Sed0000500 (gene) Chayote v1

Overview


Name	Sed0000500
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S1
Location	LG10: 33773193 .. 33779908 (-)
RNA-Seq Expression	Sed0000500
Synteny	Sed0000500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATGCAACAATAGATCGCAGGTCTTAGTCTGGGAAACGCCGCTGAAGGAAGGCGAGGATGGCTTCAATGGCTCTGCAAAGCACAGTGTTGAAACGCACGGCTCAGTTTCCGATTCCGTATCGTCGCTCGAAGCCATTAGGTCTCCGGCGTAGGCAGAGCATGGCGAGTCCGTTCCCCATTGTCGCTGCAGTTATTTGTAGCCCTAATCCCACCTCTCAGGCCAGAGATCGGTTCAACCTCAAAGCCACCTTCGAGGACGCCGCCGATCGCTGCCGTAATGATCCCATGGAAGGCGTCTCCTTCACTCTCCATGATTTCCTTTCCGCTCTTGAGAAATACGACTTCGATTCTCAATTGGGAGCTAAGGTTTTTTCCGTTTCTGTTCTTGTTCTCTTGTGATTTACACCGTTATTCATTGTTTTGATCTTTCAAGGGTTTGGTATCTCTGTGTTATTTTTTATGGGAGTGTTGGGATTTTGGATGTTTTGTTTCGATTCTAAATTGTAGGTTTGATTGTTGAACTTTCCTGGCTGTGTCTATTTAGACTTTGATTCTTGAGTTTTTTTTTTTTATATTTTTGATGAAGTCTAGCTTAGTTTCTAATAATCTATTGAAATTTTAATTTTGTTTCTAACTATCGATCTAGAACTTCGTCAATTTGTTCTTGAAAAAAACAAAAAAATTTCGTCGATTTAACATTTGCCATTTAATATCTAAACTTTCCCGAAGTTGGCCTCCCATGTATTTCTCTAAGAATATAATCAGCATGCCGCATAAGCATGAAACTGTCCGGAGTTAATGATGGAGACTTATTAGACATTAAATTGAAAGTTTTTTTTTTTGACCGAACATTTAATTGAAAGTTAATTCTGTCCCAAGGTGTGGCATAAGTGGTTGAAAGCTTGTGCTATCTGCTCCTCCTGTGTCTCCATTGCTTCGGTGTCTCTCGGTGCCTGGGTACCTTGAGTATACTGGAGCAAAACTCCGATTTTCCGATTTTAAAAGAAAAAAAAATTGAAAGTTAATCCAATGGAGTAACTTAACAGTTAAAAGAGGTCTTTAATTACGAAGGAATAATGAGTTCAATTGATGGTGGTCACCTATCTAAGAACTACTTTACTATCAATTTCATTAATATTTAAATGTTGTAGGGTCAGATGGGTCAGATGATATGTCAACTAAGAATAGTCGAGCGGACACTTACGGATATAAAAGAACATTAAATTGAAAATTGAAAGATCTTATTAGAATCTCTTGTGGTTTATTATAAACTTTATAAGTACAATTTAATAGTTTAGGGATAAAAACAAAGTTTGATATTCGGTATGACCTAACATGTAATAAAGGCGAAGTGCTACTTTTGCATTTGAAGAATATGGTGTTGAAATTTGAACAGTGTCTCTTTACAGGTGAAAGGAACTGTGGTCCAAGTAGAAGCTAATGGAGCGCTGGTTGAGATTGCTACCAAGTCGCCTGCATACTTGCCATTGCAGGAGGCTTCCATTCATAGACTTAAACGTGTAGAAGAAGCAGGAATATATCCTGGTTTTAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGTTTGATTTTGAGCTTGAGGCCCATTCAATCTGACCTGGCTTGGGAGAGGTGTAGACAACTTCTAGCAGAGGATGTCGTTGTCAAGGGTAAGGTGGGCATTTCCAGACCAATTTTTCATTCTTTTGTTTGTTTGCGATAGTAGGCATGTTAGGGCGGGGTTAAATCACTTTTGAAAACGACCATCTTTTTATATAACTGGAAATGGGAACTTTGCCTCACACATATCCGGTGGCACCCATGCACCACGCCTGTCCCAAGGTTTGGACCCGGAGATAACAAAGCATTTTATATTTCTAAGAGATAACAAAAGATTTTACCATTGAGTTCACTCGTGGGTCTCAAACTTGGGATCTCCAAGAGTGCATACCTTGGAGATCCCGAGCCACTCTCAACGAGGTCGCCTCTTGGAGACTGAAAACAATAATTAAAAAGACGTCTAGTTGTATCACAATCTGTTTTAGATTTAAAATATTAAAGCTGTCCTCCCTAAAAATACTTATTTAAAACCACTTCCAATCATGTCCTACATCTTTTGTTCTCCCGAGATTGTTCATATGTGGTAATTTTCTGATGAAATATTCAGGTTGTTGATGCAAACAAAGGCGGAGTTTTGGTAGTCGTGGAAGGTCTAAAGGGGTTTGTGCCTTTCTCAGAGATATCAATGGTATTTTCTATAATCTCTTTAAAGACATTCTCTTTTGTTGGATACTAAAAGATAGACCTTTCTTTTATGTTTATTCTGGTTCAACGAATACAGATGTAAATATCTTTGAATCATTAGTATTTTTATAGTCTTCGTGATGTTAATTATATACTGCTAATTTACATTAATCCTCTTTTTATCATTTTTTTGTGCAATCATTTCAGGTAACAACTGCTGAAGAGATTCTCAACAAGGAACTTCCTGTGAAATTTCTAATTGTAAATGAGGAACTTACGAGGATTGTTCTCAGTAACCGCAAGGCCATGGCTGACAACCAGGCACAGCTTGAAATTGGATCAGTGGTCACTGGAACAGTTCGAAGACTTGAAAAGTTTGGTGCCTTTGTTGACCTTGGTGGAATCCATGGTCTTCTCCACATCAGTGAGACAAGTCATGATCGTATAGCAAACATTTTTGCAGTTCTAAAGCCTGGAGACATTCTCAAGGTAGTTTTCAACAACCTTCAAGTGATTAGTTATAGGCCTCTTACACTCATTTTGGCAAATTTTACAGTGAATTCCTCTGGCATAGGTCATGATTTTGAAACATGATCGTGAGAAAGGCCATATTCGTCTTTCTACCAAGAAGTTAGAGCCCAATCCTGGGGACATGATTCGCAATCCAAAGCTTGTTTATGAGAAGGTATTCTCTCTGTTAGCTAGAGTTATCTTTTCATGTCATTTTTTTTTGTATGGATGCTGCTTCGTTTTGTTCCTCGTGTTTGTACATGCTCGACAAACACTCATCGTATTTCACCTACTATGGCTACATTATGATGAATGCCATTATTTAAAGTGCAACTTTAACAATGGCTAGGACCTTATGGCTTGCTAGGATAAACTTCTCTATTGAGACTAGTTTTTCTTACCCTCCAACTCTTGTAGCTTGGTTTTTGTTCTTGTTTTTTTATAGAGTTTTGGTGGTTATATCTTGAATGCTGAAAGGAAAACATGGAGTGACATAGAGGAAGGCATGTGGAGTTATTTGGATATCGAAAGTAGTACATATTTTGGAAATTGAAAGAGAAATTTCATGTTGCACCTGTGTTTTGTATGACTATGGCCTTTTTTGGAGCTCACGTGATAGAAATTTTCTCTGTTTCTGTTGAGGAGCAAGAAGAAAACAGGTAGGAGTAAAATTTAATGCGTGGTTTTGTTACGATTGATAGGCTGAGGAAATGGCTCAAAGATTTAAGCGAAGAATAACTCAAGCAGGGGCACGTGCAGACTTGCTTAGTTTTCAGTCTCAGGTAATCTGACATCCATTTTATCTTTTACTAGAACTTTGGAACGTGCTTTGCACGGGAGATTTTTTCTGGCATGTGAGATTATATTTTTATTTATTAAAATACTTATATATATATATATAAATTTTAAATGAGTAAGTAAAATATTTATTATCTAATTTATTTAAAAATCTCATACAACGTAGTTCACGATAAAAGTGAAATAAAAAAAATATACATATCATAATTTTTAAAGAAAATTATGAAATAAATTAAACTTCTTTAAGATATAAGTTTTCGACATACTAAAATCTTACTTTGTACACAATATATTTCTTTTCATTCATTTATTATTTTAGTTTAATCTACGAACATCGAATCCATCTTTTCAAAAAAAAAAAAAACCTCGAAACCATCACCTCTCTAAAATCTTAAAAATCATATTTGTGCTTTCTTATTTCATCTTATATTTTATAAATAATAAAAAATAAAGAAAATATTGAAAAAAAAGATTAAAGAAACTCATAAAATCTATTATCTACCTCTTCTACGAATTTTGATGAAACATAAGTTTTTTAAATATTAATTTAAAACATAATATTATATTAAATTTATTCTTCTCTACAATAATAATAATGGTGTATATATTTATATTTAAATTAAAAAAATATATAATTAGTAAAATTGATAAAATTTAAGTAGCTTCGTATGTCAAAATATGAGTAGTACTTCAATGACATCACGTATTACAGAATAAGCAACAAATTACATGTTAAGTCATATTTTGTTATAATAACAAATAATAATAATAATATGAAAAAATAATAATTATAAAAAATTACCTTTCATTAATGGAAGAATGTGATAAACACTTCTTCAAAATTTTAAATACTCCATAAATTTAAAAGAAAATTATAAATTAAAGTTGAAGCATAAAATAAATAGAATTACACAAAGAAAACATAATAAAAATAAAAATAAATGAAGAAGAAGAAAATGTTATGGACAATGAATTAAATACGGATTGAAAAAATTGTTCTTTACCTTCGATTCGATGACAACCGCTCCCACGAACACAACTCAGTGCACCAATGCTAAGACTCCCAACCCGAACAAAATCTGTATATCTTTGCAACATCAAAAGAATTATTAGTAATTTGAATTTTGAAGAACAATAAATTAGAGGTATTTATAGAAAAAGTTGGAACTCAAGATCTTTATATTTGAAAAAAAAACTCAATATCTTCATTTGATTTTATACTTATTTAGTTTGAAGATACTAAATTTTAATAATTAATAATAATAATAATAAGTCACATTTTAAGTAGTAAAAATAAAAATAAAGAATATTACGCAGATTCTCTTATCTTCTAACTTAATTTATGAGATTTGCTAAAAATATATTATCTAAATATCTAAATAATCTAAATAATATTATAAATATATTTGTATTTTTTTTTTATATTTGAATAGAAGATTATGACGTGTTTGTAATTTAGGGTGTGGCTTAAGGATAAAATCGTCGAAAAATGATTTTCCTTTAAGCCACACTTTAAAGTAGTATGTAGTATAATATGTAGTATGATATTAAAGTAGTATGATATGATATGATGTGATATTTCTGAACTCTACACTGCCAATGAAGAAAAAATATTATGATAAATTAACTAAATGCCCAATTATGCAATTATGGGAGTGTAATTAATTTGATATTGATAGTTATATTATTGGCTGTGGCTGCATCTTTGACGGATGCAGTTTTTAGGTTGGTTCTAGCGGTTGAGTCGACAGAAGTTTAAACATTTTCTTCAAAAATATTTTTAATAACCAATTTGTTTTATTACACTAAGTCTACTAATAAAAAACATGTTTCTTTATTTCCTTTTCTAAAGTCACCTACGTTTTGGATAATCATCGTTGCAATGTTTCTAAAACAACCATCATCACATGAGTTGGTCTAATGAGCAAGAGAATTTTTTTTTTCTTTTGAAAACTGAGCAGGAGAATCTTAAAAAACTAAGAAGTGAAGGTTAAATTTATGATGATCATCTACTTAGGAATTAGTTTCCTCAGTTTCTTATGAAATTTTTAAAGATCCAAATGTTGTTGGTCAAATAGTTTGTTTCTTGAGAATAATTGATATGCATGATCCAAAATTGGATACAAAAAGATGTTTCTGAAATCAATGCTTTTAAATCAATATCTCTCCTTTTTTTTATCTTCTTCTTAAAATAGGTTGTTTTTTACTGCCAAACGTAAGAGATTTTTAAAAATGTCGTTTCACTCGTCTAAAATCATGTAAGAAGCTATTCAAAACTACATACTAAATTTGTAGAAAAAGTAGTTGATTTGAAAACACTGTCATCCCAAATTAAACTGAACCAACACTCTATCCTCTGTGTGTCAAATAGAAAGACAATGTATATTTTGGATGGGAAGAGATGTTATCATTGATTATGAAATGTTGATAGGTTTTAGGCCCTACTCTATGGTTGTGTAGTTGAATATTCTTTTTATATTTGACTAACTTAAGTGTTTATAAGTTATAACTAAACTAAGTGGCCTCAGTTGGAGATTGATGTTTCTATATTCCATTTTTTTTTTGAAAAAAGATGTTTCTATATTCCATTTGTTGTAGGAAAAAATAACTACATAATGTTGAAATGTTGTAGAGTTGGGTGTCGTCCATGTATGTATATATATATATATAGTCAAACAATATTTAGTTGTAACATTTGTCCAAATATTGAATTTTGCGACCAATCTACTTCTTAATGTGTATGAATTTGAACTTCAACCATGCCTTGTTTTGCAATGCCACAGGGTGGATTAACATTTAGTGATGGAATATTGGGACCATGTACCCCACAGTTGCCTTGAGGAGAGGAGATAGTTCAGCTAAAGAATGAAGACTCAGCTGGCTTTTTGCACGTTAATATACACATATTTGATGCATTATCCCAATACTTAACTAGAAAATAACAACAAAGATTAGGGTTTTTTTTCTTTTTTTTTGTTAAGTTCTGAAGTAGGGAGGCATTTTGAGAATTGAGGACTAAAATTATTTTCTTTAATTGATTTTTTTTTAATAAAGCATCCGGAAGTAAAATACAATGTTATCCAAGGTTAGAAACTAAAATAGAATAATGTTAAAAGTCTTAAGATTGTATCATCTTTTTTCCCTTTTTTTGAC

mRNA sequence

AATAAATGCAACAATAGATCGCAGGTCTTAGTCTGGGAAACGCCGCTGAAGGAAGGCGAGGATGGCTTCAATGGCTCTGCAAAGCACAGTGTTGAAACGCACGGCTCAGTTTCCGATTCCGTATCGTCGCTCGAAGCCATTAGGTCTCCGGCGTAGGCAGAGCATGGCGAGTCCGTTCCCCATTGTCGCTGCAGTTATTTGTAGCCCTAATCCCACCTCTCAGGCCAGAGATCGGTTCAACCTCAAAGCCACCTTCGAGGACGCCGCCGATCGCTGCCGTAATGATCCCATGGAAGGCGTCTCCTTCACTCTCCATGATTTCCTTTCCGCTCTTGAGAAATACGACTTCGATTCTCAATTGGGAGCTAAGGTGAAAGGAACTGTGGTCCAAGTAGAAGCTAATGGAGCGCTGGTTGAGATTGCTACCAAGTCGCCTGCATACTTGCCATTGCAGGAGGCTTCCATTCATAGACTTAAACGTGTAGAAGAAGCAGGAATATATCCTGGTTTTAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGTTTGATTTTGAGCTTGAGGCCCATTCAATCTGACCTGGCTTGGGAGAGGTGTAGACAACTTCTAGCAGAGGATGTCGTTGTCAAGGGTAAGGTTGTTGATGCAAACAAAGGCGGAGTTTTGGTAGTCGTGGAAGGTCTAAAGGGGTTTGTGCCTTTCTCAGAGATATCAATGGTAACAACTGCTGAAGAGATTCTCAACAAGGAACTTCCTGTGAAATTTCTAATTGTAAATGAGGAACTTACGAGGATTGTTCTCAGTAACCGCAAGGCCATGGCTGACAACCAGGCACAGCTTGAAATTGGATCAGTGGTCACTGGAACAGTTCGAAGACTTGAAAAGTTTGGTGCCTTTGTTGACCTTGGTGGAATCCATGGTCTTCTCCACATCAGTGAGACAAGTCATGATCGTATAGCAAACATTTTTGCAGTTCTAAAGCCTGGAGACATTCTCAAGGTCATGATTTTGAAACATGATCGTGAGAAAGGCCATATTCGTCTTTCTACCAAGAAGTTAGAGCCCAATCCTGGGGACATGATTCGCAATCCAAAGCTTGTTTATGAGAAGGCTGAGGAAATGGCTCAAAGATTTAAGCGAAGAATAACTCAAGCAGGGGCACGTGCAGACTTGCTTAGTTTTCAGTCTCAGGGTGGATTAACATTTAGTGATGGAATATTGGGACCATGTACCCCACAGTTGCCTTGAGGAGAGGAGATAGTTCAGCTAAAGAATGAAGACTCAGCTGGCTTTTTGCACGTTAATATACACATATTTGATGCATTATCCCAATACTTAACTAGAAAATAACAACAAAGATTAGGGTTTTTTTTCTTTTTTTTTGTTAAGTTCTGAAGTAGGGAGGCATTTTGAGAATTGAGGACTAAAATTATTTTCTTTAATTGATTTTTTTTTAATAAAGCATCCGGAAGTAAAATACAATGTTATCCAAGGTTAGAAACTAAAATAGAATAATGTTAAAAGTCTTAAGATTGTATCATCTTTTTTCCCTTTTTTTGAC

Coding sequence (CDS)

ATGGCTTCAATGGCTCTGCAAAGCACAGTGTTGAAACGCACGGCTCAGTTTCCGATTCCGTATCGTCGCTCGAAGCCATTAGGTCTCCGGCGTAGGCAGAGCATGGCGAGTCCGTTCCCCATTGTCGCTGCAGTTATTTGTAGCCCTAATCCCACCTCTCAGGCCAGAGATCGGTTCAACCTCAAAGCCACCTTCGAGGACGCCGCCGATCGCTGCCGTAATGATCCCATGGAAGGCGTCTCCTTCACTCTCCATGATTTCCTTTCCGCTCTTGAGAAATACGACTTCGATTCTCAATTGGGAGCTAAGGTGAAAGGAACTGTGGTCCAAGTAGAAGCTAATGGAGCGCTGGTTGAGATTGCTACCAAGTCGCCTGCATACTTGCCATTGCAGGAGGCTTCCATTCATAGACTTAAACGTGTAGAAGAAGCAGGAATATATCCTGGTTTTAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATAGTTTGATTTTGAGCTTGAGGCCCATTCAATCTGACCTGGCTTGGGAGAGGTGTAGACAACTTCTAGCAGAGGATGTCGTTGTCAAGGGTAAGGTTGTTGATGCAAACAAAGGCGGAGTTTTGGTAGTCGTGGAAGGTCTAAAGGGGTTTGTGCCTTTCTCAGAGATATCAATGGTAACAACTGCTGAAGAGATTCTCAACAAGGAACTTCCTGTGAAATTTCTAATTGTAAATGAGGAACTTACGAGGATTGTTCTCAGTAACCGCAAGGCCATGGCTGACAACCAGGCACAGCTTGAAATTGGATCAGTGGTCACTGGAACAGTTCGAAGACTTGAAAAGTTTGGTGCCTTTGTTGACCTTGGTGGAATCCATGGTCTTCTCCACATCAGTGAGACAAGTCATGATCGTATAGCAAACATTTTTGCAGTTCTAAAGCCTGGAGACATTCTCAAGGTCATGATTTTGAAACATGATCGTGAGAAAGGCCATATTCGTCTTTCTACCAAGAAGTTAGAGCCCAATCCTGGGGACATGATTCGCAATCCAAAGCTTGTTTATGAGAAGGCTGAGGAAATGGCTCAAAGATTTAAGCGAAGAATAACTCAAGCAGGGGCACGTGCAGACTTGCTTAGTTTTCAGTCTCAGGGTGGATTAACATTTAGTGATGGAATATTGGGACCATGTACCCCACAGTTGCCTTGA

Protein sequence

MASMALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKRRITQAGARADLLSFQSQGGLTFSDGILGPCTPQLP

Homology

[Close]

BLAST of Sed0000500 vs. NCBI nr
Match: XP_038885297.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885298.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885299.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885300.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885301.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885302.1 30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 550.4 bits (1417), Expect = 1.2e-152
Identity = 296/397 (74.56%), Postives = 326/397 (82.12%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSM-ASPFPIVAAVICSPNPTSQARDRFNLK 63
           MA Q T L+   +F I    SKPL     Q+M    FP+VAAVI  P PT Q  +RF LK
Sbjct: 1   MAQQCTGLRCEPRFSISSCLSKPLRPSHMQNMVVRSFPVVAAVISGPIPTPQTTERFKLK 60

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRCRN PMEGVSFTL DFL++LEKY FD QLGAKVKGTVV  EANGALVEIA 
Sbjct: 61  QTFNDAADRCRNAPMEGVSFTLQDFLASLEKYYFDPQLGAKVKGTVVYTEANGALVEIAA 120

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPL EA IHR+KRVEEAGIYPGFREEFVIIGENEDDSL LSLR IQ +LAWERCR
Sbjct: 121 KSPAYLPLPEACIHRIKRVEEAGIYPGFREEFVIIGENEDDSLTLSLRSIQYELAWERCR 180

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL AEDV+VKGKVV AN GGVLVVVEGLKGFVP+SEI M++TAEE++NKELP+KFL+VNE
Sbjct: 181 QLQAEDVIVKGKVVGANNGGVLVVVEGLKGFVPYSEILMISTAEELINKELPLKFLVVNE 240

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TRIVLSNRK MAD++AQL IG+VVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 241 EETRIVLSNRKIMADSKAQLAIGTVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 300

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKR 363
           +I AVLKPGDILKVMIL  + EKGHIRLSTKKLEPN GDMI NP LV+EKAEEMA RF++
Sbjct: 301 DIAAVLKPGDILKVMILNINHEKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHRFRQ 360

Query: 364 RITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQL 397
           R+ QA   ARADLLSFQ +G L   SDGIL P TP+L
Sbjct: 361 RLAQAEALARADLLSFQPEGRLNLSSDGILSPITPEL 397

[Close]

BLAST of Sed0000500 vs. NCBI nr
Match: XP_022138241.1 (30S ribosomal protein S1, chloroplastic [Momordica charantia])

HSP 1 Score: 522.7 bits (1345), Expect = 2.8e-144
Identity = 277/402 (68.91%), Postives = 327/402 (81.34%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R S P   R  Q+ A   P+ AAVI SP P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCA---PLSSSRLSTPFSPRHLQNKARSLPVHAAVISSPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FEDA +RCRN P+EG+SFTL DF +ALEKYDFDS++G KVKGTV   +ANGALV+
Sbjct: 61  KLKEVFEDAYERCRNAPVEGISFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDANGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLP+QEA IHR+K VEEAGI+PG REEFVIIGENE DDSL+LSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPVQEACIHRIKHVEEAGIFPGVREEFVIIGENEADDSLVLSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQ 360
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EKAEEMAQ
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 RFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
            F++RI QA   ARAD+L FQ + GLT  +DGILGP TP+LP
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELP 399

[Close]

BLAST of Sed0000500 vs. NCBI nr
Match: XP_016902972.1 (PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis melo] >KAA0034974.1 30S ribosomal protein S1 [Cucumis melo var. makuwa] >TYK26997.1 30S ribosomal protein S1 [Cucumis melo var. makuwa])

HSP 1 Score: 521.5 bits (1342), Expect = 6.2e-144
Identity = 272/365 (74.52%), Postives = 306/365 (83.84%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMAS-PFPIVAAVICSPNPTSQARDRFNLK 63
           MA   T L+      I +  SKPLG  R+Q+ A+  F ++AAVI SP P+    +RF LK
Sbjct: 10  MAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKLK 69

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRC N PMEGVSFTL  FL++LEKYDFD QLG+KVKGTVV +EANGALVEIA 
Sbjct: 70  QTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIAA 129

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPLQEASIHR+KRVEEAGIYPGFREEFVIIG+NEDD L LSLRPIQ +LAWERCR
Sbjct: 130 KSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERCR 189

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL A DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEI M++T EE++NKELP+K L+V E
Sbjct: 190 QLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVEE 249

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TR+VLSNRK MAD++AQLEIGSVVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 250 EQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 309

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKR 363
           +I  VLKPGDILKVM+L  DREKGHIRLSTKKLEPN GDMIRNP LV+ KAEEMA+RF++
Sbjct: 310 DIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEEMARRFRQ 369

Query: 364 RITQA 368
           R+ QA
Sbjct: 370 RLAQA 374

[Close]

BLAST of Sed0000500 vs. NCBI nr
Match: XP_038878013.1 (30S ribosomal protein S1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 521.5 bits (1342), Expect = 6.2e-144
Identity = 277/402 (68.91%), Postives = 326/402 (81.09%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R SKP   R  QS A   P+ AAVI  P P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCV---PLSSSRLSKPFSSRHLQSKARSLPVQAAVISGPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG++FTL DF +ALEKYDFDS+LG KVKGTV   + NGALV+
Sbjct: 61  KLKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLP+QEA IHR+K VEEAGI+PG REEFVIIGENE DDSLILSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQ 360
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EKAEEMAQ
Sbjct: 301 DRISDIGTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 RFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
            F++RI QA   ARAD+L FQ + GLT  +DGILGP TP+LP
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELP 399

[Close]

BLAST of Sed0000500 vs. NCBI nr
Match: XP_008438974.1 (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 518.1 bits (1333), Expect = 6.8e-143
Identity = 275/402 (68.41%), Postives = 325/402 (80.85%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R SKP   +   + +   P+ AAVI  P P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCV---PLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG+SFTL DF +ALEKYDFDS+LG KVKGTV   + NGALV+
Sbjct: 61  KLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLPLQEA IHR+K VEEAGI+PG REEFVIIGENE DDSLILSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQ 360
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EKAEEMAQ
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 RFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
            F++RI QA   ARAD+L FQ + GLT  +DGILGP TP+LP
Sbjct: 361 TFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELP 399

[Close]

BLAST of Sed0000500 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 3.5e-134
Identity = 249/362 (68.78%), Postives = 301/362 (83.15%), Query Frame = 0


Query: 40  PIVAAVICSPNPTSQARDRFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQ 99
           PIV+AV  S    +Q R+R  LK  FEDA +RCRN PMEGVSFT+ DF +AL+KYDF+S+
Sbjct: 38  PIVSAVAVS---NAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSE 97

Query: 100 LGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGE 159
           +G++VKGTV   +ANGALV+I  KS AYLPL EA I+R+K VEEAGI PG REEFVIIGE
Sbjct: 98  MGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGE 157

Query: 160 NE-DDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSE 219
           NE DDSLILSLR IQ +LAWERCRQL AEDVVVKGK+V ANKGGV+ +VEGL+GFVPFS+
Sbjct: 158 NEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQ 217

Query: 220 ISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKF 279
           IS  ++AEE+L KE+P+KF+ V+EE +R+V+SNRKAMAD+QAQL IGSVVTGTV+ L+ +
Sbjct: 218 ISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPY 277

Query: 280 GAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPN 339
           GAF+D+GGI+GLLH+S+ SHDR+++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP 
Sbjct: 278 GAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 337

Query: 340 PGDMIRNPKLVYEKAEEMAQRFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQ 398
           PGDMIRNPKLV+EKAEEMAQ F++RI QA   ARAD+L FQ + GLT  SDGILGP T  
Sbjct: 338 PGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSD 396

[Close]

BLAST of Sed0000500 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.9e-127
Identity = 245/404 (60.64%), Postives = 314/404 (77.72%), Query Frame = 0


Query: 1   MASMALQSTVLK---RTAQFPIPYRRSKPLGLRRRQSMASPFPIVAAVICSPNPTSQARD 60
           MAS+A Q + L+    ++   +  R SK    + + +  SP  IVAAV  S   + Q ++
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFP-QNKSASVSP-TIVAAVAMS---SGQTKE 60

Query: 61  RFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGAL 120
           R  LK  FEDA +RCR  PMEGV+FT+ DF +A+E+YDF+S++G +VKGTV + +ANGAL
Sbjct: 61  RLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGAL 120

Query: 121 VEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDL 180
           V+I+ KS AYL +++A IHR+K VEEAGI PG  EEFVIIGENE DDSL+LSLR IQ +L
Sbjct: 121 VDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYEL 180

Query: 181 AWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVK 240
           AWERCRQL AEDV+VK KV+ ANKGG++ +VEGL+GFVPFS+IS    AEE+L KE+P+K
Sbjct: 181 AWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLK 240

Query: 241 FLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISET 300
           F+ V+EE T++VLSNRKA+AD+QAQL IGSVV G V+ L+ +GAF+D+GGI+GLLH+S+ 
Sbjct: 241 FVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQI 300

Query: 301 SHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEM 360
           SHDR+++I  VL+PGD LKVMIL HDR++G + LSTKKLEP PGDMIRNPKLV+EKAEEM
Sbjct: 301 SHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 360

Query: 361 AQRFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
           AQ F++RI QA   ARAD+L FQ + GLT  SDGILGP   +LP
Sbjct: 361 AQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELP 399

[Close]

BLAST of Sed0000500 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 273.1 bits (697), Expect = 5.0e-72
Identity = 140/292 (47.95%), Postives = 198/292 (67.81%), Query Frame = 0


Query: 76  PMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASI 135
           P   + FT  DF + L++YD+    G  V GTV  +E  GAL++I  K+ A+LP+QE SI
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 136 HRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKV 195
           +R++  EE       RE F++  ENED  L LS+R I+   AWER RQL  ED  V+ +V
Sbjct: 67  NRVESPEEVLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEV 126

Query: 196 VDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAM 255
              N+GG LV +EGL+GF+P S IS     E+++ +ELP+KFL V+E+  R+VLS+R+A+
Sbjct: 127 FATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRAL 186

Query: 256 ADNQA-QLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDIL 315
            + +  +LE+G VV G VR ++ +GAF+D+GG+ GLLHISE SHD I    +V    D +
Sbjct: 187 VERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEV 246

Query: 316 KVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKRRITQ 367
           KVMI+  D E+G I LSTK+LEP PGDM+RNP++VYEKAEEMA +++ ++ Q
Sbjct: 247 KVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298

[Close]

BLAST of Sed0000500 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.8e-67
Identity = 135/285 (47.37%), Postives = 191/285 (67.02%), Query Frame = 0


Query: 80  VSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLK 139
           + FTL DF + L+KYD+    G  V GTV  +E+ GAL++I  K+ AY+P+QE SI+R+ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 140 RVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDAN 199
             EE       RE F++  ENED  L LS+R I+   AWER RQL AED  V+  V   N
Sbjct: 70  DPEEVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATN 129

Query: 200 KGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQ 259
           +GG LV +EGL+GF+P S IS     E+++ ++LP+KFL V+EE  R+VLS+R+A+ + +
Sbjct: 130 RGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERK 189

Query: 260 AQ-LEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMI 319
              LE+  VV G+VR ++ +GAF+D+GG+ GLLHISE SHD I    +V    D +KVMI
Sbjct: 190 MNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMI 249

Query: 320 LKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKRR 364
           +  D E+G I LSTK+LEP PG M+++  LV E A+EMA+ F+++
Sbjct: 250 IDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQK 294

[Close]

BLAST of Sed0000500 vs. ExPASy Swiss-Prot
Match: O33698 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.4e-42
Identity = 102/281 (36.30%), Postives = 163/281 (58.01%), Query Frame = 0


Query: 86  DFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIATKSPAYLPLQEASIHRLKRVEEAG 145
           DF  ALE    DSQ G  V+G V +   +GA ++I  K+PA+LP +EA++H +  + EA 
Sbjct: 13  DFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EAH 72

Query: 146 IYPGFREEFVII-GENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVL 205
           +      EF++I  +NED  + +SLR +  + AW R  +L      V+ KV  +NKGGV 
Sbjct: 73  LPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVT 132

Query: 206 VVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQA-QLE 265
             +EGL+ F+P S ++     + +  K L V FL VN    ++VLS R+A       ++E
Sbjct: 133 ADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIE 192

Query: 266 IGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDR 325
           +G ++ G V  L+ FG FVDLGG   LL I++ S   +A++ A+ K GD ++ +++  D 
Sbjct: 193 VGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDN 252

Query: 326 EKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKRRI 365
            KG I LSTK LE +PG+++ N   +   A + A+R ++++
Sbjct: 253 TKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292

[Close]

BLAST of Sed0000500 vs. ExPASy TrEMBL
Match: A0A6J1C966 (30S ribosomal protein S1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009464 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.3e-144
Identity = 277/402 (68.91%), Postives = 327/402 (81.34%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R S P   R  Q+ A   P+ AAVI SP P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCA---PLSSSRLSTPFSPRHLQNKARSLPVHAAVISSPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FEDA +RCRN P+EG+SFTL DF +ALEKYDFDS++G KVKGTV   +ANGALV+
Sbjct: 61  KLKEVFEDAYERCRNAPVEGISFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDANGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLP+QEA IHR+K VEEAGI+PG REEFVIIGENE DDSL+LSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPVQEACIHRIKHVEEAGIFPGVREEFVIIGENEADDSLVLSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQ 360
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EKAEEMAQ
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 RFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
            F++RI QA   ARAD+L FQ + GLT  +DGILGP TP+LP
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELP 399

[Close]

BLAST of Sed0000500 vs. ExPASy TrEMBL
Match: A0A5A7SUN2 (30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00730 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 3.0e-144
Identity = 272/365 (74.52%), Postives = 306/365 (83.84%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMAS-PFPIVAAVICSPNPTSQARDRFNLK 63
           MA   T L+      I +  SKPLG  R+Q+ A+  F ++AAVI SP P+    +RF LK
Sbjct: 10  MAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKLK 69

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRC N PMEGVSFTL  FL++LEKYDFD QLG+KVKGTVV +EANGALVEIA 
Sbjct: 70  QTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIAA 129

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPLQEASIHR+KRVEEAGIYPGFREEFVIIG+NEDD L LSLRPIQ +LAWERCR
Sbjct: 130 KSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERCR 189

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL A DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEI M++T EE++NKELP+K L+V E
Sbjct: 190 QLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVEE 249

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TR+VLSNRK MAD++AQLEIGSVVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 250 EQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 309

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKR 363
           +I  VLKPGDILKVM+L  DREKGHIRLSTKKLEPN GDMIRNP LV+ KAEEMA+RF++
Sbjct: 310 DIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEEMARRFRQ 369

Query: 364 RITQA 368
           R+ QA
Sbjct: 370 RLAQA 374

[Close]

BLAST of Sed0000500 vs. ExPASy TrEMBL
Match: A0A1S4E424 (30S ribosomal protein S1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103501305 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 3.0e-144
Identity = 272/365 (74.52%), Postives = 306/365 (83.84%), Query Frame = 0


Query: 4   MALQSTVLKRTAQFPIPYRRSKPLGLRRRQSMAS-PFPIVAAVICSPNPTSQARDRFNLK 63
           MA   T L+      I +  SKPLG  R+Q+ A+  F ++AAVI SP P+    +RF LK
Sbjct: 10  MAQPLTGLRSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPSPLTTERFKLK 69

Query: 64  ATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVEIAT 123
            TF DAADRC N PMEGVSFTL  FL++LEKYDFD QLG+KVKGTVV +EANGALVEIA 
Sbjct: 70  QTFNDAADRCHNAPMEGVSFTLQRFLASLEKYDFDPQLGSKVKGTVVYIEANGALVEIAA 129

Query: 124 KSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENEDDSLILSLRPIQSDLAWERCR 183
           KSPAYLPLQEASIHR+KRVEEAGIYPGFREEFVIIG+NEDD L LSLRPIQ +LAWERCR
Sbjct: 130 KSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGDNEDDCLTLSLRPIQYELAWERCR 189

Query: 184 QLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNE 243
           QL A DVVVKGKVV ANKGGVLVVVEGLKGFVPFSEI M++T EE++NKELP+K L+V E
Sbjct: 190 QLQAADVVVKGKVVSANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVEE 249

Query: 244 ELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSHDRIA 303
           E TR+VLSNRK MAD++AQLEIGSVVTGTV RL KFGAFVD+GG+HGLLHISE SHDRI 
Sbjct: 250 EQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLVKFGAFVDIGGVHGLLHISEISHDRIL 309

Query: 304 NIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKR 363
           +I  VLKPGDILKVM+L  DREKGHIRLSTKKLEPN GDMIRNP LV+ KAEEMA+RF++
Sbjct: 310 DIAGVLKPGDILKVMVLNIDREKGHIRLSTKKLEPNNGDMIRNPGLVFNKAEEMARRFRQ 369

Query: 364 RITQA 368
           R+ QA
Sbjct: 370 RLAQA 374

[Close]

BLAST of Sed0000500 vs. ExPASy TrEMBL
Match: A0A1S3AXL6 (30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 3.3e-143
Identity = 275/402 (68.41%), Postives = 325/402 (80.85%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q T L+     P+   R SKP   +   + +   P+ AAVI  P P+ Q ++RF
Sbjct: 1   MASMAQQFTGLRCV---PLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG+SFTL DF +ALEKYDFDS+LG KVKGTV   + NGALV+
Sbjct: 61  KLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLPLQEA IHR+K VEEAGI+PG REEFVIIGENE DDSLILSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+LNKELP+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKAMAD+QAQL IGSVVTGTV+ L+ +GAF+D+GGI+GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQ 360
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EKAEEMAQ
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 RFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
            F++RI QA   ARAD+L FQ + GLT  +DGILGP TP+LP
Sbjct: 361 TFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELP 399

[Close]

BLAST of Sed0000500 vs. ExPASy TrEMBL
Match: A0A6J1F6H4 (30S ribosomal protein S1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442576 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 3.1e-141
Identity = 269/402 (66.92%), Postives = 325/402 (80.85%), Query Frame = 0


Query: 1   MASMALQSTVLKRTAQFPIPYRR-SKPLGLRRRQSMASPFPIVAAVICSPNPTSQARDRF 60
           MASMA Q   L+     P+   R SKP   R  Q+ A   P+ AAVI SP P+ Q ++RF
Sbjct: 1   MASMAQQFNGLRCA---PLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERF 60

Query: 61  NLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGALVE 120
            LK  FE+A +RCRN P+EG+SFT+ DF SA+EKYDF+S++G KVKGTV   +ANGALV+
Sbjct: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVD 120

Query: 121 IATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDLAW 180
           I  KS AYLPLQEA IHR+K VEEAGIYPG R+EFVIIGENE DDSL+LSLR IQ DLAW
Sbjct: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAW 180

Query: 181 ERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFL 240
           ERCRQL AEDVVVKGKVVDANKGGV+ VVEGL+GFVPFS+IS  +TAEE+L KE+P+KF+
Sbjct: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFV 240

Query: 241 IVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISETSH 300
            V+EE +R+VLSNRKA+AD+QAQL IGSVV GTV+ L+ +GAF+D+GG++GLLH+S+ SH
Sbjct: 241 EVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISH 300

Query: 301 DRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEMAQ 360
           DRI++I  VL+PGD LKVMIL HDRE+G + LSTKKLEP PGDMIRNPKLV+EKAEEMAQ
Sbjct: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 RFKRRI--TQAGARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
            F++RI   +A ARAD+L FQ + GLT  +DGILGP TP+LP
Sbjct: 361 TFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELP 399

[Close]

BLAST of Sed0000500 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 457.2 bits (1175), Expect = 1.3e-128
Identity = 245/404 (60.64%), Postives = 314/404 (77.72%), Query Frame = 0


Query: 1   MASMALQSTVLK---RTAQFPIPYRRSKPLGLRRRQSMASPFPIVAAVICSPNPTSQARD 60
           MAS+A Q + L+    ++   +  R SK    + + +  SP  IVAAV  S   + Q ++
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFP-QNKSASVSP-TIVAAVAMS---SGQTKE 60

Query: 61  RFNLKATFEDAADRCRNDPMEGVSFTLHDFLSALEKYDFDSQLGAKVKGTVVQVEANGAL 120
           R  LK  FEDA +RCR  PMEGV+FT+ DF +A+E+YDF+S++G +VKGTV + +ANGAL
Sbjct: 61  RLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGAL 120

Query: 121 VEIATKSPAYLPLQEASIHRLKRVEEAGIYPGFREEFVIIGENE-DDSLILSLRPIQSDL 180
           V+I+ KS AYL +++A IHR+K VEEAGI PG  EEFVIIGENE DDSL+LSLR IQ +L
Sbjct: 121 VDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYEL 180

Query: 181 AWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVK 240
           AWERCRQL AEDV+VK KV+ ANKGG++ +VEGL+GFVPFS+IS    AEE+L KE+P+K
Sbjct: 181 AWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLK 240

Query: 241 FLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLGGIHGLLHISET 300
           F+ V+EE T++VLSNRKA+AD+QAQL IGSVV G V+ L+ +GAF+D+GGI+GLLH+S+ 
Sbjct: 241 FVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQI 300

Query: 301 SHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPKLVYEKAEEM 360
           SHDR+++I  VL+PGD LKVMIL HDR++G + LSTKKLEP PGDMIRNPKLV+EKAEEM
Sbjct: 301 SHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 360

Query: 361 AQRFKRRITQAG--ARADLLSFQSQGGLTF-SDGILGPCTPQLP 398
           AQ F++RI QA   ARAD+L FQ + GLT  SDGILGP   +LP
Sbjct: 361 AQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELP 399

[Close]

BLAST of Sed0000500 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-19
Identity = 65/215 (30.23%), Postives = 117/215 (54.42%), Query Frame = 0


Query: 156 IIGENEDDSLILSLRPIQSDLAWERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVP 215
           ++G       +LS R     +AW R RQ+   +  ++ K+ + N GG+L  +EGL+ F+P
Sbjct: 251 VLGRTLSGRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIP 310

Query: 216 FSE----ISMVTTAEEILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQLEIGSVVTGT 275
             E    ++  T  +E + +   V+   +NE+   ++LS +  +A  +  L  G+++ GT
Sbjct: 311 KQELVKKVNTFTELKENVGRRFLVQITRLNEDKNDLILSEK--VAWEKLYLREGTLLEGT 370

Query: 276 VRRLEKFGAFVDLG--GIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIR 335
           V ++  +GA V LG     GLLHIS  +  RI ++  VL+  + +KV+++K       I 
Sbjct: 371 VVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKIS 430

Query: 336 LSTKKLEPNPGDMIRNPKLVYEKAEEMAQRFKRRI 365
           LS   LE  PG  I + + V+ +AEEMA++++ ++
Sbjct: 431 LSIADLESEPGLFISDREKVFTEAEEMAKKYREKM 462

[Close]

BLAST of Sed0000500 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 89.4 bits (220), Expect = 7.3e-18
Identity = 56/180 (31.11%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 178 WERCRQLLAEDVVVKGKVVDANKGGVLVVVEGLKGFVPFSEISMVTTAEE---------- 237
           W+  +         +G+V   N GG+L+    L GF+P+ ++S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 238 -ILNKELPVKFLIVNEELTRIVLSNRKAMADNQAQ-LEIGSVVTGTVRRLEKFGAFVDL- 297
            ++  +LPVK +  +EE  +++LS + A+    +Q + +G V  G V  +E +GAF+ L 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 298 ---GGIH--GLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNP 340
              G  H  GL+H+SE S D + ++  VL+ GD ++V++   D+EK  I LS K+LE +P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]

BLAST of Sed0000500 vs. TAIR 10
Match: AT3G11964.1 (RNA binding;RNA binding )

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-11
Identity = 61/216 (28.24%), Postives = 96/216 (44.44%), Query Frame = 0


Query: 185  LAEDVVVKGKVVDA-NKGGVLVVVEGLKGFVPFSEISMVTTAEEILNKELPVKFLIVNEE 244
            L+ D+ V+G V +  +KG  +++   ++  V  S +      E    KE PV  L+    
Sbjct: 1342 LSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEP--EKEFPVGKLVTGRV 1401

Query: 245  LTRIVLSNR--------------KAMADNQAQLEIGSVVTGTVRRLEKFGAFVDLG--GI 304
            L    LS R              K+ + +  +L +G +++G +RR+E FG F+D+   G+
Sbjct: 1402 LNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGM 1461

Query: 305  HGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNPGDMIRNPK 364
             GL HIS+ S DR+ N+ A  K G+ ++  ILK D EK  I L  K      GD  +   
Sbjct: 1462 VGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQP 1521

Query: 365  LVYEKAEEMAQRFKRRITQAGARADLLSFQSQGGLT 384
            L  +             ++  A  D   FQ   G T
Sbjct: 1522 LSEDNTSMECDPINDPKSEVLAAVDDFGFQETSGGT 1555

[Close]

BLAST of Sed0000500 vs. TAIR 10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative )

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-10
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 232 ELPVKFLIVNEELTRIVLSNRKAMADNQAQLE--------IGSVVTGTVRRLEKFGAFVD 291
           E   +  I N  LT IV  N+  M   Q Q++        +G V  GTV  ++++GAFV+
Sbjct: 638 ETGARLSIDNGTLT-IVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVE 697

Query: 292 L-GGIHGLLHISETSHDRIANIFAVLKPGDILKVMILKHDREKGHIRLSTKKLEPNP 340
             GG  GLLH+SE SH+ ++ +  VL  G  +  M ++ D  +G+I+LS K L P P
Sbjct: 698 FPGGQQGLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP 752

The following BLAST results are available for this feature:

BLAST of Sed0000500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885297.1	1.2e-152	74.56	30S ribosomal protein S1, chloroplastic-like [Benincasa hispida] >XP_038885298.1...	[more]
XP_022138241.1	2.8e-144	68.91	30S ribosomal protein S1, chloroplastic [Momordica charantia]	[more]
XP_016902972.1	6.2e-144	74.52	PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis melo] >KAA00349...	[more]
XP_038878013.1	6.2e-144	68.91	30S ribosomal protein S1, chloroplastic-like [Benincasa hispida]	[more]
XP_008438974.1	6.8e-143	68.41	PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo]	[more]

BLAST of Sed0000500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29344	3.5e-134	68.78	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
Q93VC7	1.9e-127	60.64	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
P46228	5.0e-72	47.95	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
P73530	4.8e-67	47.37	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
O33698	5.4e-42	36.30	30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805...	[more]

BLAST of Sed0000500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C966	1.3e-144	68.91	30S ribosomal protein S1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7SUN2	3.0e-144	74.52	30S ribosomal protein S1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4E424	3.0e-144	74.52	30S ribosomal protein S1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A1S3AXL6	3.3e-143	68.41	30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 ...	[more]
A0A6J1F6H4	3.1e-141	66.92	30S ribosomal protein S1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0000500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30510.1	1.3e-128	60.64	ribosomal protein S1	[more]
AT1G71720.1	1.3e-19	30.23	Nucleic acid-binding proteins superfamily	[more]
AT3G23700.1	7.3e-18	31.11	Nucleic acid-binding proteins superfamily	[more]
AT3G11964.1	2.3e-11	28.24	RNA binding;RNA binding	[more]
AT5G14580.1	3.3e-10	36.75	polyribonucleotide nucleotidyltransferase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 263..333 e-value: 2.1E-25 score: 100.4 coord: 99..170 e-value: 3.4E-6 score: 36.6 coord: 186..252 e-value: 1.1E-5 score: 34.9
None	No IPR available	GENE3D	2.40.50.140		coord: 85..180 e-value: 6.8E-9 score: 37.4
None	No IPR available	GENE3D	2.40.50.140		coord: 259..338 e-value: 2.9E-23 score: 83.6
None	No IPR available	GENE3D	2.40.50.140		coord: 181..258 e-value: 5.7E-8 score: 34.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 333..357
None	No IPR available	PANTHER	PTHR10724	30S RIBOSOMAL PROTEIN S1	coord: 50..355
None	No IPR available	PANTHER	PTHR10724:SF11	30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC	coord: 50..355
None	No IPR available	CDD	cd04465	S1_RPS1_repeat_ec2_hs2	coord: 199..252 e-value: 9.48419E-13 score: 60.5504
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 100..170 e-value: 8.5E-6 score: 26.0 coord: 262..333 e-value: 9.0E-17 score: 61.2 coord: 187..250 e-value: 9.2E-8 score: 32.3
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 188..252 score: 13.609037
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 265..333 score: 20.808588
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 101..170 score: 13.046572
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 96..196
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 183..256
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 259..339

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000500.1	Sed0000500.1	mRNA
Sed0000500.2	Sed0000500.2	mRNA
Sed0000500.3	Sed0000500.3	mRNA
Sed0000500.4	Sed0000500.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003735	structural constituent of ribosome