Pay0009459.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0009459.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	conserved peptide upstream open reading frame 37
Location	chr07: 19833159 .. 19833464 (+)
Sequence length	162
RNA-Seq Expression	Pay0009459.1
Synteny	Pay0009459.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACACGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAGTTGTCAGGTTTGTCAACTCAGTTCTTGCCTTGTGATTTTGCTCGTTGATTCACAACCGGATTAGTTACACATTTATTTTGTTGGAATTGTTTTGTATTTTTTTCCCCTGGAAGTTGCCATGATGAAACTTTTGGCATTTTTTCTGTTCCAGGCTGAGTATTTTCGGCAATTGCTTAAGCCAGTCACGTAG

mRNA sequence

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACACGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAGTTGTCAGGCTGAGTATTTTCGGCAATTGCTTAAGCCAGTCACGTAG

Coding sequence (CDS)

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACACGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAGTTGTCAGGCTGAGTATTTTCGGCAATTGCTTAAGCCAGTCACGTAG

Protein sequence

MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT

Homology

[Close]

BLAST of Pay0009459.1 vs. ExPASy TrEMBL
Match: A0A1S4E402 (uncharacterized protein LOC103501164 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501164 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. ExPASy TrEMBL
Match: A0A0A0KVT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQA+YFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. ExPASy TrEMBL
Match: W9R7U4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIVRVIACFQPLQ CQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. ExPASy TrEMBL
Match: A0A0A0K458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. ExPASy TrEMBL
Match: A0A1S4E0J3 (uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. NCBI nr
Match: XP_016902954.1 (PREDICTED: uncharacterized protein LOC103501164 isoform X2 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. NCBI nr
Match: KAG7014898.1 (hypothetical protein SDJN02_22529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-21
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRQLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. NCBI nr
Match: KAG7030896.1 (hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
           MVCQAATQTRFR LKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 87  MVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 139

[Close]

BLAST of Pay0009459.1 vs. NCBI nr
Match: KAG6576874.1 (Transcription factor basic helix-loop-helix 143, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKP 52
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRQLLKP
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRQLLKP 51

[Close]

BLAST of Pay0009459.1 vs. NCBI nr
Match: EXB57311.1 (hypothetical protein L484_011398 [Morus notabilis])

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIVRVIACFQPLQ CQAEYFR LLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 89.7 bits (221), Expect = 7.4e-19
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQ+A QTRFR LKHE+GI G   I+VRVIACFQPLQ CQAEYFRQLLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Pay0009459.1 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 )

HSP 1 Score: 80.1 bits (196), Expect = 5.9e-16
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHE-NGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MV Q+A QTRFR  K+E NG + +PTI+VRVIACFQP+ +CQAEYFR +LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Pay0009459.1 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-15
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 54
          MVCQ+  +TRFR LK+E G A + TI+VRVI C+QP+ +CQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]

BLAST of Pay0009459.1 vs. TAIR 10
Match: AT1G29951.1 (conserved peptide upstream open reading frame 35 )

HSP 1 Score: 40.4 bits (93), Expect = 5.2e-04
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 31 IACFQPLQSCQAEYFRQLLKPVT 54
          IA +Q +Q CQAEYFRQLLKPVT
Sbjct: 26 IANYQSVQVCQAEYFRQLLKPVT 48

The following BLAST results are available for this feature:

BLAST of Pay0009459.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0009459.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E402	7.3e-22	100.00	uncharacterized protein LOC103501164 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KVT2	4.7e-21	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1	[more]
W9R7U4	2.3e-20	94.34	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1	[more]
A0A0A0K458	4.0e-20	92.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]
A0A1S4E0J3	4.0e-20	92.45	uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Pay0009459.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902954.1	1.5e-21	100.00	PREDICTED: uncharacterized protein LOC103501164 isoform X2 [Cucumis melo]	[more]
KAG7014898.1	3.3e-21	98.11	hypothetical protein SDJN02_22529 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7030896.1	3.7e-20	94.34	hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6576874.1	3.7e-20	98.04	Transcription factor basic helix-loop-helix 143, partial [Cucurbita argyrosperma...	[more]
EXB57311.1	4.8e-20	94.34	hypothetical protein L484_011398 [Morus notabilis]	[more]

BLAST of Pay0009459.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50011.1	7.4e-19	81.13	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	5.9e-16	68.52	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	1.3e-15	66.04	conserved peptide upstream open reading frame 40	[more]
AT1G29951.1	5.2e-04	78.26	conserved peptide upstream open reading frame 35	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281:SF4	SUBFAMILY NOT NAMED	coord: 1..53
None	No IPR available	PANTHER	PTHR35281	BNAA02G34170D PROTEIN	coord: 1..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0009459	Pay0009459	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0009459.1-cds	Pay0009459.1-cds-chr07:19833159..19833281	CDS
Pay0009459.1-cds	Pay0009459.1-cds-chr07:19833426..19833464	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0009459.1-exon	Pay0009459.1-exon-chr07:19833159..19833281	exon
Pay0009459.1-exon	Pay0009459.1-exon-chr07:19833426..19833464	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0009459.1	Pay0009459.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity