Sed0000448.1 (mRNA) Chayote v1

Overview


Name	Sed0000448.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	rhomboid-like protein 20
Location	LG12: 6992211 .. 6998130 (+)
Sequence length	1373
RNA-Seq Expression	Sed0000448.1
Synteny	Sed0000448.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAGACCAGTCCAAAGGTCCCAACAAACAGACAACAAATCAAAATCAAAATCAAAATCACAGAGAAAATTCTCCGGCCATCTGAGGCGGTCGTCGCTTCCTCTCCGGCACGATGAACGGCGGCCCGTCTGGTTTCAGTGAGTTTTCTTCTTCGATTTCTCACTTTTCGCCCTTTTCGATTTCTTCCTTCAACGTTGATCCATTTTGCTTGTGTTCTTCTCTTTCGCAGACAATGCCCCCATCACCCGCGCTTCCATAATCGCCACCGCTCTTTTCACCATTTTCTTCGGGATCAAAGGCCGCTCCAGTAACCTTGGATTGTCCTATCAGGTACTCTTTGCCCAATTGTTGGTTCATTTTGGTGCCTTGTTGTTTGGATTGTGTTTCGGAGTGGTCTAGATTTGCTTTGTTTGGTTACGACGAGCCCTGTTTTGGTTGGTTGAGTGTTCGATCATCGGTTACGCGGTGTCTTGTGTGGTAAGTTGTCGATGAGAATCTGCCTTTTCAATCGCAGGATTGTAGATCGCACTGGCCGAGTCGTTTGATTCGTAATTGTTTTTTGGAAACTGGGAAATTGGAGCTTTAGTCCTGGTCCCCTGGATATCCGAGATAATCGTGCCCATCCCTAGTTTAAGCATGGGTAGACATAGAAGGAATGGAGACTTGAGAGGTGTCTACAAATTAATGTCGGTGAGTCTCGAACCTGGGACCTTGAGAGAAGCAAACCTTCAAAGTCCAGACCATAATACCACACCTTGGGGACACTTGATTGATTTGTATTTGAAAGTGGGATCCTTTTTTCCTCATGTATGCAATGACTTATTTTAACTCACCTAGTGGGCCTTTGCACTTGAATGTAGTGGCTACCTGTCATTTAAGGCTCTAGTTGTTTTTGTATCTATCTTTTTTTATATATAGGAAACTTGAAACTTTCATTGATCGATGAAAAGTTACAATAAGCCCAATCTAGTTACAAAAAGATGTCTAATGATTCAGAAGAGTAGAAAAGCTATATTCTTTAAACGGTGTTACAATTTTGGATCTATCTTTAAACAATTTCTCTTTTACTGGCTGAGAATGGTGCAGTAGAATTTGCCTCGTGGCTGGTTGTGCAGCATGTGAACTATTTAGGTGTCCAATCGGGGGGTAATCCAAGTTCAGTAACATTTAGGGAGCCTTCTAGTTATAATATTTTTGGTTGAATTTAACTAAGGATTAGTTCTAATTTTGTTGCGGTTGGTTCCTAATTAAGTTATCTGATGTAATATTGAGATGAGATATTACATCACGTCCCTTCAAAAAAAGTGGGTTGAAGATTTTATTTCTTTTGAAACAAGGGTAACCACGTCCGTCCCTAGGCTAGGCACCGGAGACATCGAAAGAGTACTGTCACTGGAAAGACTCAAACCCGAGACCTTGAAAGGAGCATACTTTCAAAGCCCAAGTCTTCAACCACTGCGCCACCCCTTGAGGACGAAGATGTAAAAAACTAGAATTAGAAATAGGCACTCCACTTTGAGTCCTGTGCTGTACATTTTGCCTCTAAATATCATTATAATTTATAAATCCTGTTATTTCATTCCAACCACCAAGATGAATCTGTAGCACTAGAAAATTGGAAAGACATGCTTAAACGAGGGGTTTCCCTTGTCCCTATTCTGCTTTGGGTCTGTGAAAAAATATCTACAATAGAAGTTTTTGAAGAATGCTCTTTCATTACTTGGAGCTTACGGGTTTGGTTTAAAAGGGAATGAAATTGAACTGGTTTACTTGCTTGTAATTTTGGAAATGGGGTGGAAGGTTCTATGTACAGGAACTAGTTTTTTTAAGAGATTCTTTATAAGGTCCTCATCTAATGAAGTCACAGTGGTGGAAAGATTTTGTTTAAAAGTTTGGAAGGGACATGAGTTAGAAGAAGCTGTGGTAAAGGGGTCCACTCGTAAAAATACTAATTTTCTCATTCTAACTTCTATTCCATCATTGTTGTATATTATTCTTTTATATAGGACTTTTTTTTTTTTTTGAGAAACTTTTATATAGGACTTAAAGTTGACTTATTTTGCCCCTTTTCTATAGTAGAGATTGTGGTTGGAAGTACACTCTTGATCAGTTAATTCTCATTTTTGTGGCAGGATGTGATTGTGAAGCTTCGGTTTTGGAAGTTAGTAATGTCAGTTTTTGCATTTTCATCTACTCCAGAATTGATGTTTGGAGTGTTTCTGCTTTATTACTTTAGAGTATTTGAGAGACAAATAGGTTCCAACAAATATTCGGTAAGTTTTATTCAATTCATGGTGCAGGATTTTATTAAAACATGTCACCCGTCAGTCTCTAAATTCATGGATCACATTAATACAATGCAATGTTTGATGTATCAACACTTCTATATCTTCAAACGAATAGAGGCATAAAAAATCAGAAAGTGTATAAAAGTAGAACTGTAGAAGTCTTTATGACACTGCTTTAGTTTCTATATTGCAATATATTACTTGAGATGCATTCCCTTTCTTATATAATTTTATTGTTCCATAAGGGTAGTAAAAGCTTTGTGGTCATATCATACGTGGAATGGCATATGCTTGTAATACGAAAAATAGTATCACATTATTACTATGCCTCAGCCAATGCTAATAACACCATAATGTTCCCAACATATCTCTTACTAGTATACTTACAACATTTGTCTGGTTATTTAACATGACAAAGTAGGTGTTTATATTTGAAATAATTTATTGTTTTTCATTTCACTTCCCTCCGCAAAATAAGGTTGGCAGACTGAAATTTAGATCATCGTCTTTAGTTTCTATTTTAGAAAATAGATACCAAGGGTGAGATGAAAGTCATGCTTGTTGCCTTGCTTGTCTAATATTCACAGTTATTGTTTGTTAACTATAGCGGTCTTCACCCCAATTGTAAAATAATATAATGTTTTAGTTTTTGTGCTTAAAACTCTTTCTTTTCCTTTTTTTCTTCCTTAGTGGATATGCGTTTTTTCTTAAATAGATTTATATTGATATTCAGTTGTGATGCAGGTCTTTATCTTGTTCTCTATAGTAACATCCTTACTTTTTGAGGTCCTTGCTATATCATTACTTAAAGGTATGCATTTTGGTTTAATGAATTAGACTAATAATATGCTAGGGCAGCTAGCATGATTTAAGCTCATGTTTATATTTTTTTTAATGTTGTTTAGCAACCCCTTTTCATTTTTGTAGAGGCGAACTCTCCTTATTTCCCCTCTTTTTGTCCCCTAAAATTTGGGGAATTAGATTGGAAGTCCTTGATCTTTCTGACATTTTTTTCTTGTAAGCCTTTGTATATAATCAGCTGGTTTCTTTTTTCTCTCTACTTATCTCTTCCGTAAACTTCTCAAGTTGATAATCCAAATGAAATTCCATTTCTTTTCCCGACTGATGGCTTTAGGAAGGACTCACACCTTGGATTTTATGTAGTGAACCCATTACTTTGTGCTTGGCCCCAATTGGTGCTTTATGAGCAAGGGGCCTTGAGAAGATTTGAACCCTTGGTTTATTATTTTTTTATTTATTTTCGAGAAAAGAATGAAAGTAAATACAACCAAAAAGATATACAAAAGGAGTCCACAAAAGGGAGGCCTCCCTAAAAAAATGGCCTTCAATAAAATAAAATAGTGTAGTGTCTAGAGAATGATTTCAAAAGAGCTTAGAAACAGAGGTCCAAAGAGAAACATATAATTTAATGAGGGCTCTCATATCACCTTGATGATTCTATTGTTTCTCTCTCCAAACCCTACAAAATGGCACACGCTCAAACTTGCTACAAAAAACTCGGGAAATAAGCAATTCGCTTCAACCATATGTTATGGCTTTGTTTGTTTGCTTCTCTGTTGAGGAGTCGGTTTTGGCATATTTGTTATTCCTACCCAGAGCATCTGTATATTGGTGGAAGCCATCTTTGATTCTCCATTTTAGGATAAAGACGGGGTTTCTTATGGCAAGCTGGCTTTTGTGCTGTTCTTTGAAGTATTTGGTTTGATGGAAAAATAGGATAGCTTTCATGGGTTTAGATAGGATGTGAATCAGATTTTTGAGCTTGCCCATTACATTTTGCAATATGAGATTTATTGTTAATTCTATGCTATCTTGTTAACATTGGAGTTCATTTCTGTTTTGTCGTTGGGGAAAAAGATATATTTCTAACAATTTCACTTGGCTAACACTCATTTTTTTTTTCTTTTTGAGAAGATCCTGCTGCGAATCTAGTCACTTCTGGACCATATGGTCTTTTATTTGCCTCCTTCATACCCTTCTTCTTTGATATTCCTGTTTCAACTCAGTTCCGTGTATTTGGAGTTCGTTTCTCTGACAAGTCTTTCATATATCTGGCTGGTCTTCAGGTTAAAAGCGACTGTATTTATAGTTTTGATACCCGTTCTGCTTTCTCAAGCTGTATAATATAGTTTATTGTTGATCTTGCAGCTCCTTCTGTCCTCGTGGAGAAGATCCATCTTACCAGGAATATGCGGCATTCTCGCTGGTTCCTTATATCGTTTGAATGTATTTGGCATCCGCAAGGCCAAGGTTAAATTCAAAATTCAAAAAAATCTTCTATAATCTGATAGTATTCTGATGTTAGAAATTTTGATCTTTTATGTGATGATTTCATTCTTTTATTTGGTTTTGTTCGTTTTGAGTCAGTTTGATGTAGGTTCTCTTATTTTTTGGTCATAGGGTCGTTTCGAGTTCTCTAAAAAATCCATGTGTATCTCTGTGTTTTGCAGTTTCCTGAGTTCATCGGTTCTTTTTTTTCGCGATTTTCTTTACCATTTGCTGGGAATCCTCCAGCAGCCCCAAGTAGAAATGTTAGAGGAAACATGCCCTCTTTCATGGGCCGCCAGGTTGAGGTTAGTACATTTGGCAAATGCTTCTATTTGCTATTAGTTTAAACACATTGATACGCATCATTCGAGGAAGAAATTTGGACTATTTTTTTCGATTTCTAAGCATGAGCTAACTTAGCCATGGAAATTGCGAGAATGTTGGTACTTTCTCTTTTTGAATTCAATAATAGAGATGTTTCATTGATGTCTGACTTAAAGATGGGCGTGATTACTCTAAATATAGTGGAGCACTGCTTCAATTTTTCGGTTTCCAAAAAGAAAATCAATAATAGGGATGGAGGATTCAAACCTGACCTCTTAATTATAAATCATACATCATATTAGTTGAGTTATACTCCTTATTGGCGAGAATGTTGGTACTATCCGATGTTGTAGTCCTTAGAATAATCTGTGTTGGCGTAATTAGCTGAGTGTATTAGTGACACGGAAAATGCAAGTTGTGGGCTTCAGCCAGCCTCTTAACTGGTTTATTTTCTCTTGTCCTATTTTAGAGGAACTATACTCCTGTGCCAACTGCCACAGCAGAACCACCAGAGGACTCCATTGCTACCCTTGTTTCAATGGGCTTTGACAGAAACTCAGCCAGGCAGGCTCTTGTGCATGCCCGAAACAACGTTAACATGGCGACAAACATCCTTCTTGAATCACAATCTCACTAATATCATGAAAAACTTTCTGGATATATGAAACATTGAAACCTTTGCTGTCCATAATTCCGGGAACAATCGAATTCAGTATCGAGGAATGACGGTCCGACAAACTTGCATTTGCTGACAACTGAGTTTTGATAGGTTGCAGGAACCCAAACTCTTAGTGGGTTCCCATTTTGTTCCTCTATTGTAGCTGTCAAATTTTATTGATACTTGATGTCTGATTACAAAAGATTGCTTAGTCTGTACTTATTAAGTTAAGATGGTAGAGATATTTGTGGAAGCAGAATGTGCAGAATTCTTTTGTTCTGAGATATCTGCATAAAAATTGCAGATTATTACTCAAGTTTTATTTGCGGCTAATCGTGATTAACTCGTTATATTCAAACAT

mRNA sequence

CACAGACCAGTCCAAAGGTCCCAACAAACAGACAACAAATCAAAATCAAAATCAAAATCACAGAGAAAATTCTCCGGCCATCTGAGGCGGTCGTCGCTTCCTCTCCGGCACGATGAACGGCGGCCCGTCTGGTTTCAACAATGCCCCCATCACCCGCGCTTCCATAATCGCCACCGCTCTTTTCACCATTTTCTTCGGGATCAAAGGCCGCTCCAGTAACCTTGGATTGTCCTATCAGGATGTGATTGTGAAGCTTCGGTTTTGGAAGTTAGTAATGTCAGTTTTTGCATTTTCATCTACTCCAGAATTGATGTTTGGAGTGTTTCTGCTTTATTACTTTAGAGTATTTGAGAGACAAATAGGTTCCAACAAATATTCGGTCTTTATCTTGTTCTCTATAGTAACATCCTTACTTTTTGAGGTCCTTGCTATATCATTACTTAAAGATCCTGCTGCGAATCTAGTCACTTCTGGACCATATGGTCTTTTATTTGCCTCCTTCATACCCTTCTTCTTTGATATTCCTGTTTCAACTCAGTTCCGTGTATTTGGAGTTCGTTTCTCTGACAAGTCTTTCATATATCTGGCTGGTCTTCAGCTCCTTCTGTCCTCGTGGAGAAGATCCATCTTACCAGGAATATGCGGCATTCTCGCTGGTTCCTTATATCGTTTGAATGTATTTGGCATCCGCAAGGCCAAGTTTCCTGAGTTCATCGGTTCTTTTTTTTCGCGATTTTCTTTACCATTTGCTGGGAATCCTCCAGCAGCCCCAAGTAGAAATGTTAGAGGAAACATGCCCTCTTTCATGGGCCGCCAGGTTGAGAGGAACTATACTCCTGTGCCAACTGCCACAGCAGAACCACCAGAGGACTCCATTGCTACCCTTGTTTCAATGGGCTTTGACAGAAACTCAGCCAGGCAGGCTCTTGTGCATGCCCGAAACAACGTTAACATGGCGACAAACATCCTTCTTGAATCACAATCTCACTAATATCATGAAAAACTTTCTGGATATATGAAACATTGAAACCTTTGCTGTCCATAATTCCGGGAACAATCGAATTCAGTATCGAGGAATGACGGTCCGACAAACTTGCATTTGCTGACAACTGAGTTTTGATAGGTTGCAGGAACCCAAACTCTTAGTGGGTTCCCATTTTGTTCCTCTATTGTAGCTGTCAAATTTTATTGATACTTGATGTCTGATTACAAAAGATTGCTTAGTCTGTACTTATTAAGTTAAGATGGTAGAGATATTTGTGGAAGCAGAATGTGCAGAATTCTTTTGTTCTGAGATATCTGCATAAAAATTGCAGATTATTACTCAAGTTTTATTTGCGGCTAATCGTGATTAACTCGTTATATTCAAACAT

Coding sequence (CDS)

ATGAACGGCGGCCCGTCTGGTTTCAACAATGCCCCCATCACCCGCGCTTCCATAATCGCCACCGCTCTTTTCACCATTTTCTTCGGGATCAAAGGCCGCTCCAGTAACCTTGGATTGTCCTATCAGGATGTGATTGTGAAGCTTCGGTTTTGGAAGTTAGTAATGTCAGTTTTTGCATTTTCATCTACTCCAGAATTGATGTTTGGAGTGTTTCTGCTTTATTACTTTAGAGTATTTGAGAGACAAATAGGTTCCAACAAATATTCGGTCTTTATCTTGTTCTCTATAGTAACATCCTTACTTTTTGAGGTCCTTGCTATATCATTACTTAAAGATCCTGCTGCGAATCTAGTCACTTCTGGACCATATGGTCTTTTATTTGCCTCCTTCATACCCTTCTTCTTTGATATTCCTGTTTCAACTCAGTTCCGTGTATTTGGAGTTCGTTTCTCTGACAAGTCTTTCATATATCTGGCTGGTCTTCAGCTCCTTCTGTCCTCGTGGAGAAGATCCATCTTACCAGGAATATGCGGCATTCTCGCTGGTTCCTTATATCGTTTGAATGTATTTGGCATCCGCAAGGCCAAGTTTCCTGAGTTCATCGGTTCTTTTTTTTCGCGATTTTCTTTACCATTTGCTGGGAATCCTCCAGCAGCCCCAAGTAGAAATGTTAGAGGAAACATGCCCTCTTTCATGGGCCGCCAGGTTGAGAGGAACTATACTCCTGTGCCAACTGCCACAGCAGAACCACCAGAGGACTCCATTGCTACCCTTGTTTCAATGGGCTTTGACAGAAACTCAGCCAGGCAGGCTCTTGTGCATGCCCGAAACAACGTTAACATGGCGACAAACATCCTTCTTGAATCACAATCTCACTAA

Protein sequence

MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAFSSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTSGPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGILAGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNYTPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH

Homology

[Close]

BLAST of Sed0000448.1 vs. NCBI nr
Match: KAG6581669.1 (Rhomboid-like protein 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 517.3 bits (1331), Expect = 8.5e-143
Identity = 264/292 (90.41%), Postives = 281/292 (96.23%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR+ ++A+ALFTIFFGI+GRS  LGLSYQDVIVKLR WKLV SVFAF
Sbjct: 1   MNGGPSGFNNAPVTRSFVVASALFTIFFGIQGRSIKLGLSYQDVIVKLRIWKLVTSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI+TSLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIITSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEF+ SFF RFSLP AGNPPAAP+R+VRGNMPSF+GRQVER++
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFVSSFFLRFSLPSAGNPPAAPTRDVRGNMPSFVGRQVERSH 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
            PVPTAT EPPEDSIATLVSMGFDRNSARQALVHA N+VN+ATNILLESQSH
Sbjct: 241 PPVPTAT-EPPEDSIATLVSMGFDRNSARQALVHAGNDVNIATNILLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. NCBI nr
Match: XP_023516629.1 (rhomboid-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 264/292 (90.41%), Postives = 281/292 (96.23%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR  ++A+ALFTIFFGI+GRS  LGLSYQDVIVKLR WKLV SVFAF
Sbjct: 1   MNGGPSGFNNAPVTRNFVVASALFTIFFGIQGRSIKLGLSYQDVIVKLRIWKLVTSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI+TSLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIITSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEF+ SFFSRFSLP AGNPPAAP+R+VRGNMPSF+GRQVER++
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFVSSFFSRFSLPSAGNPPAAPTRDVRGNMPSFVGRQVERSH 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
            PVPTAT EPPEDSIATLVSMGFDRNSARQALVHA N+VN+ATNILLESQSH
Sbjct: 241 PPVPTAT-EPPEDSIATLVSMGFDRNSARQALVHAGNDVNIATNILLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. NCBI nr
Match: XP_022930600.1 (rhomboid-like protein 20 [Cucurbita moschata])

HSP 1 Score: 516.2 bits (1328), Expect = 1.9e-142
Identity = 263/292 (90.07%), Postives = 282/292 (96.58%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR+ ++A+ALFTIFFGI+GRS  LGLSYQDVIVKLR WKLV SVFAF
Sbjct: 1   MNGGPSGFNNAPVTRSFVVASALFTIFFGIQGRSIKLGLSYQDVIVKLRIWKLVTSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI+TSLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIITSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEF+ SFFSRFSLP AGNPPAAP+R+VRGNMPSF+GRQVER++
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFVSSFFSRFSLPSAGNPPAAPTRDVRGNMPSFVGRQVERSH 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
            PVPTAT EPPEDSIATLVSMGFDRNSARQALVHA N+VN+AT+ILLESQSH
Sbjct: 241 PPVPTAT-EPPEDSIATLVSMGFDRNSARQALVHAGNDVNIATSILLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. NCBI nr
Match: KAG7018158.1 (Rhomboid-like protein 20 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 515.8 bits (1327), Expect = 2.5e-142
Identity = 263/292 (90.07%), Postives = 281/292 (96.23%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR+ ++A+ALFTIFFGI+GRS  LGLSYQDVIVKLR WKLV SVFAF
Sbjct: 1   MNGGPSGFNNAPVTRSFVVASALFTIFFGIQGRSIKLGLSYQDVIVKLRIWKLVTSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI+TSLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIITSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEF+ SFF RFSLP AGNPPAAP+R+VRGNMPSF+GRQVER++
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFVSSFFLRFSLPSAGNPPAAPTRDVRGNMPSFVGRQVERSH 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
            PVPTAT EPPEDSIATLVSMGFDRNSARQALVHA N+VN+ATNILLESQSH
Sbjct: 241 PPVPTAT-EPPEDSIATLVSMGFDRNSARQALVHAGNDVNIATNILLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. NCBI nr
Match: XP_022980682.1 (rhomboid-like protein 20 [Cucurbita maxima])

HSP 1 Score: 515.0 bits (1325), Expect = 4.2e-142
Identity = 263/292 (90.07%), Postives = 281/292 (96.23%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGF NAP+TR+ +IA+ALFTIFFGI+GRS  LGLSYQDVIVKLR WKLV SVFAF
Sbjct: 1   MNGGPSGFTNAPVTRSFVIASALFTIFFGIQGRSIKLGLSYQDVIVKLRIWKLVTSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI+TSLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIITSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEF+ SFFSRFSLP AGNPPAAP+RNVRGNMPSF+GRQVER++
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFVSSFFSRFSLPSAGNPPAAPTRNVRGNMPSFVGRQVERSH 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
            PVPTAT EPPE+SIATLVSMGFDRNSARQALVHA N+VN+ATN+LLESQSH
Sbjct: 241 PPVPTAT-EPPENSIATLVSMGFDRNSARQALVHAGNDVNIATNMLLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. ExPASy Swiss-Prot
Match: Q9LET3 (Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 6.2e-120
Identity = 217/293 (74.06%), Postives = 250/293 (85.32%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGF+NAP+T+A +I +ALFT+FFGI+GRSS LGLSYQD+  K R WKL+MS FAF
Sbjct: 1   MNGGPSGFHNAPVTKAFVITSALFTVFFGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG++LLYYFRVFERQIGSNKYSVFILFS   SLL EV+ +SLLKD  ANL+TS
Sbjct: 61  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTVSLLLEVILLSLLKDTTANLLTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGL+FASFIPF+ DIPVST+FRVFGV FSDKSFIYLAG+QLLLSSW+RSI PGICGI+
Sbjct: 121 GPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPGICGII 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGN-PPAAPSRNVRGNMPSFMGRQVERN 240
           AGSLYRLN+ GIRKAKFPEF+ SFFSR S P  GN PP APSRN+ G +    GR+ ER+
Sbjct: 181 AGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGRRAERS 240

Query: 241 YTPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
                 ++ EP E++I TLVSMGFDRN+ARQALVHARN+VN ATNILLE+QSH
Sbjct: 241 QPAPLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293

[Close]

BLAST of Sed0000448.1 vs. ExPASy Swiss-Prot
Match: Q8RXQ2 (Rhomboid-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=RBL18 PE=2 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 1.6e-107
Identity = 200/292 (68.49%), Postives = 236/292 (80.82%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+T+A +IATALFT+FFGI+G SS LGLSYQD+  K R WKL++S FAF
Sbjct: 1   MNGGPSGFNNAPVTKAFVIATALFTVFFGIRGGSSKLGLSYQDIFEKFRIWKLIISAFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SST +L+ G++LLY+FRVFERQIGSNKYSVFI FS   SL+ E + +SL KDP ANL+TS
Sbjct: 61  SSTTQLLSGLYLLYFFRVFERQIGSNKYSVFIFFSGFVSLILETILLSLTKDPTANLLTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPY L+FASF+PFF DIPV+ +F V GV FSDKSFIYLAG+QLLLSSW+RSI  GICGI+
Sbjct: 121 GPYALVFASFVPFFLDIPVTKRFGVLGVHFSDKSFIYLAGVQLLLSSWKRSIFTGICGII 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLN+FGIRKAKFPEF+ S FSRFSLP   +    P R      P+ +GRQ  R Y
Sbjct: 181 AGSLYRLNIFGIRKAKFPEFMASLFSRFSLPSLSSHSQPPRR----TSPN-LGRQAVRAY 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
                +T EP E++IATLVSMGFD+N+ARQALVHARN+VN ATNILLE+ SH
Sbjct: 241 RAPMPSTTEPSEEAIATLVSMGFDQNAARQALVHARNDVNAATNILLEAHSH 287

[Close]

BLAST of Sed0000448.1 vs. ExPASy Swiss-Prot
Match: Q5ZJQ8 (Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus OX=9031 GN=UBAC2 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-16
Identity = 87/344 (25.29%), Postives = 148/344 (43.02%), Query Frame = 0


Query: 4   GPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVK--LRFWKLVMSVFAFS 63
           G +G   AP++++ ++  +  +I   +  +      +Y    +K   + W+LV       
Sbjct: 6   GSNGLYKAPLSKSLLLVPSAISILLTLLFQHYQKFFAYNLQAIKEDFQIWRLVCGRVICL 65

Query: 64  STPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLK---DPAANLV 123
              +      L+Y FR+FER+ GS K+S F+L +   S LF++L +   +       N +
Sbjct: 66  DLKDTFCSSLLIYNFRIFERRYGSRKFSSFLLGAWTLSALFDLLLVEAAQYVFGITINSL 125

Query: 124 TSGPYGLLFASFIPFFFDIPVSTQFRVFG-VRFSDKSFIYLAGLQLLLSSWRRSILPGIC 183
            SG  G +FA F+PF+  IP     +V G    ++K+ +Y+ GLQLL S     IL  + 
Sbjct: 126 PSGFLGPVFALFVPFYCSIPRVQVTQVLGYFSITNKTLVYILGLQLLTSGSYIWIL-ALS 185

Query: 184 GILAGSLYRLNVFGIRKAK-FPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPS------ 243
           G+++G  Y  ++  + +    P ++   FS    P   +  A P+  +R  M +      
Sbjct: 186 GLISGICYNSSILKVHRILCVPSWVAKIFSWTLEPIFSS--AEPTNEIRVGMGATVDIQR 245

Query: 244 -----FMGRQV--------------------------------ERNY---------TPVP 289
                 + RQ+                                  NY         TP P
Sbjct: 246 QQRMELLDRQIMMSQVAQMRRQRQQQGGMINWNRLFPPLRHRHNENYQDHHPSDQDTPPP 305

[Close]

BLAST of Sed0000448.1 vs. ExPASy Swiss-Prot
Match: Q4R910 (Ubiquitin-associated domain-containing protein 2 OS=Macaca fascicularis OX=9541 GN=UBAC2 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-16
Identity = 85/343 (24.78%), Postives = 147/343 (42.86%), Query Frame = 0


Query: 4   GPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVK--LRFWKLVMSVFAFS 63
           G SG   AP++++ ++  +  ++   +          Y    VK   + W+L+       
Sbjct: 6   GSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQKLFVYDLHAVKNDFQIWRLICGRIICL 65

Query: 64  STPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLK----DPAANL 123
              +      L+Y FR+FER+ GS K++ F+L S V S LF+ L +  ++      AA+ 
Sbjct: 66  DLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFLLVEAMQYFFGITAASN 125

Query: 124 VTSGPYGLLFASFIPFFFDIPVSTQFRVFG-VRFSDKSFIYLAGLQLLLSS---WRRSIL 183
           + SG    +FA F+PF+  IP     ++ G +  ++K+ IY+ GLQL  S    W    +
Sbjct: 126 LPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYIW----I 185

Query: 184 PGICGILAGSLYRLNVFGIRKAK-FPEFIGSFFSRFSLP-FAGNPPAAPS---------- 243
             I G+++G  Y   +F + +    P ++  FFS    P F+ + P + +          
Sbjct: 186 VAISGLMSGLCYNSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTSEARIGMGATLDI 245

Query: 244 ------------------------RNVRGNMPSF------------MGRQVERNYTPVPT 289
                                   R  +G M ++            +  Q  R   P   
Sbjct: 246 QRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPAAP 305

[Close]

BLAST of Sed0000448.1 vs. ExPASy Swiss-Prot
Match: Q8NBM4 (Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBAC2 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.7e-16
Identity = 88/342 (25.73%), Postives = 150/342 (43.86%), Query Frame = 0


Query: 4   GPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVK--LRFWKLVMSVFAFS 63
           G SG   AP++++ ++  +  ++   +          Y    VK   + W+L+       
Sbjct: 6   GSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQKLFVYDLHAVKNDFQIWRLICGRIICL 65

Query: 64  STPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLK----DPAANL 123
              +      L+Y FR+FER+ GS K++ F+L S V S LF+ L I  ++      AA+ 
Sbjct: 66  DLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFLLIEAMQYFFGITAASN 125

Query: 124 VTSGPYGLLFASFIPFFFDIPVSTQFRVFG-VRFSDKSFIYLAGLQLLLSS---WRRSIL 183
           + SG    +FA F+PF+  IP     ++ G +  ++K+ IY+ GLQL  S    W    +
Sbjct: 126 LPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYIW----I 185

Query: 184 PGICGILAGSLYRLNVFGIRKAK-FPEFIGSFFSRFSLP-FAGNPPAAPSRNVRG----- 243
             I G+++G  Y   +F + +    P ++  FFS    P F+ + P + +R   G     
Sbjct: 186 VAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTSEARIGMGATLDI 245

Query: 244 ---NMPSFMGRQV---------------------ERNYTPV------------PTATAEP 289
                   + RQ+                      R + P+             +  A P
Sbjct: 246 QRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPAAP 305

[Close]

BLAST of Sed0000448.1 vs. ExPASy TrEMBL
Match: A0A6J1EXA3 (rhomboid-like protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111437003 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 9.2e-143
Identity = 263/292 (90.07%), Postives = 282/292 (96.58%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR+ ++A+ALFTIFFGI+GRS  LGLSYQDVIVKLR WKLV SVFAF
Sbjct: 1   MNGGPSGFNNAPVTRSFVVASALFTIFFGIQGRSIKLGLSYQDVIVKLRIWKLVTSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI+TSLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIITSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEF+ SFFSRFSLP AGNPPAAP+R+VRGNMPSF+GRQVER++
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFVSSFFSRFSLPSAGNPPAAPTRDVRGNMPSFVGRQVERSH 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
            PVPTAT EPPEDSIATLVSMGFDRNSARQALVHA N+VN+AT+ILLESQSH
Sbjct: 241 PPVPTAT-EPPEDSIATLVSMGFDRNSARQALVHAGNDVNIATSILLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. ExPASy TrEMBL
Match: A0A6J1IRZ2 (rhomboid-like protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111479978 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.1e-142
Identity = 263/292 (90.07%), Postives = 281/292 (96.23%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGF NAP+TR+ +IA+ALFTIFFGI+GRS  LGLSYQDVIVKLR WKLV SVFAF
Sbjct: 1   MNGGPSGFTNAPVTRSFVIASALFTIFFGIQGRSIKLGLSYQDVIVKLRIWKLVTSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI+TSLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIITSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEF+ SFFSRFSLP AGNPPAAP+RNVRGNMPSF+GRQVER++
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFVSSFFSRFSLPSAGNPPAAPTRNVRGNMPSFVGRQVERSH 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
            PVPTAT EPPE+SIATLVSMGFDRNSARQALVHA N+VN+ATN+LLESQSH
Sbjct: 241 PPVPTAT-EPPENSIATLVSMGFDRNSARQALVHAGNDVNIATNMLLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. ExPASy TrEMBL
Match: A0A6J1DN01 (rhomboid-like protein 20 OS=Momordica charantia OX=3673 GN=LOC111021509 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 6.0e-142
Identity = 267/293 (91.13%), Postives = 279/293 (95.22%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR  IIA+ALFTIFFGI+GRS  LGLSYQDVIVKLRFWKL+MSVFAF
Sbjct: 1   MNGGPSGFNNAPVTRTFIIASALFTIFFGIQGRSIKLGLSYQDVIVKLRFWKLLMSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPA NLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAVNLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPP-AAPSRNVRGNMPSFMGRQVERN 240
           AGSLYRLNVFGIRKAKFPEFI SFFS+FSLP  GNPP AAP+R+VRGNMPSF GRQVERN
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFISSFFSQFSLPSVGNPPAAAPNRDVRGNMPSFTGRQVERN 240

Query: 241 YTPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
           Y  VPTAT EPPEDSIATLVSMGFDRNSARQALV ARN+VNMATNILLE+QSH
Sbjct: 241 YPTVPTAT-EPPEDSIATLVSMGFDRNSARQALVRARNDVNMATNILLEAQSH 292

[Close]

BLAST of Sed0000448.1 vs. ExPASy TrEMBL
Match: A0A5D3D5B1 (Rhomboid-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00390 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 1.0e-141
Identity = 264/292 (90.41%), Postives = 278/292 (95.21%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR  IIA+ALFTIFFGI+GRS  LGLSYQDVIVKLRFWKLVMSVFAF
Sbjct: 1   MNGGPSGFNNAPVTRTFIIASALFTIFFGIQGRSIKLGLSYQDVIVKLRFWKLVMSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI++SLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIISSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEFI SFFSR SLP AGNPPAAP+R+VRGNMPSFM R VERNY
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFISSFFSRLSLPSAGNPPAAPNRDVRGNMPSFMSRPVERNY 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
              P+AT EPPED+IATLVSMGFDRNSARQALV ARN+VN+ATNILLESQSH
Sbjct: 241 PSAPSAT-EPPEDAIATLVSMGFDRNSARQALVQARNDVNIATNILLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. ExPASy TrEMBL
Match: A0A1S3CMQ9 (rhomboid-like protein 20 OS=Cucumis melo OX=3656 GN=LOC103502692 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 1.0e-141
Identity = 264/292 (90.41%), Postives = 278/292 (95.21%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+TR  IIA+ALFTIFFGI+GRS  LGLSYQDVIVKLRFWKLVMSVFAF
Sbjct: 1   MNGGPSGFNNAPVTRTFIIASALFTIFFGIQGRSIKLGLSYQDVIVKLRFWKLVMSVFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG+FLLYYFRVFERQIGSNKYSVFILFSI++SLLFEVLAISLLKDPAANLVTS
Sbjct: 61  SSTPELMFGLFLLYYFRVFERQIGSNKYSVFILFSIISSLLFEVLAISLLKDPAANLVTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGLLFASF+PFFFDIPVST+FRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL
Sbjct: 121 GPYGLLFASFVPFFFDIPVSTRFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLNVFGIRKAKFPEFI SFFSR SLP AGNPPAAP+R+VRGNMPSFM R VERNY
Sbjct: 181 AGSLYRLNVFGIRKAKFPEFISSFFSRLSLPSAGNPPAAPNRDVRGNMPSFMSRPVERNY 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
              P+AT EPPED+IATLVSMGFDRNSARQALV ARN+VN+ATNILLESQSH
Sbjct: 241 PSAPSAT-EPPEDAIATLVSMGFDRNSARQALVQARNDVNIATNILLESQSH 291

[Close]

BLAST of Sed0000448.1 vs. TAIR 10
Match: AT3G56740.1 (Ubiquitin-associated (UBA) protein )

HSP 1 Score: 431.8 bits (1109), Expect = 4.4e-121
Identity = 217/293 (74.06%), Postives = 250/293 (85.32%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGF+NAP+T+A +I +ALFT+FFGI+GRSS LGLSYQD+  K R WKL+MS FAF
Sbjct: 1   MNGGPSGFHNAPVTKAFVITSALFTVFFGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SSTPELMFG++LLYYFRVFERQIGSNKYSVFILFS   SLL EV+ +SLLKD  ANL+TS
Sbjct: 61  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTVSLLLEVILLSLLKDTTANLLTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPYGL+FASFIPF+ DIPVST+FRVFGV FSDKSFIYLAG+QLLLSSW+RSI PGICGI+
Sbjct: 121 GPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPGICGII 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGN-PPAAPSRNVRGNMPSFMGRQVERN 240
           AGSLYRLN+ GIRKAKFPEF+ SFFSR S P  GN PP APSRN+ G +    GR+ ER+
Sbjct: 181 AGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGRRAERS 240

Query: 241 YTPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
                 ++ EP E++I TLVSMGFDRN+ARQALVHARN+VN ATNILLE+QSH
Sbjct: 241 QPAPLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293

[Close]

BLAST of Sed0000448.1 vs. TAIR 10
Match: AT2G41160.1 (Ubiquitin-associated (UBA) protein )

HSP 1 Score: 390.6 bits (1002), Expect = 1.1e-108
Identity = 200/292 (68.49%), Postives = 236/292 (80.82%), Query Frame = 0


Query: 1   MNGGPSGFNNAPITRASIIATALFTIFFGIKGRSSNLGLSYQDVIVKLRFWKLVMSVFAF 60
           MNGGPSGFNNAP+T+A +IATALFT+FFGI+G SS LGLSYQD+  K R WKL++S FAF
Sbjct: 1   MNGGPSGFNNAPVTKAFVIATALFTVFFGIRGGSSKLGLSYQDIFEKFRIWKLIISAFAF 60

Query: 61  SSTPELMFGVFLLYYFRVFERQIGSNKYSVFILFSIVTSLLFEVLAISLLKDPAANLVTS 120
           SST +L+ G++LLY+FRVFERQIGSNKYSVFI FS   SL+ E + +SL KDP ANL+TS
Sbjct: 61  SSTTQLLSGLYLLYFFRVFERQIGSNKYSVFIFFSGFVSLILETILLSLTKDPTANLLTS 120

Query: 121 GPYGLLFASFIPFFFDIPVSTQFRVFGVRFSDKSFIYLAGLQLLLSSWRRSILPGICGIL 180
           GPY L+FASF+PFF DIPV+ +F V GV FSDKSFIYLAG+QLLLSSW+RSI  GICGI+
Sbjct: 121 GPYALVFASFVPFFLDIPVTKRFGVLGVHFSDKSFIYLAGVQLLLSSWKRSIFTGICGII 180

Query: 181 AGSLYRLNVFGIRKAKFPEFIGSFFSRFSLPFAGNPPAAPSRNVRGNMPSFMGRQVERNY 240
           AGSLYRLN+FGIRKAKFPEF+ S FSRFSLP   +    P R      P+ +GRQ  R Y
Sbjct: 181 AGSLYRLNIFGIRKAKFPEFMASLFSRFSLPSLSSHSQPPRR----TSPN-LGRQAVRAY 240

Query: 241 TPVPTATAEPPEDSIATLVSMGFDRNSARQALVHARNNVNMATNILLESQSH 293
                +T EP E++IATLVSMGFD+N+ARQALVHARN+VN ATNILLE+ SH
Sbjct: 241 RAPMPSTTEPSEEAIATLVSMGFDQNAARQALVHARNDVNAATNILLEAHSH 287

The following BLAST results are available for this feature:

BLAST of Sed0000448.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581669.1	8.5e-143	90.41	Rhomboid-like protein 20, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023516629.1	1.1e-142	90.41	rhomboid-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
XP_022930600.1	1.9e-142	90.07	rhomboid-like protein 20 [Cucurbita moschata]	[more]
KAG7018158.1	2.5e-142	90.07	Rhomboid-like protein 20 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022980682.1	4.2e-142	90.07	rhomboid-like protein 20 [Cucurbita maxima]	[more]

BLAST of Sed0000448.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LET3	6.2e-120	74.06	Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1	[more]
Q8RXQ2	1.6e-107	68.49	Rhomboid-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=RBL18 PE=2 SV=1	[more]
Q5ZJQ8	1.3e-16	25.29	Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus OX=9031 GN=UBA...	[more]
Q4R910	2.9e-16	24.78	Ubiquitin-associated domain-containing protein 2 OS=Macaca fascicularis OX=9541 ...	[more]
Q8NBM4	3.7e-16	25.73	Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBAC...	[more]

BLAST of Sed0000448.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXA3	9.2e-143	90.07	rhomboid-like protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111437003 PE=3 SV=1	[more]
A0A6J1IRZ2	2.1e-142	90.07	rhomboid-like protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111479978 PE=3 SV=1	[more]
A0A6J1DN01	6.0e-142	91.13	rhomboid-like protein 20 OS=Momordica charantia OX=3673 GN=LOC111021509 PE=4 SV=...	[more]
A0A5D3D5B1	1.0e-141	90.41	Rhomboid-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CMQ9	1.0e-141	90.41	rhomboid-like protein 20 OS=Cucumis melo OX=3656 GN=LOC103502692 PE=4 SV=1	[more]

BLAST of Sed0000448.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56740.1	4.4e-121	74.06	Ubiquitin-associated (UBA) protein	[more]
AT2G41160.1	1.1e-108	68.49	Ubiquitin-associated (UBA) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015940	Ubiquitin-associated domain	SMART	SM00165	uba_6	coord: 251..288 e-value: 1.4E-10 score: 51.2
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 251..286 e-value: 2.1E-12 score: 46.6
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 249..289 score: 14.812021
None	No IPR available	GENE3D	1.10.8.10		coord: 233..292 e-value: 1.2E-13 score: 52.9
IPR022764	Peptidase S54, rhomboid domain	PFAM	PF01694	Rhomboid	coord: 48..189 e-value: 1.1E-5 score: 25.4
IPR035952	Rhomboid-like superfamily	GENE3D	1.20.1540.10		coord: 9..188 e-value: 4.1E-7 score: 32.0
IPR035952	Rhomboid-like superfamily	SUPERFAMILY	144091	Rhomboid-like	coord: 8..190
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 244..290

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000448	Sed0000448	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000448.1-five_prime_utr	Sed0000448.1-five_prime_utr-LG12:6992211..6992322	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6992211..6992347	exon
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6992440..6992540	exon
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6994343..6994483	exon
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6995243..6995309	exon
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6996434..6996585	exon
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6996668..6996769	exon
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6996970..6997092	exon
Sed0000448.1-exon	Sed0000448.1-exon-LG12:6997581..6998130	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6992323..6992347	CDS
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6992440..6992540	CDS
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6994343..6994483	CDS
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6995243..6995309	CDS
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6996434..6996585	CDS
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6996668..6996769	CDS
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6996970..6997092	CDS
Sed0000448.1-cds	Sed0000448.1-cds-LG12:6997581..6997748	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000448.1-three_prime_utr	Sed0000448.1-three_prime_utr-LG12:6997749..6998130	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000448.1	Sed0000448.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity