAAAACAGAAGTAACATGGCTACGAGACATGCTGAAAGGAGACGACACATTCGAATTACAAGTAAAATTGCTGAAGCAAATCCCTGAAGAGTACCCATACAAAGACGACGAGTAACATAATAATCTCATTCTCAAACAAACCCTCTTTTATTTCTACTTATCTGCCACTGTTTTTCGTTTGTGTTCATTTGATCTCATATATATAGCTACATTTTGGATTTCTCCAACTAATATCCATTCTATATTATTAAAAGGCAATGAGTCTTAAAACTTTTTTAGACTAAAATATCATTTTAAATTTTAGTTCGCCTTAAAATATCTTCTTTTTTTCTTTTTTCTTTTTTTTTTATCTCTGTGA

mRNA sequence

CGAGCCATAGGCACGAAGGCCATTTGGATCTTGTAGCCCCATAGACCACAAGTCTAACACTGTTCTTCACTTTCTTTAGGCCATTTGGATCCATCATGCCTCCTGCTGGTCCTCGATCCGGCGACGCAATCTTCGCTAGCGTTGAGCGAGTGAATGCGGAGTTGTTTACCTTGACTTATGGAGCGACTGTTCGTCAATTGCTCACGGATCTGGAGGAGGTTGAGGAGGTCAACAAACAGCTCGATCAGATGGGCTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCTAATATTTCGAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTCGGGTTGAAAATGTTTTTGGGAGTGAATGCAACGGTGGCCAACTGGGATGCTGAAGGCACATGCTGCAGTATTGTTCTAGAAGACAATCCATTGGTAGACTTCGTTGAGCTGCCTGATACTTGTCAAGGTCTACATTACTGCAATATCTTAAGTGGAGTCATCAGAGGAGCACTTGAGATGGTTTCAGGTTCGAGACTCACATGTGACATTACTCCTTGGTTGTCTTTCGGTACCTGGCCTAGGGACGGGCGGGATTACCCTTATTTCAAAAAAAACACACAACCAACCTCCATGGGCAGCTTGGTGGTCAAAATGACAATATAAAAACCAAAAGATTGTGGGAATAATCCAGGTGCGTGCAACCTGGAGACATGAATTACGTTGTTTTTCTGATTATATGTTGTTGTGGTGTTGGTGTTGGGGTCAGGTGTCAATGAAAACAGAAGTAACATGGCTACGAGACATGCTGAAAGGAGACGACACATTCGAATTACAAGTAAAATTGCTGAAGCAAATCCCTGAAGAGTACCCATACAAAGACGACGAGTAACATAATAATCTCATTCTCAAACAAACCCTCTTTTATTTCTACTTATCTGCCACTGTTTTTCGTTTGTGTTCATTTGATCTCATATATATAGCTACATTTTGGATTTCTCCAACTAATATCCATTCTATATTATTAAAAGGCAATGAGTCTTAAAACTTTTTTAGACTAAAATATCATTTTAAATTTTAGTTCGCCTTAAAATATCTTCTTTTTTTCTTTTTTCTTTTTTTTTTATCTCTGTGA

Coding sequence (CDS)

ATGCCTCCTGCTGGTCCTCGATCCGGCGACGCAATCTTCGCTAGCGTTGAGCGAGTGAATGCGGAGTTGTTTACCTTGACTTATGGAGCGACTGTTCGTCAATTGCTCACGGATCTGGAGGAGGTTGAGGAGGTCAACAAACAGCTCGATCAGATGGGCTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCTAATATTTCGAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTCGGGTTGAAAATGTTTTTGGGAGTGAATGCAACGGTGGCCAACTGGGATGCTGAAGGCACATGCTGCAGTATTGTTCTAGAAGACAATCCATTGGTAGACTTCGTTGAGCTGCCTGATACTTGTCAAGGTCTACATTACTGCAATATCTTAAGTGGAGTCATCAGAGGAGCACTTGAGATGGTTTCAGGTTCGAGACTCACATGTGACATTACTCCTTGGTTGTCTTTCGGTACCTGGCCTAGGGACGGGCGGGATTACCCTTATTTCAAAAAAAACACACAACCAACCTCCATGGGCAGCTTGGTGGTCAAAATGACAATATAA

Protein sequence

MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNILSGVIRGALEMVSGSRLTCDITPWLSFGTWPRDGRDYPYFKKNTQPTSMGSLVVKMTI

Homology

[Close]

BLAST of Sed0000628.3 vs. NCBI nr
Match: XP_022941300.1 (trafficking protein particle complex subunit 3-like [Cucurbita moschata])

HSP 1 Score: 298.9 bits (764), Expect = 3.2e-77
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATV NWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. NCBI nr
Match: XP_038896395.1 (trafficking protein particle complex subunit 3 [Benincasa hispida])

HSP 1 Score: 298.9 bits (764), Expect = 3.2e-77
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATV NWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. NCBI nr
Match: XP_022981618.1 (trafficking protein particle complex subunit 3-like [Cucurbita maxima])

HSP 1 Score: 298.5 bits (763), Expect = 4.1e-77
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATV NWDAEGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. NCBI nr
Match: XP_022139368.1 (trafficking protein particle complex subunit 3 [Momordica charantia])

HSP 1 Score: 297.4 bits (760), Expect = 9.2e-77
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATV NWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. NCBI nr
Match: KAG6607818.1 (Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.8 bits (756), Expect = 2.7e-76
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 48  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 107

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNA+V NWD EGTCCSIVLEDNPLVDF
Sbjct: 108 IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNASVTNWDTEGTCCSIVLEDNPLVDF 167

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 168 VELPDTCQGLHYCNILSGVIRGALEMVS 195

[Close]

BLAST of Sed0000628.3 vs. ExPASy Swiss-Prot
Match: Q86K94 (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=trappc3 PE=3 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 6.7e-46
Identity = 92/140 (65.71%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 9   GDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 68
           G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS
Sbjct: 9   GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68

Query: 69  NISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDFVELPDTCQ 128
            I RC DF ETA+VIAKVG KMFLGVNA V +WDA      + +EDNPL+DFVELPD  +
Sbjct: 69  GIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYK 128

Query: 129 -GLHYCNILSGVIRGALEMV 148
             L+Y NIL GV+RGALEMV
Sbjct: 129 HKLYYSNILCGVMRGALEMV 148

[Close]

BLAST of Sed0000628.3 vs. ExPASy Swiss-Prot
Match: Q5ZI57 (Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-43
Identity = 82/131 (62.60%), Postives = 104/131 (79.39%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETADVIAK+  KM+LG+  ++ NW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMV 148
            GV+RGALEMV
Sbjct: 132 CGVLRGALEMV 142

[Close]

BLAST of Sed0000628.3 vs. ExPASy Swiss-Prot
Match: O55013 (Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.3e-43
Identity = 82/131 (62.60%), Postives = 104/131 (79.39%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETADVIAKV  KM+LG+  ++ NW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMV 148
            GV+RGALEMV
Sbjct: 132 CGVLRGALEMV 142

[Close]

BLAST of Sed0000628.3 vs. ExPASy Swiss-Prot
Match: Q5U1Z2 (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.3e-43
Identity = 82/131 (62.60%), Postives = 104/131 (79.39%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETADVIAKV  KM+LG+  ++ NW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMV 148
            GV+RGALEMV
Sbjct: 132 CGVLRGALEMV 142

[Close]

BLAST of Sed0000628.3 vs. ExPASy Swiss-Prot
Match: O43617 (Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 81/131 (61.83%), Postives = 104/131 (79.39%), Query Frame = 0


Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SN+ RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  KETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNIL 136
           +ETADVIAKV  KM+LG+  ++ NW   G   S++LE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131

Query: 137 SGVIRGALEMV 148
            GV+RGALEMV
Sbjct: 132 CGVLRGALEMV 142

[Close]

BLAST of Sed0000628.3 vs. ExPASy TrEMBL
Match: A0A6J1FT71 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111446643 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.5e-77
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATV NWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. ExPASy TrEMBL
Match: A0A6J1J2K9 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111480683 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATV NWDAEGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. ExPASy TrEMBL
Match: A0A6J1CFG3 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111010320 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.4e-77
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETA+VIAKVGLKMFLGVNATV NWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETAEVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. ExPASy TrEMBL
Match: A0A5A7TX50 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00240 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATV NWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. ExPASy TrEMBL
Match: A0A0A0LAM3 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3G419290 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATV NWDAEGTCCSIVLEDNPLVDF
Sbjct: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGLHYCNILSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. TAIR 10
Match: AT5G54750.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 271.2 bits (692), Expect = 6.6e-73
Identity = 128/148 (86.49%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           M P GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  IDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTCCSIVLEDNPLVDF 120
           IDEFLAKS +SRCVDFKETA++IAKVG KMFLGV A+V +WD++GTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLHYCNILSGVIRGALEMVS 149
           VELPDTCQGL+YCN+LSGVIRGALEMVS
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVS 148

[Close]

BLAST of Sed0000628.3 vs. TAIR 10
Match: AT5G54750.2 (Transport protein particle (TRAPP) component )

HSP 1 Score: 261.9 bits (668), Expect = 4.0e-70
Identity = 128/161 (79.50%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQM-------- 60
           M P GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQM        
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMYSSSTIYV 60

Query: 61  -----GYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVANWDAEGTC 120
                GYNIGIRLIDEFLAKS +SRCVDFKETA++IAKVG KMFLGV A+V +WD++GTC
Sbjct: 61  DSLPWGYNIGIRLIDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTC 120

Query: 121 CSIVLEDNPLVDFVELPDTCQGLHYCNILSGVIRGALEMVS 149
           CSI+LEDNPLVDFVELPDTCQGL+YCN+LSGVIRGALEMVS
Sbjct: 121 CSIILEDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVS 161

The following BLAST results are available for this feature:

BLAST of Sed0000628.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941300.1	3.2e-77	99.32	trafficking protein particle complex subunit 3-like [Cucurbita moschata]	[more]
XP_038896395.1	3.2e-77	99.32	trafficking protein particle complex subunit 3 [Benincasa hispida]	[more]
XP_022981618.1	4.1e-77	98.65	trafficking protein particle complex subunit 3-like [Cucurbita maxima]	[more]
XP_022139368.1	9.2e-77	98.65	trafficking protein particle complex subunit 3 [Momordica charantia]	[more]
KAG6607818.1	2.7e-76	97.97	Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma ...	[more]

BLAST of Sed0000628.3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86K94	6.7e-46	65.71	Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44...	[more]
Q5ZI57	2.4e-43	62.60	Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPP...	[more]
O55013	5.3e-43	62.60	Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q5U1Z2	5.3e-43	62.60	Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=...	[more]
O43617	1.5e-42	61.83	Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of Sed0000628.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FT71	1.5e-77	99.32	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J2K9	2.0e-77	98.65	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CFG3	4.4e-77	98.65	Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5A7TX50	1.3e-76	98.65	Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0LAM3	1.3e-76	98.65	Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]

BLAST of Sed0000628.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54750.1	6.6e-73	86.49	Transport protein particle (TRAPP) component	[more]
AT5G54750.2	4.0e-70	79.50	Transport protein particle (TRAPP) component	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	GENE3D	3.30.1380.20	Trafficking protein particle complex subunit 3	coord: 4..158 e-value: 1.5E-71 score: 241.5
None	No IPR available	PANTHER	PTHR13048:SF5	PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED	coord: 1..148
IPR007194	Transport protein particle (TRAPP) component	PFAM	PF04051	TRAPP	coord: 24..150 e-value: 2.3E-31 score: 108.5
IPR016721	Bet3 family	PANTHER	PTHR13048	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3	coord: 1..148
IPR016721	Bet3 family	CDD	cd14942	TRAPPC3_bet3	coord: 20..147 e-value: 2.12565E-89 score: 257.054
IPR024096	NO signalling/Golgi transport ligand-binding domain superfamily	SUPERFAMILY	111126	Ligand-binding domain in the NO signalling and Golgi transport	coord: 18..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000628	Sed0000628	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000628.3-three_prime_utr	Sed0000628.3-three_prime_utr-LG04:42566901..42567369	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000628.3-exon	Sed0000628.3-exon-LG04:42566901..42567513	exon
Sed0000628.3-exon	Sed0000628.3-exon-LG04:42568110..42568292	exon
Sed0000628.3-exon	Sed0000628.3-exon-LG04:42570676..42570775	exon
Sed0000628.3-exon	Sed0000628.3-exon-LG04:42571822..42571919	exon
Sed0000628.3-exon	Sed0000628.3-exon-LG04:42572090..42572241	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000628.3-cds	Sed0000628.3-cds-LG04:42567370..42567513	CDS
Sed0000628.3-cds	Sed0000628.3-cds-LG04:42568110..42568292	CDS
Sed0000628.3-cds	Sed0000628.3-cds-LG04:42570676..42570775	CDS
Sed0000628.3-cds	Sed0000628.3-cds-LG04:42571822..42571919	CDS
Sed0000628.3-cds	Sed0000628.3-cds-LG04:42572090..42572146	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000628.3-five_prime_utr	Sed0000628.3-five_prime_utr-LG04:42572147..42572241	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000628.3	Sed0000628.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
cellular_component	GO:0030008	TRAPP complex
cellular_component	GO:0033106	cis-Golgi network membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005783	endoplasmic reticulum