Sed0000500.4 (mRNA) Chayote v1

Overview


Name	Sed0000500.4
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S1
Location	LG10: 33773193 .. 33779908 (-)
Sequence length	1624
RNA-Seq Expression	Sed0000500.4
Synteny	Sed0000500.4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATGCAACAATAGATCGCAGGTCTTAGTCTGGGAAACGCCGCTGAAGGAAGGCGAGGATGGCTTCAATGGCTCTGCAAAGCACAGTGTTGAAACGCACGGCTCAGTTTCCGATTCCGTATCGTCGCTCGAAGCCATTAGGTCTCCGGCGTAGGCAGAGCATGGCGAGTCCGTTCCCCATTGTCGCTGCAGTTATTTGTAGCCCTAATCCCACCTCTCAGGCCAGAGATCGGTTCAACCTCAAAGCCACCTTCGAGGACGCCGCCGATCGCTGCCGTAATGATCCCATGGAAGGCGTCTCCTTCACTCTCCATGATTTCCTTTCCGCTCTTGAGAAATACGACTTCGATTCTCAATTGGGAGCTAAGGTTTTTTCCGTTTCTGTTCTTGTTCTCTTGTGATTTACACCGTTATTCATTGTTTTGATCTTTCAAGGGTTTGGTATCTCTGTGTTATTTTTTATGGGAGTGTTGGGATTTTGGATGTTTTGTTTCGATTCTAAATTGTAGGTTTGATTGTTGAACTTTCCTGGCTGTGTCTATTTAGACTTTGATTCTTGAGTTTTTTTTTTTTATATTTTTGATGAAGTCTAGCTTAGTTTCTAATAATCTATTGAAATTTTAATTTTGTTTCTAACTATCGATCTAGAACTTCGTCAATTTGTTCTTGAAAAAAACAAAAAAATTTCGTCGATTTAACATTTGCCATTTAATATCTAAACTTTCCCGAAGTTGGCCTCCCATGTATTTCTCTAAGAATATAATCAGCATGCCGCATAAGCATGAAACTGTCCGGAGTTAATGATGGAGACTTATTAGACATTAAATTGAAAGTTTTTTTTTTTGACCGAACATTTAATTGAAAGTTAATTCTGTCCCAAGGTGTGGCATAAGTGGTTGAAAGCTTGTGCTATCTGCTCCTCCTGTGTCTCCATTGCTTCGGTGTCTCTCGGTGCCTGGGTACCTTGAGTATACTGGAGCAAAACTCCGATTTTCCGATTTTAAAAGAAAAAAAAATTGAAAGTTAATCCAATGGAGTAACTTAACAGTTAAAAGAGGTCTTTAATTACGAAGGAATAATGAGTTCAATTGATGGTGGTCACCTATCTAAGAACTACTTTACTATCAATTTCATTAATATTTAAATGTTGTAGGGTCAGATGGGTCAGATGATATGTCAACTAAGAATAGTCGAGCGGACACTTACGGATATAAAAGAACATTAAATTGAAAATTGAAAGATCTTATTAGAATCTCTTGTGGTTTATTATAAACTTTATAAGTACAATTTAATAGTTTAGGGATAAAAACAAAGTTTGATATTCGGTATGACCTAACATGTAATAAAGGCGAAGTGCTACTTTTGCATTTGAAGAATATGGTGTTGAAATTTGAACAGTGTCTCTTTACAGGTGAAAGGAACTGTGGTCCAAGTAGAAGCTAATGGAGCGCTGGTTGAGATTGCTACCAAGTCGCCTGCATACTTGCCATTGCAGGAGGCTTCCATTCATAGACTTAAACGTGTAGAAGAAGCAGGAATATATCCTGGTTTTAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGTTTGATTTTGAGCTTGAGGCCCATTCAATCTGACCTGGCTTGGGAGAGGTGTAGACAACTTCTAGCAGAGGATGTCGTTGTCAAGGGTAAGGTGGGCATTTCCAGACCAATTTTTCATTCTTTTGTTTGTTTGCGATAGTAGGCATGTTAGGGCGGGGTTAAATCACTTTTGAAAACGACCATCTTTTTATATAACTGGAAATGGGAACTTTGCCTCACACATATCCGGTGGCACCCATGCACCACGCCTGTCCCAAGGTTTGGACCCGGAGATAACAAAGCATTTTATATTTCTAAGAGATAACAAAAGATTTTACCATTGAGTTCACTCGTGGGTCTCAAACTTGGGATCTCCAAGAGTGCATACCTTGGAGATCCCGAGCCACTCTCAACGAGGTCGCCTCTTGGAGACTGAAAACAATAATTAAAAAGACGTCTAGTTGTATCACAATCTGTTTTAGATTTAAAATATTAAAGCTGTCCTCCCTAAAAATACTTATTTAAAACCACTTCCAATCATGTCCTACATCTTTTGTTCTCCCGAGATTGTTCATATGTGGTAATTTTCTGATGAAATATTCAGGTTGTTGATGCAAACAAAGGCGGAGTTTTGGTAGTCGTGGAAGGTCTAAAGGGGTTTGTGCCTTTCTCAGAGATATCAATGGTATTTTCTATAATCTCTTTAAAGACATTCTCTTTTGTTGGATACTAAAAGATAGACCTTTCTTTTATGTTTATTCTGGTTCAACGAATACAGATGTAAATATCTTTGAATCATTAGTATTTTTATAGTCTTCGTGATGTTAATTATATACTGCTAATTTACATTAATCCTCTTTTTATCATTTTTTTGTGCAATCATTTCAGGTAACAACTGCTGAAGAGATTCTCAACAAGGAACTTCCTGTGAAATTTCTAATTGTAAATGAGGAACTTACGAGGATTGTTCTCAGTAACCGCAAGGCCATGGCTGACAACCAGGCACAGCTTGAAATTGGATCAGTGGTCACTGGAACAGTTCGAAGACTTGAAAAGTTTGGTGCCTTTGTTGACCTTGGTGGAATCCATGGTCTTCTCCACATCAGTGAGACAAGTCATGATCGTATAGCAAACATTTTTGCAGTTCTAAAGCCTGGAGACATTCTCAAGGTAGTTTTCAACAACCTTCAAGTGATTAGTTATAGGCCTCTTACACTCATTTTGGCAAATTTTACAGTGAATTCCTCTGGCATAGGTCATGATTTTGAAACATGATCGTGAGAAAGGCCATATTCGTCTTTCTACCAAGAAGTTAGAGCCCAATCCTGGGGACATGATTCGCAATCCAAAGCTTGTTTATGAGAAGGTATTCTCTCTGTTAGCTAGAGTTATCTTTTCATGTCATTTTTTTTTGTATGGATGCTGCTTCGTTTTGTTCCTCGTGTTTGTACATGCTCGACAAACACTCATCGTATTTCACCTACTATGGCTACATTATGATGAATGCCATTATTTAAAGTGCAACTTTAACAATGGCTAGGACCTTATGGCTTGCTAGGATAAACTTCTCTATTGAGACTAGTTTTTCTTACCCTCCAACTCTTGTAGCTTGGTTTTTGTTCTTGTTTTTTTATAGAGTTTTGGTGGTTATATCTTGAATGCTGAAAGGAAAACATGGAGTGACATAGAGGAAGGCATGTGGAGTTATTTGGATATCGAAAGTAGTACATATTTTGGAAATTGAAAGAGAAATTTCATGTTGCACCTGTGTTTTGTATGACTATGGCCTTTTTTGGAGCTCACGTGATAGAAATTTTCTCTGTTTCTGTTGAGGAGCAAGAAGAAAACAGGTAGGAGTAAAATTTAATGCGTGGTTTTGTTACGATTGATAGGCTGAGGAAATGGCTCAAAGATTTAAGCGAAGAATAACTCAAGCAGGGGCACGTGCAGACTTGCTTAGTTTTCAGTCTCAGGTAATCTGACATCCATTTTATCTTTTACTAGAACTTTGGAACGTGCTTTGCACGGGAGATTTTTTCTGGCATGTGAGATTATATTTTTATTTATTAAAATACTTATATATATATATATAAATTTTAAATGAGTAAGTAAAATATTTATTATCTAATTTATTTAAAAATCTCATACAACGTAGTTCACGATAAAAGTGAAATAAAAAAAATATACATATCATAATTTTTAAAGAAAATTATGAAATAAATTAAACTTCTTTAAGATATAAGTTTTCGACATACTAAAATCTTACTTTGTACACAATATATTTCTTTTCATTCATTTATTATTTTAGTTTAATCTACGAACATCGAATCCATCTTTTCAAAAAAAAAAAAAACCTCGAAACCATCACCTCTCTAAAATCTTAAAAATCATATTTGTGCTTTCTTATTTCATCTTATATTTTATAAATAATAAAAAATAAAGAAAATATTGAAAAAAAAGATTAAAGAAACTCATAAAATCTATTATCTACCTCTTCTACGAATTTTGATGAAACATAAGTTTTTTAAATATTAATTTAAAACATAATATTATATTAAATTTATTCTTCTCTACAATAATAATAATGGTGTATATATTTATATTTAAATTAAAAAAATATATAATTAGTAAAATTGATAAAATTTAAGTAGCTTCGTATGTCAAAATATGAGTAGTACTTCAATGACATCACGTATTACAGAATAAGCAACAAATTACATGTTAAGTCATATTTTGTTATAATAACAAATAATAATAATAATATGAAAAAATAATAATTATAAAAAATTACCTTTCATTAATGGAAGAATGTGATAAACACTTCTTCAAAATTTTAAATACTCCATAAATTTAAAAGAAAATTATAAATTAAAGTTGAAGCATAAAATAAATAGAATTACACAAAGAAAACATAATAAAAATAAAAATAAATGAAGAAGAAGAAAATGTTATGGACAATGAATTAAATACGGATTGAAAAAATTGTTCTTTACCTTCGATTCGATGACAACCGCTCCCACGAACACAACTCAGTGCACCAATGCTAAGACTCCCAACCCGAACAAAATCTGTATATCTTTGCAACATCAAAAGAATTATTAGTAATTTGAATTTTGAAGAACAATAAATTAGAGGTATTTATAGAAAAAGTTGGAACTCAAGATCTTTATATTTGAAAAAAAAACTCAATATCTTCATTTGATTTTATACTTATTTAGTTTGAAGATACTAAATTTTAATAATTAATAATAATAATAATAAGTCACATTTTAAGTAGTAAAAATAAAAATAAAGAATATTACGCAGATTCTCTTATCTTCTAACTTAATTTATGAGATTTGCTAAAAATATATTATCTAAATATCTAAATAATCTAAATAATATTATAAATATATTTGTATTTTTTTTTTATATTTGAATAGAAGATTATGACGTGTTTGTAATTTAGGGTGTGGCTTAAGGATAAAATCGTCGAAAAATGATTTTCCTTTAAGCCACACTTTAAAGTAGTATGTAGTATAATATGTAGTATGATATTAAAGTAGTATGATATGATATGATGTGATATTTCTGAACTCTACACTGCCAATGAAGAAAAAATATTATGATAAATTAACTAAATGCCCAATTATGCAATTATGGGAGTGTAATTAATTTGATATTGATAGTTATATTATTGGCTGTGGCTGCATCTTTGACGGATGCAGTTTTTAGGTTGGTTCTAGCGGTTGAGTCGACAGAAGTTTAAACATTTTCTTCAAAAATATTTTTAATAACCAATTTGTTTTATTACACTAAGTCTACTAATAAAAAACATGTTTCTTTATTTCCTTTTCTAAAGTCACCTACGTTTTGGATAATCATCGTTGCAATGTTTCTAAAACAACCATCATCACATGAGTTGGTCTAATGAGCAAGAGAATTTTTTTTTTCTTTTGAAAACTGAGCAGGAGAATCTTAAAAAACTAAGAAGTGAAGGTTAAATTTATGATGATCATCTACTTAGGAATTAGTTTCCTCAGTTTCTTATGAAATTTTTAAAGATCCAAATGTTGTTGGTCAAATAGTTTGTTTCTTGAGAATAATTGATATGCATGATCCAAAATTGGATACAAAAAGATGTTTCTGAAATCAATGCTTTTAAATCAATATCTCTCCTTTTTTTTATCTTCTTCTTAAAATAGGTTGTTTTTTACTGCCAAACGTAAGAGATTTTTAAAAATGTCGTTTCACTCGTCTAAAATCATGTAAGAAGCTATTCAAAACTACATACTAAATTTGTAGAAAAAGTAGTTGATTTGAAAACACTGTCATCCCAAATTAAACTGAACCAACACTCTATCCTCTGTGTGTCAAATAGAAAGACAATGTATATTTTGGATGGGAAGAGATGTTATCATTGATTATGAAATGTTGATAGGTTTTAGGCCCTACTCTATGGTTGTGTAGTTGAATATTCTTTTTATATTTGACTAACTTAAGTGTTTATAAGTTATAACTAAACTAAGTGGCCTCAGTTGGAGATTGATGTTTCTATATTCCATTTTTTTTTTGAAAAAAGATGTTTCTATATTCCATTTGTTGTAGGAAAAAATAACTACATAATGTTGAAATGTTGTAGAGTTGGGTGTCGTCCATGTATGTATATATATATATATAGTCAAACAATATTTAGTTGTAACATTTGTCCAAATATTGAATTTTGCGACCAATCTACTTCTTAATGTGTATGAATTTGAACTTCAACCATGCCTTGTTTTGCAATGCCACAGGGTGGATTAACATTTAGTGATGGAATATTGGGACCATGTACCCCACAGTTGCCTTGAGGAGAGGAGATAGTTCAGCTAAAGAATGAAGACTCAGCTGGCTTTTTGCACGTTAATATACACATATTTGATGCATTATCCCAATACTTAACTAGAAAATAACAACAAAGATTAGGGTTTTTTTTCTTTTTTTTTGTTAAGTTCTGAAGTAGGGAGGCATTTTGAGAATTGAGGACTAAAATTATTTTCTTTAATTGATTTTTTTTTAATAAAGCATCCGGAAGTAAAATACAATGTTATCCAAGGTTAGAAACTAAAATAGAATAATGTTAAAAGTCTTAAGATTGTATCATCTTTTTTCCCTTTTTTTGAC

mRNA sequence

AATAAATGCAACAATAGATCGCAGGTCTTAGTCTGGGAAACGCCGCTGAAGGAAGGCGAGGATGGCTTCAATGGCTCTGCAAAGCACAGTGTTGAAACGCACGGCTCAGTTTCCGATTCCGTATCGTCGCTCGAAGCCATTAGGTCTCCGGCGTAGGCAGAGCATGGCGAGTCCGTTCCCCATTGTCGCTGCAGTTATTTGTAGCCCTAATCCCACCTCTCAGGCCAGAGATCGGTTCAACCTCAAAGCCACCTTCGAGGACGCCGCCGATCGCTGCCGTAATGATCCCATGGAAGGCGTCTCCTTCACTCTCCATGATTTCCTTTCCGCTCTTGAGAAATACGACTTCGATTCTCAATTGGGAGCTAAGGTGAAAGGAACTGTGGTCCAAGTAGAAGCTAATGGAGCGCTGGTTGAGATTGCTACCAAGTCGCCTGCATACTTGCCATTGCAGGAGGCTTCCATTCATAGACTTAAACGTGTAGAAGAAGCAGGAATATATCCTGGTTTTAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGTTTGATTTTGAGCTTGAGGCCCATTCAATCTGACCTGGCTTGGGAGAGGTGTAGACAACTTCTAGCAGAGGATGTCGTTGTCAAGGGTAAGGTTGTTGATGCAAACAAAGGCGGAGTTTTGGTAGTCGTGGAAGGTCTAAAGGGGTTTGTGCCTTTCTCAGAGATATCAATGGTAACAACTGCTGAAGAGATTCTCAACAAGGAACTTCCTGTGAAATTTCTAATTGTAAATGAGGAACTTACGAGGATTGTTCTCAGTAACCGCAAGGCCATGGCTGACAACCAGGCACAGCTTGAAATTGGATCAGTGGTCACTGGAACAGTTCGAAGACTTGAAAAGTTTGGTGCCTTTGTTGACCTTGGTGGAATCCATGGTCTTCTCCACATCAGTGAGACAAGTCATGATCGTATAGCAAACATTTTTGCAGTTCTAAAGCCTGGAGACATTCTCAAGGTCATGATTTTGAAACATGATCGTGAGAAAGGCCATATTCGTCTTTCTACCAAGAAGTTAGAGCCCAATCCTGGGGACATGATTCGCAATCCAAAGCTTGTTTATGAGAAGCAAGAAGAAAACAGGTAGGAGTAAAATTTAATGCGTGGTTTTGTTACGATTGATAGGCTGAGGAAATGGCTCAAAGATTTAAGCGAAGAATAACTCAAGCAGGGGCACGTGCAGACTTGCTTAGTTTTCAGTCTCAGGGTGGATTAACATTTAGTGATGGAATATTGGGACCATGTACCCCACAGTTGCCTTGAGGAGAGGAGATAGTTCAGCTAAAGAATGAAGACTCAGCTGGCTTTTTGCACGTTAATATACACATATTTGATGCATTATCCCAATACTTAACTAGAAAATAACAACAAAGATTAGGGTTTTTTTTCTTTTTTTTTGTTAAGTTCTGAAGTAGGGAGGCATTTTGAGAATTGAGGACTAAAATTATTTTCTTTAATTGATTTTTTTTTAATAAAGCATCCGGAAGTAAAATACAATGTTATCCAAGGTTAGAAACTAAAATAGAATAATGTTAAAAGTCTTAAGATTGTATCATCTTTTTTCCCTTTTTTTGAC

Coding sequence (CDS)

ATGGCTTCAATGGCTCTGCAAAGCACAGTGTTGAAACGCACGGCTCAGTTTCCGATTCCGTATCGTCGCTCGAAGCCATTAGGTCTCCGGCGTAGGCAGAGCATGGCGAGTCCGTTCCCCATTGTCGCTGCAGTTATTTGTAGCCCTAATCCCACCTCTCAGGCCAGAGATCGGTTCAACCTCAAAGCCACCTTCGAGGACGCCGCCGATCGCTGCCGTAATGATCCCATGGAAGGCGTCTCCTTCACTCTCCATGATTTCCTTTCCGCTCTTGAGAAATACGACTTCGATTCTCAATTGGGAGCTAAGGTGAAAGGAACTGTGGTCCAAGTAGAAGCTAATGGAGCGCTGGTTGAGATTGCTACCAAGTCGCCTGCATACTTGCCATTGCAGGAGGCTTCCATTCATAGACTTAAACGTGTAGAAGAAGCAGGAATATATCCTGGTTTTAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGTTTGATTTTGAGCTTGAGGCCCATTCAATCTGACCTGGCTTGGGAGAGGTGTAGACAACTTCTAGCAGAGGATGTCGTTGTCAAGGGTAAGGTTGTTGATGCAAACAAAGGCGGAGTTTTGGTAGTCGTGGAAGGTCTAAAGGGGTTTGTGCCTTTCTCAGAGATATCAATGGTAACAACTGCTGAAGAGATTCTCAACAAGGAACTTCCTGTGAAATTTCTAATTGTAAATGAGGAACTTACGAGGATTGTTCTCAGTAACCGCAAGGCCATGGCTGACAACCAGGCACAGCTTGAAATTGGATCAGTGGTCACTGGAACAGTTCGAAGACTTGAAAAGTTTGGTGCCTTTGTTGACCTTGGTGGAATCCATGGTCTTCTCCACATCAGTGAGACAAGTCATGATCGTATAGCAAACATTTTTGCAGTTCTAAAGCCTGGAGACATTCTCAAGGTCATGATTTTGAAACATGATCGTGAGAAAGGCCATATTCGTCTTTCTACCAAGAAGTTAGAGCCCAATCCTGGGGACATGATTCGCAATCCAAAGCTTGTTTATGAGAAGCAAGAAGAAAACAGGTAG

Protein sequence

MASMALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEENR

Homology

[Close]

BLAST of Sed0000500.4 vs. NCBI nr
Match: XP_038885297.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885298.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885299.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885300.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885301.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885302.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 505.0 bits (1299), Expect = 5.4e-139
Identity = 268/353 (75.92%), Postives = 293/353 (83.00%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSM-ASPFPIVAAVICSPNPTSQARDRFNLK 63
           MA Q T L+   +F I    SKPL     Q+M    FP+VAAVI  P PT Q  +RF LK
Sbjct: 1   MAQQCTGLRCEPRFSISSCLSKPLRPSHMQNMVVRSFPVVAAVISGPIPTPQTTERFKLK 60

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRCRN PMEGVSFTL DFL++LEKY FD QLGAKVKGTVV  EANGALVEIA 
Sbjct: 61  QTFNDAADRCRNAPMEGVSFTLQDFLASLEKYYFDPQLGAKVKGTVVYTEANGALVEIAA 120

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPL EA IHR+KRVEEAGIYPGFREEFVIIGENEDDSL LSLR IQ +LAWERCR
Sbjct: 121 KSPAYLPLPEACIHRIKRVEEAGIYPGFREEFVIIGENEDDSLTLSLRSIQYELAWERCR 180

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL AEDV+VKGKVV AN GGVLVVVEGLKGFVP+SEI M++TAEE++NKELP+KFL+VNE
Sbjct: 181 QLQAEDVIVKGKVVGANNGGVLVVVEGLKGFVPYSEILMISTAEELINKELPLKFLVVNE 240

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TRIVLSNRK MAD++AQL IG+VVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 241 EETRIVLSNRKIMADSKAQLAIGTVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 300

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           +I AVLKPGDILKVMIL  + EKGHIRLSTKKLEPN GDMI NP LV+EK EE
Sbjct: 301 DIAAVLKPGDILKVMILNINHEKGHIRLSTKKLEPNTGDMICNPGLVFEKAEE 353

[Close]

BLAST of Sed0000500.4 vs. NCBI nr
Match: XP_016902972.1 (PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis melo] >KAA0034974.1 30S ribosomal protein S1 [Cucumis melo var. makuwa] >TYK26997.1 30S ribosomal protein S1 [Cucumis melo var. makuwa])

HSP 1 Score: 504.2 bits (1297), Expect = 9.1e-139
Identity = 264/353 (74.79%), Postives = 294/353 (83.29%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMAS-PFPIVAAVICSPNPTSQARDRFNLK 63
           MA   T L+      I +  SKPLG  R+Q+ A+  F ++AAVI SP P+    +RF LK
Sbjct: 10  MAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKLK 69

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRC N PMEGVSFTL  FL++LEKYDFD QLG+KVKGTVV +EANGALVEIA 
Sbjct: 70  QTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIAA 129

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPLQEASIHR+KRVEEAGIYPGFREEFVIIG+NEDD L LSLRPIQ +LAWERCR
Sbjct: 130 KSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERCR 189

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL A DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEI M++T EE++NKELP+K L+V E
Sbjct: 190 QLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVEE 249

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TR+VLSNRK MAD++AQLEIGSVVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 250 EQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 309

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           +I  VLKPGDILKVM+L  DREKGHIRLSTKKLEPN GDMIRNP LV+ K EE
Sbjct: 310 DIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEE 362

[Close]

BLAST of Sed0000500.4 vs. NCBI nr
Match: XP_022138241.1 (30S ribosomal protein S1, chloroplastic [Momordica charantia])

HSP 1 Score: 473.0 bits (1216), Expect = 2.3e-129
Identity = 248/357 (69.47%), Postives = 292/357 (81.79%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R S P   R  Q+ A   P+ AAVI SP P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCA---PLSSSRLSTPFSPRHLQNKARSLPVHAAVISSPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FEDA +RCRN P+EG+SFTL DF +ALEKYDFDS++G KVKGTV   +ANGALV+
Sbjct: 61  KLKEVFEDAYERCRNAPVEGISFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDANGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLP+QEA IHR+K VEEAGI+PG REEFVIIGENE DDSL+LSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPVQEACIHRIKHVEEAGIFPGVREEFVIIGENEADDSLVLSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. NCBI nr
Match: XP_038878013.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 471.9 bits (1213), Expect = 5.0e-129
Identity = 248/357 (69.47%), Postives = 291/357 (81.51%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R SKP   R  QS A   P+ AAVI  P P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCV---PLSSSRLSKPFSSRHLQSKARSLPVQAAVISGPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG++FTL DF +ALEKYDFDS+LG KVKGTV   + NGALV+
Sbjct: 61  KLKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLP+QEA IHR+K VEEAGI+PG REEFVIIGENE DDSLILSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 DRISDIGTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. NCBI nr
Match: XP_008438974.1 (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 468.4 bits (1204), Expect = 5.6e-128
Identity = 246/357 (68.91%), Postives = 290/357 (81.23%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R SKP   +   + +   P+ AAVI  P P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCV---PLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG+SFTL DF +ALEKYDFDS+LG KVKGTV   + NGALV+
Sbjct: 61  KLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLPLQEA IHR+K VEEAGI+PG REEFVIIGENE DDSLILSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 3.4e-120
Identity = 220/317 (69.40%), Postives = 268/317 (84.54%), Query Frame = 0


Query: 40  PIVAAVICSPNPTSQARDRFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQ 99
           PIV+AV  S    +Q R+R  LK  FEDA +RCRN PMEGVSFT+ DF +AL+KYDF+S+
Sbjct: 38  PIVSAVAVS---NAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSE 97

Query: 100 LGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGE 159
           +G++VKGTV   +ANGALV+I  KS AYLPL EA I+R+K VEEAGI PG REEFVIIGE
Sbjct: 98  MGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGE 157

Query: 160 NE-DDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSE 219
           NE DDSLILSLR IQ +LAWERCRQL AEDVVVKGK+V ANKGGV+ +VEGL+GFVPFS+
Sbjct: 158 NEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQ 217

Query: 220 ISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKF 279
           IS  ++AEE+L KE+P+KF+ V+EE +R+V+SNRKAMAD+QAQL IGSVVTGTV+ L+ +
Sbjct: 218 ISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPY 277

Query: 280 GAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPN 339
           GAF+D+GGI+GLLH+S+ SHDR+++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP 
Sbjct: 278 GAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 337

Query: 340 PGDMIRNPKLVYEKQEE 356
           PGDMIRNPKLV+EK EE
Sbjct: 338 PGDMIRNPKLVFEKAEE 351

[Close]

BLAST of Sed0000500.4 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 6.2e-114
Identity = 217/359 (60.45%), Postives = 281/359 (78.27%), Query Frame = 0


Query: 1   MASMALQSTVLK---RTAQFPIPYRRSKPLGLRRRQSMASPFPIVAAVICSPNPTSQARD 60
           MAS+A Q + L+    ++   +  R SK    + + +  SP  IVAAV  S   + Q ++
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFP-QNKSASVSP-TIVAAVAMS---SGQTKE 60

Query: 61  RFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGAL 120
           R  LK  FEDA +RCR  PMEGV+FT+ DF +A+E+YDF+S++G +VKGTV + +ANGAL
Sbjct: 61  RLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGAL 120

Query: 121 VEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDL 180
           V+I+ KS AYL +++A IHR+K VEEAGI PG  EEFVIIGENE DDSL+LSLR IQ +L
Sbjct: 121 VDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYEL 180

Query: 181 AWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVK 240
           AWERCRQL AEDV+VK KV+ ANKGG++ +VEGL+GFVPFS+IS    AEE+L KE+P+K
Sbjct: 181 AWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLK 240

Query: 241 FLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISET 300
           F+ V+EE T++VLSNRKA+AD+QAQL IGSVV G V+ L+ +GAF+D+GGI+GLLH+S+ 
Sbjct: 241 FVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQI 300

Query: 301 SHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           SHDR+++I  VL+PGD LKVMIL HDR++G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 SHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 262.7 bits (670), Expect = 6.1e-69
Identity = 136/281 (48.40%), Postives = 189/281 (67.26%), Query Frame = 0


Query: 76  PMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASI 135
           P   + FT  DF + L++YD+    G  V GTV  +E  GAL++I  K+ A+LP+QE SI
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 136 HRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKV 195
           +R++  EE       RE F++  ENED  L LS+R I+   AWER RQL  ED  V+ +V
Sbjct: 67  NRVESPEEVLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEV 126

Query: 196 VDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAM 255
              N+GG LV +EGL+GF+P S IS     E+++ +ELP+KFL V+E+  R+VLS+R+A+
Sbjct: 127 FATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRAL 186

Query: 256 ADNQA-QLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDIL 315
            + +  +LE+G VV G VR ++ +GAF+D+GG+ GLLHISE SHD I    +V    D +
Sbjct: 187 VERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEV 246

Query: 316 KVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           KVMI+  D E+G I LSTK+LEP PGDM+RNP++VYEK EE
Sbjct: 247 KVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEE 287

[Close]

BLAST of Sed0000500.4 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.6e-64
Identity = 131/277 (47.29%), Postives = 183/277 (66.06%), Query Frame = 0


Query: 80  VSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLK 139
           + FTL DF + L+KYD+    G  V GTV  +E+ GAL++I  K+ AY+P+QE SI+R+ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 140 RVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDAN 199
             EE       RE F++  ENED  L LS+R I+   AWER RQL AED  V+  V   N
Sbjct: 70  DPEEVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATN 129

Query: 200 KGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQ 259
           +GG LV +EGL+GF+P S IS     E+++ ++LP+KFL V+EE  R+VLS+R+A+ + +
Sbjct: 130 RGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERK 189

Query: 260 AQ-LEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMI 319
              LE+  VV G+VR ++ +GAF+D+GG+ GLLHISE SHD I    +V    D +KVMI
Sbjct: 190 MNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMI 249

Query: 320 LKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           +  D E+G I LSTK+LEP PG M+++  LV E  +E
Sbjct: 250 IDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADE 286

[Close]

BLAST of Sed0000500.4 vs. ExPASy Swiss-Prot
Match: O33698 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.1e-41
Identity = 99/262 (37.79%), Postives = 153/262 (58.40%), Query Frame = 0


Query: 86  DFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLKRVEEAG 145
           DF  ALE    DSQ G  V+G V +   +GA ++I  K+PA+LP +EA++H +  + EA 
Sbjct: 13  DFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EAH 72

Query: 146 IYPGFREEFVII-GENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVL 205
           +      EF++I  +NED  + +SLR +  + AW R  +L      V+ KV  +NKGGV 
Sbjct: 73  LPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVT 132

Query: 206 VVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQA-QLE 265
             +EGL+ F+P S ++     + +  K L V FL VN    ++VLS R+A       ++E
Sbjct: 133 ADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIE 192

Query: 266 IGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDR 325
           +G ++ G V  L+ FG FVDLGG   LL I++ S   +A++ A+ K GD ++ +++  D 
Sbjct: 193 VGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDN 252

Query: 326 EKGHIRLSTKKLEPNPGDMIRN 346
            KG I LSTK LE +PG+++ N
Sbjct: 253 TKGRISLSTKVLENHPGEILEN 273

[Close]

BLAST of Sed0000500.4 vs. ExPASy TrEMBL
Match: A0A5A7SUN2 (30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00730 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 4.4e-139
Identity = 264/353 (74.79%), Postives = 294/353 (83.29%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMAS-PFPIVAAVICSPNPTSQARDRFNLK 63
           MA   T L+      I +  SKPLG  R+Q+ A+  F ++AAVI SP P+    +RF LK
Sbjct: 10  MAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKLK 69

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRC N PMEGVSFTL  FL++LEKYDFD QLG+KVKGTVV +EANGALVEIA 
Sbjct: 70  QTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIAA 129

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPLQEASIHR+KRVEEAGIYPGFREEFVIIG+NEDD L LSLRPIQ +LAWERCR
Sbjct: 130 KSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERCR 189

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL A DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEI M++T EE++NKELP+K L+V E
Sbjct: 190 QLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVEE 249

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TR+VLSNRK MAD++AQLEIGSVVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 250 EQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 309

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           +I  VLKPGDILKVM+L  DREKGHIRLSTKKLEPN GDMIRNP LV+ K EE
Sbjct: 310 DIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEE 362

[Close]

BLAST of Sed0000500.4 vs. ExPASy TrEMBL
Match: A0A1S4E424 (30S ribosomal protein S1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103501305 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 4.4e-139
Identity = 264/353 (74.79%), Postives = 294/353 (83.29%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMAS-PFPIVAAVICSPNPTSQARDRFNLK 63
           MA   T L+      I +  SKPLG  R+Q+ A+  F ++AAVI SP P+    +RF LK
Sbjct: 10  MAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKLK 69

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRC N PMEGVSFTL  FL++LEKYDFD QLG+KVKGTVV +EANGALVEIA 
Sbjct: 70  QTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIAA 129

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPLQEASIHR+KRVEEAGIYPGFREEFVIIG+NEDD L LSLRPIQ +LAWERCR
Sbjct: 130 KSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERCR 189

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL A DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEI M++T EE++NKELP+K L+V E
Sbjct: 190 QLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVEE 249

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TR+VLSNRK MAD++AQLEIGSVVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 250 EQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 309

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           +I  VLKPGDILKVM+L  DREKGHIRLSTKKLEPN GDMIRNP LV+ K EE
Sbjct: 310 DIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEE 362

[Close]

BLAST of Sed0000500.4 vs. ExPASy TrEMBL
Match: A0A6J1C966 (30S ribosomal protein S1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009464 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 1.1e-129
Identity = 248/357 (69.47%), Postives = 292/357 (81.79%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R S P   R  Q+ A   P+ AAVI SP P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCA---PLSSSRLSTPFSPRHLQNKARSLPVHAAVISSPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FEDA +RCRN P+EG+SFTL DF +ALEKYDFDS++G KVKGTV   +ANGALV+
Sbjct: 61  KLKEVFEDAYERCRNAPVEGISFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDANGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLP+QEA IHR+K VEEAGI+PG REEFVIIGENE DDSL+LSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPVQEACIHRIKHVEEAGIFPGVREEFVIIGENEADDSLVLSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. ExPASy TrEMBL
Match: A0A1S3AXL6 (30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.7e-128
Identity = 246/357 (68.91%), Postives = 290/357 (81.23%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R SKP   +   + +   P+ AAVI  P P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCV---PLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG+SFTL DF +ALEKYDFDS+LG KVKGTV   + NGALV+
Sbjct: 61  KLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLPLQEA IHR+K VEEAGI+PG REEFVIIGENE DDSLILSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. ExPASy TrEMBL
Match: A0A6J1F6H4 (30S ribosomal protein S1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442576 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 1.1e-126
Identity = 241/357 (67.51%), Postives = 290/357 (81.23%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q   L+     P+   R SKP   R  Q+ A   P+ AAVI SP P+ Q ++RF
Sbjct: 1   MASMAQQFNGLRCA---PLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG+SFT+ DF SA+EKYDF+S++G KVKGTV   +ANGALV+
Sbjct: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLPLQEA IHR+K VEEAGIYPG R+EFVIIGENE DDSL+LSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+L KE+P+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKA+AD+QAQL IGSVV GTV+ L+ +GAF+D+GG++GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 412.1 bits (1058), Expect = 4.4e-115
Identity = 217/359 (60.45%), Postives = 281/359 (78.27%), Query Frame = 0


Query: 1   MASMALQSTVLK---RTAQFPIPYRRSKPLGLRRRQSMASPFPIVAAVICSPNPTSQARD 60
           MAS+A Q + L+    ++   +  R SK    + + +  SP  IVAAV  S   + Q ++
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFP-QNKSASVSP-TIVAAVAMS---SGQTKE 60

Query: 61  RFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGAL 120
           R  LK  FEDA +RCR  PMEGV+FT+ DF +A+E+YDF+S++G +VKGTV + +ANGAL
Sbjct: 61  RLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGAL 120

Query: 121 VEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDL 180
           V+I+ KS AYL +++A IHR+K VEEAGI PG  EEFVIIGENE DDSL+LSLR IQ +L
Sbjct: 121 VDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYEL 180

Query: 181 AWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVK 240
           AWERCRQL AEDV+VK KV+ ANKGG++ +VEGL+GFVPFS+IS    AEE+L KE+P+K
Sbjct: 181 AWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLK 240

Query: 241 FLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISET 300
           F+ V+EE T++VLSNRKA+AD+QAQL IGSVV G V+ L+ +GAF+D+GGI+GLLH+S+ 
Sbjct: 241 FVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQI 300

Query: 301 SHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKQEE 356
           SHDR+++I  VL+PGD LKVMIL HDR++G + LSTKKLEP PGDMIRNPKLV+EK EE
Sbjct: 301 SHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEE 354

[Close]

BLAST of Sed0000500.4 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-18
Identity = 56/180 (31.11%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 178 WERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEE---------- 237
           W+  +         +G+V   N GG+L+    L GF+P+ ++S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 238 -ILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQ-LEIGSVVTGTVRRLEKFGAFVDL- 297
            ++  +LPVK +  +EE  +++LS + A+    +Q + +G V  G V  +E +GAF+ L 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 298 ---GGIH--GLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNP 340
              G  H  GL+H+SE S D + ++  VL+ GD ++V++   D+EK  I LS K+LE +P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]

BLAST of Sed0000500.4 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-16
Identity = 62/206 (30.10%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 156 IIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVP 215
           ++G       +LS R     +AW R RQ+   +  ++ K+ + N GG+L  +EGL+ F+P
Sbjct: 251 VLGRTLSGRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIP 310

Query: 216 FSE----ISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGT 275
             E    ++  T  +E + +   V+   +NE+   ++LS +  +A  +  L  G+++ GT
Sbjct: 311 KQELVKKVNTFTELKENVGRRFLVQITRLNEDKNDLILSEK--VAWEKLYLREGTLLEGT 370

Query: 276 VRRLEKFGAFVDLG--GIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIR 335
           V ++  +GA V LG     GLLHIS  +  RI ++  VL+  + +KV+++K       I 
Sbjct: 371 VVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKIS 430

Query: 336 LSTKKLEPNPGDMIRNPKLVYEKQEE 356
           LS   LE  PG  I + + V+ + EE
Sbjct: 431 LSIADLESEPGLFISDREKVFTEAEE 453

[Close]

BLAST of Sed0000500.4 vs. TAIR 10
Match: AT3G11964.1 (RNA binding;RNA binding )

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-11
Identity = 54/174 (31.03%), Postives = 85/174 (48.85%), Query Frame = 0


Query: 185  LAEDVVVKGKVVDA-NKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEE 244
            L+ D+ V+G V +  +KG  +++   ++  V  S +      E    KE PV  L+    
Sbjct: 1342 LSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEP--EKEFPVGKLVTGRV 1401

Query: 245  LTRIVLSNR--------------KAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLG--GI 304
            L    LS R              K+ + +  +L +G +++G +RR+E FG F+D+   G+
Sbjct: 1402 LNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGM 1461

Query: 305  HGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGD 342
             GL HIS+ S DR+ N+ A  K G+ ++  ILK D EK  I L  K      GD
Sbjct: 1462 VGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGD 1513

[Close]

BLAST of Sed0000500.4 vs. TAIR 10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative )

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-10
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 232 ELPVKFLIVNEELTRIVLSNRKAMADNQAQLE--------IGSVVTGTVRRLEKFGAFVD 291
           E   +  I N  LT IV  N+  M   Q Q++        +G V  GTV  ++++GAFV+
Sbjct: 638 ETGARLSIDNGTLT-IVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVE 697

Query: 292 L-GGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNP 340
             GG  GLLH+SE SH+ ++ +  VL  G  +  M ++ D  +G+I+LS K L P P
Sbjct: 698 FPGGQQGLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP 752

The following BLAST results are available for this feature:

BLAST of Sed0000500.4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885297.1	5.4e-139	75.92	30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885298.1...	[more]
XP_016902972.1	9.1e-139	74.79	PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis melo] >KAA00349...	[more]
XP_022138241.1	2.3e-129	69.47	30S ribosomal protein S1, chloroplastic [Momordica charantia]	[more]
XP_038878013.1	5.0e-129	69.47	30S ribosomal protein S1, chloroplastic-like [Benincasa hispida]	[more]
XP_008438974.1	5.6e-128	68.91	PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo]	[more]

BLAST of Sed0000500.4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29344	3.4e-120	69.40	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
Q93VC7	6.2e-114	60.45	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
P46228	6.1e-69	48.40	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
P73530	2.6e-64	47.29	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
O33698	9.1e-41	37.79	30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805...	[more]

BLAST of Sed0000500.4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUN2	4.4e-139	74.79	30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4E424	4.4e-139	74.79	30S ribosomal protein S1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1C966	1.1e-129	69.47	30S ribosomal protein S1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3AXL6	2.7e-128	68.91	30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 ...	[more]
A0A6J1F6H4	1.1e-126	67.51	30S ribosomal protein S1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0000500.4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30510.1	4.4e-115	60.45	ribosomal protein S1	[more]
AT3G23700.1	6.5e-18	31.11	Nucleic acid-binding proteins superfamily	[more]
AT1G71720.1	1.2e-16	30.10	Nucleic acid-binding proteins superfamily	[more]
AT3G11964.1	2.0e-11	31.03	RNA binding;RNA binding	[more]
AT5G14580.1	2.9e-10	36.75	polyribonucleotide nucleotidyltransferase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 263..333 e-value: 2.1E-25 score: 100.4 coord: 99..170 e-value: 3.4E-6 score: 36.6 coord: 186..252 e-value: 1.1E-5 score: 34.9
None	No IPR available	GENE3D	2.40.50.140		coord: 85..180 e-value: 6.8E-9 score: 37.4
None	No IPR available	GENE3D	2.40.50.140		coord: 259..338 e-value: 2.9E-23 score: 83.6
None	No IPR available	GENE3D	2.40.50.140		coord: 181..258 e-value: 5.7E-8 score: 34.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 333..357
None	No IPR available	PANTHER	PTHR10724	30S RIBOSOMAL PROTEIN S1	coord: 50..355
None	No IPR available	PANTHER	PTHR10724:SF11	30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC	coord: 50..355
None	No IPR available	CDD	cd04465	S1_RPS1_repeat_ec2_hs2	coord: 199..252 e-value: 9.48419E-13 score: 60.5504
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 100..170 e-value: 8.5E-6 score: 26.0 coord: 262..333 e-value: 9.0E-17 score: 61.2 coord: 187..250 e-value: 9.2E-8 score: 32.3
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 188..252 score: 13.609037
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 265..333 score: 20.808588
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 101..170 score: 13.046572
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 96..196
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 183..256
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 259..339

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000500	Sed0000500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000500.4-exon	Sed0000500.4-exon-LG10:33773193..33773562	exon
Sed0000500.4-exon	Sed0000500.4-exon-LG10:33776362..33776498	exon
Sed0000500.4-exon	Sed0000500.4-exon-LG10:33776969..33777079	exon
Sed0000500.4-exon	Sed0000500.4-exon-LG10:33777165..33777446	exon
Sed0000500.4-exon	Sed0000500.4-exon-LG10:33777650..33777730	exon
Sed0000500.4-exon	Sed0000500.4-exon-LG10:33778223..33778495	exon
Sed0000500.4-exon	Sed0000500.4-exon-LG10:33779539..33779908	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000500.4-three_prime_utr	Sed0000500.4-three_prime_utr-LG10:33773193..33773562	three_prime_UTR
Sed0000500.4-three_prime_utr	Sed0000500.4-three_prime_utr-LG10:33776362..33776480	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000500.4-cds	Sed0000500.4-cds-LG10:33776481..33776498	CDS
Sed0000500.4-cds	Sed0000500.4-cds-LG10:33776969..33777079	CDS
Sed0000500.4-cds	Sed0000500.4-cds-LG10:33777165..33777446	CDS
Sed0000500.4-cds	Sed0000500.4-cds-LG10:33777650..33777730	CDS
Sed0000500.4-cds	Sed0000500.4-cds-LG10:33778223..33778495	CDS
Sed0000500.4-cds	Sed0000500.4-cds-LG10:33779539..33779847	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000500.4-five_prime_utr	Sed0000500.4-five_prime_utr-LG10:33779848..33779908	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000500.4	Sed0000500.4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome