Sed0000071.1 (mRNA) Chayote v1

Overview


Name	Sed0000071.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	CRM domain-containing protein
Location	LG05: 35466166 .. 35469871 (-)
Sequence length	1243
RNA-Seq Expression	Sed0000071.1
Synteny	Sed0000071.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTTTCTGGCGCCGCAAGCAACAATGGGAGCTTCGACAATGTCCTCTCACACTCACCTCATCCACTCTCTTCTTCTCCGCTCAGTTTCTTCTTCTCTCTTCTCTAAACCCTCCGCCGTCGCCGCCGCCGCCGCCGCCATCTCCGCCGCTCGCTTCCGTCAATCTAAACCCAACCCTTCAATCTTCCTCACTCGCCAACATCCTCACCGTTCCCGATCCCTCACTCCCTCGGCATCAACTTCCTTCTCTCGCTCCTTTTCCGACCTCGCCGAGGTCGGATTCGATGAACAACACGAGGAAATCGAAGTTGAAATCGATGATCTCGAACCGGAAGAGGCTGTTGGGGATGGATTGCAAACTGGCGCGGCTTCGGAGTTGTCTTCGTCGGCGGTGGATGGAAGTGAAGTGAAGGATATTCCGAGGTTGACGGTGAAGGAGAAGAAGGAATTGGCGTCATTCGCTCATAGCTTGGGGAAGAATCTGAAGAGTCAGTTGGTGGGGAAATCTGGTGTTACTTCTGGATTGGCTACTTCCTTCATCGAGACACTTGAAGCTAACGAGCTTCTCAAGGTTTGTTACTTCTTTTCTCTGTTTGATGCTATTCATGGAGTTCATATAGTTTTAGAATTAGGGTTTATGAAGCAACTATTCGAAGGAAACACAAATTTTTACCCTATGCTTCTTGTGCAATTTGAATAACTAGGACAATCTGGACATATACTGCTTTTTTGTAGTTAGGATTGCAATTACATTTTTTCTTTGGGAAAATAAATTCGTTTGTTGAATAGTAATTTTCGATTATTGTTGTCTCCAAGGGGTGGCACATTGGTCGAAGGGAATGTTCCCCTCAAAGTCCCAGGTTCGAGACTCAGCTGTGACATTATTCATTCGATGTCTCCCGGTGCCTGGCCTAGGGACGGACGTGGTTACCCTTGTTTCAAAGAAAAAAATTTCGATTATTGTTATAGGAAAGTTTTTGGTTGATCGACTCAAAGGGAATGGAAAATGTTTGTGCTTTAAAACTGTGGTGGGAATGAAAAACTATGGATTGGTCTAGTGTTCAATAAATGTCAAATGAAAGAGAAGGATGGAGAGTAAGCAGATTCAAGCCATGGTGGTCATCCCAAAGGGCAAATAATAGACATGTATCCACAAGGTTGTAGGTTCAAATCCTCCGATCTCCAAATATTATTGTTGTACTTAAAAAAAAGAAAGATCACGGTGATCATCTACAACGGATTTAATATCCTACTAGTTATTTTGATAACCAAATATAGTTGAGTCAAATAGTTGTCTTGTCATAGTAATCTAAGTTGACTCGGGTTATATAATAAAACTCGTTCCTAATCCATCATAGAGGGCTTTGGGCAAAGAGGTTATGTGTTCGATTCATGATGGCTACCTACTAGAAATTAATTTCACATGGGTTTGCTTGACACCTGAATGTTGTAGGATCAGACGGTGTGTCTTGTGAGAATAGTCGACGTGTGCGTAACCTGACTCTCATGGATATAAGAAAAACATATGATTAGTTGATCATAGATTGAATTTGTTGATAGATAGGGGAGGGCTCTTTCCATTAGTTTGGGGGGTTAATATTTAGGTATCTTAAAGATTGGAATGGGATAGAATCTCAGAATTCATATGGTTAAGCATTTTCCCTTTATATAATTGCCTTCCCTTAGTTTTAAATCCACAAAAGTAACAATCATCTTCATGTACATGTATTCCTCATCTTGTCCTACTACATTCATTTTCTGCATGAGAAGTTGGCCTACTTTATGAAGCAAACATAAACATACATTTTTTTAAAACAAAAAACTATCTTGATTCAAGCCTATTTATTTTAGTTTTTCTCATTTTGAGTAGATTTTTCTTCATGACCCTCATTTTTAAAAGAAAAACAATGATATTTCTGGTTGGTTTGATTTGTTCATGAAGAGGAATGTAAAATCCAAGGAATCAATTGTGGTTTCTGTCTGTAAACTTGACTAATGGCTTCAATTTCTGTTTTCTTTTGGGCGCACGGGTCATTGTTTTTATTTTATTTTGAAGGGTGCTTATAAAAAGGGACATTTCCTACAAGTTAGATGGTATGTTTCGGGAGAATACTTGAGATGCATGTAAGTTGGCCCGTACACTCACACATATAAAAAAAGTGACATTTCTGGTTGATTTGTTTTGTTTATAAAAGGAATGTATATCCTCTGAAATTCATTTGTAGTTTCTGTCTACAAACTTGACTAATGGATTCAATTTCTATGTTCTTTCTCATTTAAATCTTGAATATTAGAAAATCCTTAGGTCAAACTAGAATATAAGAAATTGAACCACTGGATACAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTAGTGAAGCAATTGGAGAAATCAACTGGCTCTGTGGTGGTGAGCAAAATTGGCAGAACTGTTATTATTTATAGGCCCAGCATCACAAAAATGAAAGCAGAGGAGGAAAAACGACGAGCTCGAAAAATTTATGTGAGAAAAGAACCCGATCGAGTGCAATCCATTTTGCAGGTAAGTAAATGGGTTGTTGACATTCTTAGCTCCTTTATTTTAAAAAAAGAGTTCATATCGTGTTTGATAATTATTTAGGTTTTGTTTGATGATCATTTAAGTACCGTTTGATAACTTTTTGGATTTTAGTTTTTGAAATTTAAGTTTTTTTTTACTAAAAGTCTCTGCAAGGAATTTCGTCTTCCCTAACTAAATTCTGAAAAAAAAATTGTTGGAGATCCTCATTTGTCCCATATTAAAAAGGTGAAGAGTTTCTAACATCTTTTTATAATAAGTGGGCTACTCTCCTCATCATCATTTTATTTTTAGAATTGTCCAAAAAATCAAATATTTTCTTAAGAAATATAAAGTTCATGGACAAATGATGAAAAATGAATACAATTTTCCATTATAAAAAATCTAATGGTCATGAAACGATGACTTAATTTTAGTTATTTTTGTTTGGAAATATAGACTTTTATATCGGGTTTACTTATTTTGTTATGTACCTTTTTACCCATGTTTTTAAAAGTCAAGTCTAAGTTTTAAAAAAATTATTTTTTGGTTAAAAATTCAAATGCAATATGAAATTTATAGCAAATATATGATAAGTAAACAAATACAATGTTCAAATATTAAATGGTTATCATTGGCAACTTCAGTATTTTACTGCAAGTTCTCGCTTAGATTTGAATAAATGTATTGATGCAGAATAAAGTACAAACACCCACGAGCTCGAACCGTGGTCGTCGTGGAAGCAGCCGTTTGGATCTGGAGTAGGATTCACATCTAGCACGTTCATTGTGGAGGGAAAGATTTTGAATTCCAACCCCATGTAAGTTGTGACCTCCTTGGGCAAGTTTGCCCCTTGAGGCACTTTCTTTCTCTTCACATGCCTTTATTGGGGTAATTTGTTTACTTCTATGCAGTATTTGGTTAGTAATTCTTTGCTTGGCTTGGGGAGCCCTTTGAGAAGCCTTTCTTTCTTTCTTTGGGAAACCATTAATACAAAAGACAATAACTTACACAATTGTCTTGGCCTAGCAGCAAAGGGGAACTTGTGGGTTCCATCCATGATTATCACCCACCTAAAAATTTATTAGAGTAAAATGTCATTTTGGTCCATGAATTTTAGTCGTTGTACTTTAAAAAAATACTTAAAATTGGTCCTTGC

mRNA sequence

CAGTTTCTGGCGCCGCAAGCAACAATGGGAGCTTCGACAATGTCCTCTCACACTCACCTCATCCACTCTCTTCTTCTCCGCTCAGTTTCTTCTTCTCTCTTCTCTAAACCCTCCGCCGTCGCCGCCGCCGCCGCCGCCATCTCCGCCGCTCGCTTCCGTCAATCTAAACCCAACCCTTCAATCTTCCTCACTCGCCAACATCCTCACCGTTCCCGATCCCTCACTCCCTCGGCATCAACTTCCTTCTCTCGCTCCTTTTCCGACCTCGCCGAGGTCGGATTCGATGAACAACACGAGGAAATCGAAGTTGAAATCGATGATCTCGAACCGGAAGAGGCTGTTGGGGATGGATTGCAAACTGGCGCGGCTTCGGAGTTGTCTTCGTCGGCGGTGGATGGAAGTGAAGTGAAGGATATTCCGAGGTTGACGGTGAAGGAGAAGAAGGAATTGGCGTCATTCGCTCATAGCTTGGGGAAGAATCTGAAGAGTCAGTTGGTGGGGAAATCTGGTGTTACTTCTGGATTGGCTACTTCCTTCATCGAGACACTTGAAGCTAACGAGCTTCTCAAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTAGTGAAGCAATTGGAGAAATCAACTGGCTCTGTGGTGGTGAGCAAAATTGGCAGAACTGTTATTATTTATAGGCCCAGCATCACAAAAATGAAAGCAGAGGAGGAAAAACGACGAGCTCGAAAAATTTATGTGAGAAAAGAACCCGATCGAGTGCAATCCATTTTGCAGAATAAAGTACAAACACCCACGAGCTCGAACCGTGGTCGTCGTGGAAGCAGCCGTTTGGATCTGGAGTAGGATTCACATCTAGCACGTTCATTGTGGAGGGAAAGATTTTGAATTCCAACCCCATGTAAGTTGTGACCTCCTTGGGCAAGTTTGCCCCTTGAGGCACTTTCTTTCTCTTCACATGCCTTTATTGGGGTAATTTGTTTACTTCTATGCAGTATTTGGTTAGTAATTCTTTGCTTGGCTTGGGGAGCCCTTTGAGAAGCCTTTCTTTCTTTCTTTGGGAAACCATTAATACAAAAGACAATAACTTACACAATTGTCTTGGCCTAGCAGCAAAGGGGAACTTGTGGGTTCCATCCATGATTATCACCCACCTAAAAATTTATTAGAGTAAAATGTCATTTTGGTCCATGAATTTTAGTCGTTGTACTTTAAAAAAATACTTAAAATTGGTCCTTGC

Coding sequence (CDS)

ATGGGAGCTTCGACAATGTCCTCTCACACTCACCTCATCCACTCTCTTCTTCTCCGCTCAGTTTCTTCTTCTCTCTTCTCTAAACCCTCCGCCGTCGCCGCCGCCGCCGCCGCCATCTCCGCCGCTCGCTTCCGTCAATCTAAACCCAACCCTTCAATCTTCCTCACTCGCCAACATCCTCACCGTTCCCGATCCCTCACTCCCTCGGCATCAACTTCCTTCTCTCGCTCCTTTTCCGACCTCGCCGAGGTCGGATTCGATGAACAACACGAGGAAATCGAAGTTGAAATCGATGATCTCGAACCGGAAGAGGCTGTTGGGGATGGATTGCAAACTGGCGCGGCTTCGGAGTTGTCTTCGTCGGCGGTGGATGGAAGTGAAGTGAAGGATATTCCGAGGTTGACGGTGAAGGAGAAGAAGGAATTGGCGTCATTCGCTCATAGCTTGGGGAAGAATCTGAAGAGTCAGTTGGTGGGGAAATCTGGTGTTACTTCTGGATTGGCTACTTCCTTCATCGAGACACTTGAAGCTAACGAGCTTCTCAAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTAGTGAAGCAATTGGAGAAATCAACTGGCTCTGTGGTGGTGAGCAAAATTGGCAGAACTGTTATTATTTATAGGCCCAGCATCACAAAAATGAAAGCAGAGGAGGAAAAACGACGAGCTCGAAAAATTTATGTGAGAAAAGAACCCGATCGAGTGCAATCCATTTTGCAGAATAAAGTACAAACACCCACGAGCTCGAACCGTGGTCGTCGTGGAAGCAGCCGTTTGGATCTGGAGTAG

Protein sequence

MGASTMSSHTHLIHSLLLRSVSSSLFSKPSAVAAAAAAISAARFRQSKPNPSIFLTRQHPHRSRSLTPSASTSFSRSFSDLAEVGFDEQHEEIEVEIDDLEPEEAVGDGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPSITKMKAEEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSRLDLE

Homology

[Close]

BLAST of Sed0000071.1 vs. NCBI nr
Match: XP_022971306.1 (uncharacterized protein LOC111470060 [Cucurbita maxima])

HSP 1 Score: 345.1 bits (884), Expect = 5.5e-91
Identity = 214/289 (74.05%), Postives = 228/289 (78.89%), Query Frame = 0


Query: 1   MGASTMS--SHTHLIHSLLLRSVSSSL---FSKPSAVAAAAAAISAARFRQSKPNPSIFL 60
           MGAS MS  SH+HLIHSLLLRSV SSL     +PSAV      ISAA   Q KPN SIFL
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAV------ISAACSHQFKPNSSIFL 60

Query: 61  TRQHPHRSRSLTPSASTSFSRSFSDL----AEVGF---------DEQHEEIEVEIDDLEP 120
            RQ PHRSRS TPSAS SFSRSFS +    + VGF         DE   E EVEI+D E 
Sbjct: 61  IRQSPHRSRSFTPSASVSFSRSFSSIISGTSAVGFEDDDVIDDDDESDYEDEVEIEDFEL 120

Query: 121 EE-AVGDGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKS 180
           E+  V DGL+T  AS+ SS+ V  SEVK IP LTVKEKKELAS+AHSLGK LKSQLVGKS
Sbjct: 121 EDNTVEDGLETAVASDSSSAVVSRSEVKSIPSLTVKEKKELASYAHSLGKKLKSQLVGKS 180

Query: 181 GVTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRP 240
           GVT GLATSFIETLEANELLKIKVLGNCPGELEDVV+QLE+STGSVVVSKIGRTVIIYRP
Sbjct: 181 GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRP 240

Query: 241 SITKMKAEEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           SI+KMKAEEEKRRARKIYVRKEPDRV+  LQNKVQTP SSNRGRRGSSR
Sbjct: 241 SISKMKAEEEKRRARKIYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSR 283

[Close]

BLAST of Sed0000071.1 vs. NCBI nr
Match: XP_023529380.1 (uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 1.6e-90
Identity = 215/295 (72.88%), Postives = 230/295 (77.97%), Query Frame = 0


Query: 1   MGASTMS--SHTHLIHSLLLRSVSSSL---FSKPSAVAAAAAAISAARFRQSKPNPSIFL 60
           MGAS MS  SH+HLIHSLLLRSV SSL    S+PS      AAISAA   Q KPN SIFL
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSRPS------AAISAACSHQFKPNSSIFL 60

Query: 61  TRQHPHRSRSLTPSASTSFSRSF----SDLAEVGF---------------DEQHEEIEVE 120
            RQ PHRSRS +PSAS SFSRSF    SD + VGF               DE   E EVE
Sbjct: 61  IRQSPHRSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYEDEVEIEDEVE 120

Query: 121 IDDLEPEE-AVGDGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKS 180
           I+D E E+  V DGL+T  AS+ SS+ V  SEVK+IP LTVKEKKELAS+AHSLGK LKS
Sbjct: 121 IEDFELEDNTVEDGLETAVASDSSSAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKS 180

Query: 181 QLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRT 240
           QLVGKSGVT GLATSFIETLEANELLKIKVLGNCPGELEDVVKQLE+STGSVVVSKIGRT
Sbjct: 181 QLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEESTGSVVVSKIGRT 240

Query: 241 VIIYRPSITKMKAEEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           VIIYRPSI+KMKAEEEKRRARK+YVRKEPDRV+  LQNKVQTP SSNRGRRGSSR
Sbjct: 241 VIIYRPSISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSR 289

[Close]

BLAST of Sed0000071.1 vs. NCBI nr
Match: KAG6588422.1 (hypothetical protein SDJN03_16987, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343.2 bits (879), Expect = 2.1e-90
Identity = 213/289 (73.70%), Postives = 229/289 (79.24%), Query Frame = 0


Query: 1   MGASTMS--SHTHLIHSLLLRSVSSSL---FSKPSAVAAAAAAISAARFRQSKPNPSIFL 60
           MGAS MS  SH+HLIHSLLLRSV SSL     +PSAV      ISAA   Q KPN SIFL
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAV------ISAACSHQFKPNSSIFL 60

Query: 61  TRQHPHRSRSLTPSASTSFSRSF----SDLAEVGF---------DEQHEEIEVEIDDLEP 120
            RQ PHRSRS TPSAS SFSRSF    SD + VGF         +E   E EVEI+D E 
Sbjct: 61  IRQSPHRSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFEL 120

Query: 121 EE-AVGDGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKS 180
           E+  V DGL+T  AS+ SS+ V  SEVK+IP LTVKEKKELAS+AHSLGK LKSQLVGKS
Sbjct: 121 EDNTVEDGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKS 180

Query: 181 GVTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRP 240
           GVT GLATSFIETLEANELLKIKVLGNCPGELEDVV+QLE+STGSVVVSKIGRTVIIYRP
Sbjct: 181 GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRP 240

Query: 241 SITKMKAEEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           SI+KMKAEEEKRRARK+YVRKEPDRV+  LQNKVQTP SSNRGRRGSSR
Sbjct: 241 SISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSR 283

[Close]

BLAST of Sed0000071.1 vs. NCBI nr
Match: XP_004148536.1 (uncharacterized protein LOC101213060 [Cucumis sativus] >KGN43169.1 hypothetical protein Csa_020174 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 3.8e-84
Identity = 194/282 (68.79%), Postives = 223/282 (79.08%), Query Frame = 0


Query: 1   MGASTMSSHTHLIHSLLLRSVSSS---LFSKPSAVAAAAAAISAARFRQSKPNPSIFLTR 60
           MGAS +SSH+   HSLLLRS+ SS    FSKPS    AAAAIS   F Q KP+ S  LTR
Sbjct: 1   MGASIISSHS---HSLLLRSLPSSFSTFFSKPS----AAAAISTVCFHQFKPSSSTLLTR 60

Query: 61  QHPHRSRSLTPSASTSFSRSF----SDLAEVGFDEQHEEIEVE-----IDDLEPEEAVGD 120
           + PH  R  TPSA  SFSRSF    SD +EV FDE  +EIE +      D++E E+ VGD
Sbjct: 61  ESPHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMEDEVGD 120

Query: 121 GLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLA 180
           G +TG ASELSS  +  +EVK+IP LT+KEKKELAS+AH LGK LKSQLVGKSGVT GLA
Sbjct: 121 GTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLA 180

Query: 181 TSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPSITKMKA 240
           TSFIETLEANELLKIK+LGNCP ELEDVV++L +STGSVVV++IGRTVIIYRPSITKMKA
Sbjct: 181 TSFIETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITKMKA 240

Query: 241 EEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           EEEKRRARK+Y+RKEPDRV+SILQ K++TP SSNRGRRG+SR
Sbjct: 241 EEEKRRARKVYMRKEPDRVKSILQKKIETPQSSNRGRRGTSR 275

[Close]

BLAST of Sed0000071.1 vs. NCBI nr
Match: XP_008448058.1 (PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo])

HSP 1 Score: 320.9 bits (821), Expect = 1.1e-83
Identity = 193/283 (68.20%), Postives = 223/283 (78.80%), Query Frame = 0


Query: 1   MGASTMSSHTHL-IHSLLLRSVSSS---LFSKPSAVAAAAAAISAARFRQSKPNPSIFLT 60
           M AS +SSH+H   HSLLLRSV SS    FSKPS    A AA S   F Q KP+ S FLT
Sbjct: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPS----ATAAFSTVCFHQFKPSSSTFLT 60

Query: 61  RQHPHRSRSLTPSASTSFSRSFSDL----AEVGFDEQHEEIEVE-----IDDLEPEEAVG 120
           R+ PH SR  TPS S SFSR FS      +EV FDE  +EIE +      D++E E++VG
Sbjct: 61  RKSPHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVG 120

Query: 121 DGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGL 180
           DG + G ASELSS  ++ +EVK+IP LT+KEKKELAS+AH LGK LKSQLVGKSGVT GL
Sbjct: 121 DGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPSITKMK 240
           ATSFIETLEANELLKIK+LGNCP +LEDVV++LE+STGSVVV++IGRTVIIYRPSITKMK
Sbjct: 181 ATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMK 240

Query: 241 AEEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           AEEEKRR+RKIY+RKEPDRV+SILQ KV+TP SSNRGRRG+SR
Sbjct: 241 AEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSR 279

[Close]

BLAST of Sed0000071.1 vs. ExPASy Swiss-Prot
Match: P54454 (Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN=yqeI PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-09
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 134 LTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGEL 193
           LT K+K+ L S AH L    +   VGK GV   +     E LEA EL+K+ VL NC  + 
Sbjct: 2   LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 61

Query: 194 EDVVKQLEKSTGSVVVSKIGRTVIIYRPS 223
            DV + L K + S +V  IG T+++Y+ S
Sbjct: 62  NDVAEALVKGSRSQLVQTIGNTIVLYKES 87

[Close]

BLAST of Sed0000071.1 vs. ExPASy Swiss-Prot
Match: P0AGK6 (RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 28/89 (31.46%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 134 LTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGEL 193
           L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+        
Sbjct: 3   LSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 62

Query: 194 EDVVKQLEKSTGSVVVSKIGRTVIIYRPS 223
             +V+ + + TG+  V  IG+T+++YRP+
Sbjct: 63  TLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Sed0000071.1 vs. ExPASy Swiss-Prot
Match: P0AGK5 (RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yhbY PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 28/89 (31.46%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 134 LTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGEL 193
           L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+        
Sbjct: 3   LSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 62

Query: 194 EDVVKQLEKSTGSVVVSKIGRTVIIYRPS 223
             +V+ + + TG+  V  IG+T+++YRP+
Sbjct: 63  TLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Sed0000071.1 vs. ExPASy Swiss-Prot
Match: P0AGK4 (RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 28/89 (31.46%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 134 LTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGEL 193
           L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+        
Sbjct: 3   LSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 62

Query: 194 EDVVKQLEKSTGSVVVSKIGRTVIIYRPS 223
             +V+ + + TG+  V  IG+T+++YRP+
Sbjct: 63  TLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Sed0000071.1 vs. ExPASy Swiss-Prot
Match: P71376 (RNA-binding protein HI_1333 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1333 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.9e-04
Identity = 26/89 (29.21%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 134 LTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGEL 193
           L+ K+K+ L   AH L   +   ++G +G+T G+       L  +EL+K+KV G      
Sbjct: 4   LSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETK 63

Query: 194 EDVVKQLEKSTGSVVVSKIGRTVIIYRPS 223
           + ++  + + T +  V  IG  +++YRPS
Sbjct: 64  QLIINAIVRETKAAQVQTIGHILVLYRPS 89

[Close]

BLAST of Sed0000071.1 vs. ExPASy TrEMBL
Match: A0A6J1I2Z3 (uncharacterized protein LOC111470060 OS=Cucurbita maxima OX=3661 GN=LOC111470060 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.6e-91
Identity = 214/289 (74.05%), Postives = 228/289 (78.89%), Query Frame = 0


Query: 1   MGASTMS--SHTHLIHSLLLRSVSSSL---FSKPSAVAAAAAAISAARFRQSKPNPSIFL 60
           MGAS MS  SH+HLIHSLLLRSV SSL     +PSAV      ISAA   Q KPN SIFL
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAV------ISAACSHQFKPNSSIFL 60

Query: 61  TRQHPHRSRSLTPSASTSFSRSFSDL----AEVGF---------DEQHEEIEVEIDDLEP 120
            RQ PHRSRS TPSAS SFSRSFS +    + VGF         DE   E EVEI+D E 
Sbjct: 61  IRQSPHRSRSFTPSASVSFSRSFSSIISGTSAVGFEDDDVIDDDDESDYEDEVEIEDFEL 120

Query: 121 EE-AVGDGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKS 180
           E+  V DGL+T  AS+ SS+ V  SEVK IP LTVKEKKELAS+AHSLGK LKSQLVGKS
Sbjct: 121 EDNTVEDGLETAVASDSSSAVVSRSEVKSIPSLTVKEKKELASYAHSLGKKLKSQLVGKS 180

Query: 181 GVTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRP 240
           GVT GLATSFIETLEANELLKIKVLGNCPGELEDVV+QLE+STGSVVVSKIGRTVIIYRP
Sbjct: 181 GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRP 240

Query: 241 SITKMKAEEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           SI+KMKAEEEKRRARKIYVRKEPDRV+  LQNKVQTP SSNRGRRGSSR
Sbjct: 241 SISKMKAEEEKRRARKIYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSR 283

[Close]

BLAST of Sed0000071.1 vs. ExPASy TrEMBL
Match: A0A0A0K2C3 (CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-84
Identity = 194/282 (68.79%), Postives = 223/282 (79.08%), Query Frame = 0


Query: 1   MGASTMSSHTHLIHSLLLRSVSSS---LFSKPSAVAAAAAAISAARFRQSKPNPSIFLTR 60
           MGAS +SSH+   HSLLLRS+ SS    FSKPS    AAAAIS   F Q KP+ S  LTR
Sbjct: 1   MGASIISSHS---HSLLLRSLPSSFSTFFSKPS----AAAAISTVCFHQFKPSSSTLLTR 60

Query: 61  QHPHRSRSLTPSASTSFSRSF----SDLAEVGFDEQHEEIEVE-----IDDLEPEEAVGD 120
           + PH  R  TPSA  SFSRSF    SD +EV FDE  +EIE +      D++E E+ VGD
Sbjct: 61  ESPHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMEDEVGD 120

Query: 121 GLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLA 180
           G +TG ASELSS  +  +EVK+IP LT+KEKKELAS+AH LGK LKSQLVGKSGVT GLA
Sbjct: 121 GTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLA 180

Query: 181 TSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPSITKMKA 240
           TSFIETLEANELLKIK+LGNCP ELEDVV++L +STGSVVV++IGRTVIIYRPSITKMKA
Sbjct: 181 TSFIETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITKMKA 240

Query: 241 EEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           EEEKRRARK+Y+RKEPDRV+SILQ K++TP SSNRGRRG+SR
Sbjct: 241 EEEKRRARKVYMRKEPDRVKSILQKKIETPQSSNRGRRGTSR 275

[Close]

BLAST of Sed0000071.1 vs. ExPASy TrEMBL
Match: A0A1S3BJF7 (uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 5.3e-84
Identity = 193/283 (68.20%), Postives = 223/283 (78.80%), Query Frame = 0


Query: 1   MGASTMSSHTHL-IHSLLLRSVSSS---LFSKPSAVAAAAAAISAARFRQSKPNPSIFLT 60
           M AS +SSH+H   HSLLLRSV SS    FSKPS    A AA S   F Q KP+ S FLT
Sbjct: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPS----ATAAFSTVCFHQFKPSSSTFLT 60

Query: 61  RQHPHRSRSLTPSASTSFSRSFSDL----AEVGFDEQHEEIEVE-----IDDLEPEEAVG 120
           R+ PH SR  TPS S SFSR FS      +EV FDE  +EIE +      D++E E++VG
Sbjct: 61  RKSPHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVG 120

Query: 121 DGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGL 180
           DG + G ASELSS  ++ +EVK+IP LT+KEKKELAS+AH LGK LKSQLVGKSGVT GL
Sbjct: 121 DGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPSITKMK 240
           ATSFIETLEANELLKIK+LGNCP +LEDVV++LE+STGSVVV++IGRTVIIYRPSITKMK
Sbjct: 181 ATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMK 240

Query: 241 AEEEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           AEEEKRR+RKIY+RKEPDRV+SILQ KV+TP SSNRGRRG+SR
Sbjct: 241 AEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSR 279

[Close]

BLAST of Sed0000071.1 vs. ExPASy TrEMBL
Match: A0A5D3DFJ1 (Putative RNA-binding CRS1 / YhbY domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00840 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-63
Identity = 131/161 (81.37%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 110 LQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLAT 169
           ++TG ASELSS  ++ +EVK+IP LT+KEKKELAS+AH LGK LKSQLVGKSGVT GLAT
Sbjct: 1   METGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLAT 60

Query: 170 SFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPSITKMKAE 229
           SFIETLEANELLKIK+LGNCP ELEDVV++LE+STGSVVV++IGRTVIIYRPSITKMKAE
Sbjct: 61  SFIETLEANELLKIKILGNCPEELEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAE 120

Query: 230 EEKRRARKIYVRKEPDRVQSILQNKVQTPTSSNRGRRGSSR 271
           EEKRR+RKIY+RKEPDRV+SILQ KV+TP SSNRGRRG+SR
Sbjct: 121 EEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSR 161

[Close]

BLAST of Sed0000071.1 vs. ExPASy TrEMBL
Match: A0A6J1C409 (uncharacterized protein LOC111007723 OS=Momordica charantia OX=3673 GN=LOC111007723 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 140/182 (76.92%), Postives = 160/182 (87.91%), Query Frame = 0


Query: 92  EIEVEIDDLE-PEEAVGDGLQTGAASELSSSAVDGSEVKDIPRLTVKEKKELASFAHSLG 151
           E EV I D E  EE++G   Q  A S+LSSS V+GSEVK++P LTVKEKKELAS+AHSLG
Sbjct: 13  EGEVRIVDFELEEESIGGESQADAVSQLSSSVVNGSEVKNLPSLTVKEKKELASYAHSLG 72

Query: 152 KNLKSQLVGKSGVTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVS 211
           K LK+QLVGKSGVT GLA SF+ETLEANELLKIK+L NCP EL+D V+QLE+STGSVVVS
Sbjct: 73  KKLKTQLVGKSGVTPGLAISFVETLEANELLKIKILRNCPVELDDAVRQLEESTGSVVVS 132

Query: 212 KIGRTVIIYRPSITKMKAEEEKRRARKIYVRKEPDRVQSILQNKVQTP--TSSNRGRRGS 271
           +IGRTVIIYRPSI+KMKAEE+KR+ARKIYVRKEPDRV+SILQNKVQTP  ++SNRGRRGS
Sbjct: 133 QIGRTVIIYRPSISKMKAEEKKRQARKIYVRKEPDRVKSILQNKVQTPGISNSNRGRRGS 192

[Close]

BLAST of Sed0000071.1 vs. TAIR 10
Match: AT4G39040.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 142.1 bits (357), Expect = 6.5e-34
Identity = 115/292 (39.38%), Postives = 156/292 (53.42%), Query Frame = 0


Query: 3   ASTMSSHTHLIHSLLLRSVSSS---LFSKPSAVAAAAAAISAARFRQSKPNPSIFLTRQH 62
           AS   S THLIH+LL      S   LF +P   +A+ +  +     ++KP    F ++  
Sbjct: 6   ASASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSN----HRNKPRFQSFSSKPL 65

Query: 63  PHRSRSLTPSASTSFSRSFSDLAEVGFDEQH--EEIEVEIDDLEPEEAVG-----DGLQT 122
           P  S SL   + +S      +  E   DE    EE E E ++ E E+  G      G++ 
Sbjct: 66  PCHSASLVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVVSERGIED 125

Query: 123 GAASELSSSAVDGSEVKD----------IPRLTVKEKKELASFAHSLGKNLKSQLVGKSG 182
             ASE  S   D  E  +            +L++KEKKELAS+AHSLG  LK QLVGKSG
Sbjct: 126 SEASEEVSEIGDKEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLGDKLKCQLVGKSG 185

Query: 183 VTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPS 242
           VT  +  SF+ETLE NELLK+K+    P ELED V+ LE++TGSV V +IGRTVI+YRPS
Sbjct: 186 VTDSVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVGQIGRTVILYRPS 245

Query: 243 ITKMKAEEEKRRARKIYVRKEPDRVQSILQNKVQTPTS---SNRGRRGSSRL 272
            TKMKAE +K+   ++ + +      +      +   S     RGRRG SR+
Sbjct: 246 PTKMKAEAKKKEVERMSITRRQKYANTRPTKPFRREYSERPDGRGRRGGSRV 293

[Close]

BLAST of Sed0000071.1 vs. TAIR 10
Match: AT4G39040.2 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-33
Identity = 107/260 (41.15%), Postives = 145/260 (55.77%), Query Frame = 0


Query: 3   ASTMSSHTHLIHSLLLRSVSSS---LFSKPSAVAAAAAAISAARFRQSKPNPSIFLTRQH 62
           AS   S THLIH+LL      S   LF +P   +A+ +  +     ++KP    F ++  
Sbjct: 6   ASASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSN----HRNKPRFQSFSSKPL 65

Query: 63  PHRSRSLTPSASTSFSRSFSDLAEVGFDEQH--EEIEVEIDDLEPEEAVG-----DGLQT 122
           P  S SL   + +S      +  E   DE    EE E E ++ E E+  G      G++ 
Sbjct: 66  PCHSASLVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVVSERGIED 125

Query: 123 GAASELSSSAVDGSEVKD----------IPRLTVKEKKELASFAHSLGKNLKSQLVGKSG 182
             ASE  S   D  E  +            +L++KEKKELAS+AHSLG  LK QLVGKSG
Sbjct: 126 SEASEEVSEIGDKEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLGDKLKCQLVGKSG 185

Query: 183 VTSGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPS 242
           VT  +  SF+ETLE NELLK+K+    P ELED V+ LE++TGSV V +IGRTVI+YRPS
Sbjct: 186 VTDSVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVGQIGRTVILYRPS 245

[Close]

BLAST of Sed0000071.1 vs. TAIR 10
Match: AT2G21350.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 132.9 bits (333), Expect = 4.0e-31
Identity = 98/237 (41.35%), Postives = 140/237 (59.07%), Query Frame = 0


Query: 1   MGASTMSSHTHLIHSLLLRSVSSS---LFSKPSAVAAAAAAISAARFRQSKPNPSIFLTR 60
           M  +  S+ T+LIH LL     +S   LF +P +V+      S   +  S    S+ L R
Sbjct: 1   MATAKSSTLTNLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSSHHAWISS----SLPLPR 60

Query: 61  QHPHRSRSLTPSASTSFSRSFSDLAEVGFDEQHEEIEVEIDDLEPEEAVGDGLQTGAASE 120
            +   S  L P       +SFS + E   DE +  +   ++++       DG + G  SE
Sbjct: 61  PYISFSPLLVP-------KSFSSVDESEQDEDNVSLVASLNEIN-----DDGQEDG--SE 120

Query: 121 LSSSAVDGSEVKDIPRLTVKEKKELASFAHSLGKNLKSQLVGKSGVTSGLATSFIETLEA 180
           L+  ++  +       L+ KEK++LAS+AH LG  LKSQLVGKSGVT  +  SF+ETLE 
Sbjct: 121 LTMVSMRENRRSSALELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEK 180

Query: 181 NELLKIKVLGNCPGELEDVVKQLEKSTGSVVVSKIGRTVIIYRPSITKMKAEEEKRR 235
           NELLK+K+   CPGELED++ +LE++TGSV V +I RTVI+YRPS TK+KA+E+K+R
Sbjct: 181 NELLKVKIHRTCPGELEDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADEDKKR 219

The following BLAST results are available for this feature:

BLAST of Sed0000071.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971306.1	5.5e-91	74.05	uncharacterized protein LOC111470060 [Cucurbita maxima]	[more]
XP_023529380.1	1.6e-90	72.88	uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo]	[more]
KAG6588422.1	2.1e-90	73.70	hypothetical protein SDJN03_16987, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004148536.1	3.8e-84	68.79	uncharacterized protein LOC101213060 [Cucumis sativus] >KGN43169.1 hypothetical ...	[more]
XP_008448058.1	1.1e-83	68.20	PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo]	[more]

BLAST of Sed0000071.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P54454	9.3e-09	40.45	Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]
P0AGK6	1.6e-05	31.46	RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1	[more]
P0AGK5	1.6e-05	31.46	RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ...	[more]
P0AGK4	1.6e-05	31.46	RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 ...	[more]
P71376	6.9e-04	29.21	RNA-binding protein HI_1333 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 1...	[more]

BLAST of Sed0000071.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2Z3	2.6e-91	74.05	uncharacterized protein LOC111470060 OS=Cucurbita maxima OX=3661 GN=LOC111470060...	[more]
A0A0A0K2C3	1.8e-84	68.79	CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV...	[more]
A0A1S3BJF7	5.3e-84	68.20	uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=...	[more]
A0A5D3DFJ1	4.0e-63	81.37	Putative RNA-binding CRS1 / YhbY domain protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1C409	1.5e-62	76.92	uncharacterized protein LOC111007723 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Sed0000071.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39040.1	6.5e-34	39.38	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT4G39040.2	2.5e-33	41.15	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G21350.1	4.0e-31	41.35	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 134..220 e-value: 4.5E-20 score: 82.7
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 134..220 e-value: 7.3E-15 score: 54.9
IPR001890	RNA-binding, CRM domain	PROSITE	PS51295	CRM	coord: 132..231 score: 16.756042
IPR035920	YhbY-like superfamily	GENE3D	3.30.110.60		coord: 133..233 e-value: 3.6E-26 score: 93.0
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 134..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..266
None	No IPR available	PANTHER	PTHR47714	CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 3..270
None	No IPR available	PANTHER	PTHR47714:SF1	CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 3..270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000071	Sed0000071	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000071.1-three_prime_utr	Sed0000071.1-three_prime_utr-LG05:35466166..35466559	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000071.1-exon	Sed0000071.1-exon-LG05:35466166..35466628	exon
Sed0000071.1-exon	Sed0000071.1-exon-LG05:35467319..35467528	exon
Sed0000071.1-exon	Sed0000071.1-exon-LG05:35469302..35469871	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000071.1-cds	Sed0000071.1-cds-LG05:35466560..35466628	CDS
Sed0000071.1-cds	Sed0000071.1-cds-LG05:35467319..35467528	CDS
Sed0000071.1-cds	Sed0000071.1-cds-LG05:35469302..35469847	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000071.1-five_prime_utr	Sed0000071.1-five_prime_utr-LG05:35469848..35469871	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000071.1	Sed0000071.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding